Csor.00g139800 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g139800
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	gibberellin-regulated protein 1-like
Location	Csor_Chr01: 14194062 .. 14194589 (-)
RNA-Seq Expression	Csor.00g139800
Synteny	Csor.00g139800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTATAGCCTTGAACCAACTTCCATCCTCCTAATTTATCACAAACCTCAAATGTTCTTACGCCCAATATATATGGGTTACGTTGCAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGGTAATATATTAATATATTTTATATTTTATATACGTAAAAAAAATAATGAAATATCGAGTGTATTAGTTATGATATACCAAATTTAATAGGTCAAAATTTAACATTTATTGCGTGTGATCAGATTGTGGGGGAGCCTGTGCGTCGAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAA

mRNA sequence

ATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGATTGTGGGGGAGCCTGTGCGTCGAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAA

Coding sequence (CDS)

ATGGCCATCTCTGGTCTTTCCAAGGCTTTGCTCACCTGTGTTCTCATGTCCCTTCTCGTCGTTCATTTGGTTGCAGCTGATGAAAAGGTGAACTCAATTCATGGCGTTGCGGCTCATCCTGCTAATATACAAAGCATTGATTGTGGGGGAGCCTGTGCGTCGAGGTGCAAATTATCTTCAAGGCCACACCTTTGCAAGAGGGCATGCGGGACGTGCTGTGCGCGTTGCAACTGCGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCGTGCTACGCCAGCTTGACCACTCACGGCGGCCGGAGAAAGTGTCCCTAA

Protein sequence

MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP

Homology

[Close]

BLAST of Csor.00g139800 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-29
Identity = 65/104 (62.50%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLV---VHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRP 65
           +SKAL   +L+SLL+   V  +  D+  ++    AA+  + + IDCGGACA+RC+LSSRP
Sbjct: 3   ISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAY--SYKKIDCGGACAARCRLSSRP 62

Query: 66  HLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            LC RACGTCCARCNCVPPGTSG  ETCPCYASLTTHG +RKCP
Sbjct: 63  RLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Csor.00g139800 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 3.4e-28
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLVVHLVAAD-EKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 65
           +SKAL+  +L+SLLV+ LV AD E     +G A      + IDCG AC +RC+LS RP L
Sbjct: 3   ISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRPRL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Csor.00g139800 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.4e-26
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 8   KALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKR 67
           + LL  +L+SLLV+  V AD   ++         +   IDC   C  RC LSSRP+LC R
Sbjct: 5   RVLLASLLISLLVLDFVHADMVTSN---------DAPKIDCNSRCQERCSLSSRPNLCHR 64

Query: 68  ACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           ACGTCCARCNCV PGTSG Y+ CPCY SLTTHGGRRKCP
Sbjct: 65  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Csor.00g139800 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCC 73
           +++ L++V L   +  V++  G A     +  IDCGG C  RC  SSR  LC RAC +CC
Sbjct: 8   LVLLLIIVCLTTYELHVHAADG-AKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCC 67

Query: 74  ARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           +RCNCVPPGTSG    CPCYAS+TTHGGR KCP
Sbjct: 68  SRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Csor.00g139800 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.0e-21
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPA----NIQSIDCGGACASRCKLSSRPHLCKRAC 73
           +  S LV+ L+        +H  AA  +     +  IDCGG C  RC  SSRP+LC RAC
Sbjct: 3   IFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRAC 62

Query: 74  GTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            +CC RCNCVPPGT+G +  CPCYAS+TT GGR KCP
Sbjct: 63  NSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Csor.00g139800 vs. NCBI nr
Match: KAG6608594.1 (Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219 bits (557), Expect = 7.45e-72
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Csor.00g139800 vs. NCBI nr
Match: XP_023525231.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215 bits (548), Expect = 1.76e-70
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKALLTCVLMSLLVVHLV AD+KVNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVGADDKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Csor.00g139800 vs. NCBI nr
Match: XP_022982305.1 (gibberellin-regulated protein 1-like [Cucurbita maxima])

HSP 1 Score: 214 bits (545), Expect = 5.05e-70
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLV ADEKVNSIHGVAAHPAN+QSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGADEKVNSIHGVAAHPANMQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Csor.00g139800 vs. NCBI nr
Match: XP_022940222.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 213 bits (543), Expect = 1.02e-69
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLVAADE+VNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           RP+LCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Csor.00g139800 vs. NCBI nr
Match: XP_022139249.1 (gibberellin-regulated protein 11-like [Momordica charantia])

HSP 1 Score: 156 bits (395), Expect = 3.47e-47
Identity = 78/106 (73.58%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MA S LSK L+TCV MSLLV+  V A EKVN   G  A P  IQ+IDCGGACA RCKLSS
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHEKVN---GTTADPTKIQNIDCGGACAMRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           RP+LCKRACGTCCARC+CVPPGTSGGY+ CPCYA +TT GGR KCP
Sbjct: 61  RPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of Csor.00g139800 vs. ExPASy TrEMBL
Match: A0A6J1J2A8 (gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 2.44e-70
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLV ADEKVNSIHGVAAHPAN+QSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGADEKVNSIHGVAAHPANMQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYAS+TTHGGRRKCP
Sbjct: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Csor.00g139800 vs. ExPASy TrEMBL
Match: A0A6J1FJ01 (gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445908 PE=3 SV=1)

HSP 1 Score: 213 bits (543), Expect = 4.94e-70
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MAISGLSKAL+TCVLMSLLVVHLVAADE+VNSIHGVAAHPANIQSIDCGGACASRCKLSS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAADEEVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           RP+LCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP
Sbjct: 61  RPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Csor.00g139800 vs. ExPASy TrEMBL
Match: A0A6J1CCE1 (gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC111010205 PE=3 SV=1)

HSP 1 Score: 156 bits (395), Expect = 1.68e-47
Identity = 78/106 (73.58%), Postives = 85/106 (80.19%), Query Frame = 0


Query: 1   MAISGLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSS 60
           MA S LSK L+TCV MSLLV+  V A EKVN   G  A P  IQ+IDCGGACA RCKLSS
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHEKVN---GTTADPTKIQNIDCGGACAMRCKLSS 60

Query: 61  RPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           RP+LCKRACGTCCARC+CVPPGTSGGY+ CPCYA +TT GGR KCP
Sbjct: 61  RPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of Csor.00g139800 vs. ExPASy TrEMBL
Match: A0A6A2Y6S2 (Snakin-2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111543pilonHSYRG00108 PE=3 SV=1)

HSP 1 Score: 145 bits (365), Expect = 5.73e-43
Identity = 71/102 (69.61%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 5   GLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 64
            +SKAL+  +L+SLL+V LV AD+ V S     A P  I   DCGGACA+RC+LSSRPHL
Sbjct: 2   AISKALIASLLISLLLVQLVGADQLVTSASKGTAPPTEI---DCGGACAARCRLSSRPHL 61

Query: 65  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           C RACGTCCARCNCVPPGT+G  E CPCYASLTTHGGRRKCP
Sbjct: 62  CNRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 100

[Close]

BLAST of Csor.00g139800 vs. ExPASy TrEMBL
Match: A0A1R3HYG7 (Gibberellin regulated protein OS=Corchorus olitorius OX=93759 GN=COLO4_26149 PE=3 SV=1)

HSP 1 Score: 144 bits (364), Expect = 8.13e-43
Identity = 70/102 (68.63%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 5   GLSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 64
            +SKA++  +L+SLLV  LV AD+ VN     A +P   Q IDCG AC +RCKLSSRPHL
Sbjct: 2   AISKAMIASLLISLLVFQLVEADQLVNDESNEAKYP---QKIDCGAACKARCKLSSRPHL 61

Query: 65  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106
           C RACGTCCARCNCVPPGT+G  E CPCYASLTTHGGRRKCP
Sbjct: 62  CNRACGTCCARCNCVPPGTAGNQEMCPCYASLTTHGGRRKCP 100

[Close]

BLAST of Csor.00g139800 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 130.2 bits (326), Expect = 9.9e-31
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLC 65
           +SKAL+  +L+SLLV+ LV ADE     +G A      + IDCG AC +RC+LS RP LC
Sbjct: 3   ISKALIASLLISLLVLQLVQADENSQKKNGYA------KKIDCGSACVARCRLSRRPRLC 62

Query: 66  KRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  HRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97

[Close]

BLAST of Csor.00g139800 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 125.6 bits (314), Expect = 2.4e-29
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 6   LSKALLTCVLMSLLVVHLVAAD-EKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHL 65
           +SKAL+  +L+SLLV+ LV AD E     +G A      + IDCG AC +RC+LS RP L
Sbjct: 3   ISKALIASLLISLLVLQLVQADVENSQKKNGYA------KKIDCGSACVARCRLSRRPRL 62

Query: 66  CKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           C RACGTCC RCNCVPPGT G Y+ C CYASLTTHGGRRKCP
Sbjct: 63  CHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Csor.00g139800 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 117.5 bits (293), Expect = 6.7e-27
Identity = 58/99 (58.59%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 8   KALLTCVLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKR 67
           + LL  +L+SLLV+  V AD   ++         +   IDC   C  RC LSSRP+LC R
Sbjct: 5   RVLLASLLISLLVLDFVHADMVTSN---------DAPKIDCNSRCQERCSLSSRPNLCHR 64

Query: 68  ACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           ACGTCCARCNCV PGTSG Y+ CPCY SLTTHGGRRKCP
Sbjct: 65  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Csor.00g139800 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-22
Identity = 50/93 (53.76%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPANIQSIDCGGACASRCKLSSRPHLCKRACGTCC 73
           +++ L++V L   +  V++  G A     +  IDCGG C  RC  SSR  LC RAC +CC
Sbjct: 8   LVLLLIIVCLTTYELHVHAADG-AKVGEGVVKIDCGGRCKDRCSKSSRTKLCLRACNSCC 67

Query: 74  ARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
           +RCNCVPPGTSG    CPCYAS+TTHGGR KCP
Sbjct: 68  SRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Csor.00g139800 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 101.3 bits (251), Expect = 4.9e-22
Identity = 50/97 (51.55%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 14  VLMSLLVVHLVAADEKVNSIHGVAAHPA----NIQSIDCGGACASRCKLSSRPHLCKRAC 73
           +  S LV+ L+        +H  AA  +     +  IDCGG C  RC  SSRP+LC RAC
Sbjct: 3   IFRSTLVLLLILFCLTTFELHVHAAEDSQVGEGVVKIDCGGRCKGRCSKSSRPNLCLRAC 62

Query: 74  GTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 107
            +CC RCNCVPPGT+G +  CPCYAS+TT GGR KCP
Sbjct: 63  NSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

The following BLAST results are available for this feature:

BLAST of Csor.00g139800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	1.1e-29	62.50	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
P46689	3.4e-28	62.75	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
F4IQJ4	9.4e-26	58.59	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46688	1.4e-21	53.76	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]
P46687	7.0e-21	51.55	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]

BLAST of Csor.00g139800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608594.1	7.45e-72	100.00	Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2...	[more]
XP_023525231.1	1.76e-70	97.17	snakin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022982305.1	5.05e-70	96.23	gibberellin-regulated protein 1-like [Cucurbita maxima]	[more]
XP_022940222.1	1.02e-69	97.17	gibberellin-regulated protein 1-like [Cucurbita moschata]	[more]
XP_022139249.1	3.47e-47	73.58	gibberellin-regulated protein 11-like [Momordica charantia]	[more]

BLAST of Csor.00g139800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2A8	2.44e-70	96.23	gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179...	[more]
A0A6J1FJ01	4.94e-70	97.17	gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A6J1CCE1	1.68e-47	73.58	gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6A2Y6S2	5.73e-43	69.61	Snakin-2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111543pilonHSYRG00108 PE=3...	[more]
A0A1R3HYG7	8.13e-43	68.63	Gibberellin regulated protein OS=Corchorus olitorius OX=93759 GN=COLO4_26149 PE=...	[more]

BLAST of Csor.00g139800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75750.2	9.9e-31	63.37	GAST1 protein homolog 1	[more]
AT1G75750.1	2.4e-29	62.75	GAST1 protein homolog 1	[more]
AT2G18420.1	6.7e-27	58.59	Gibberellin-regulated family protein	[more]
AT4G09610.1	1.0e-22	53.76	GAST1 protein homolog 2	[more]
AT4G09600.1	4.9e-22	51.55	GAST1 protein homolog 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 47..106 e-value: 7.8E-21 score: 74.0
None	No IPR available	PANTHER	PTHR23201:SF67	SNAKIN-2-LIKE	coord: 6..106
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 6..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g139800.m01	Csor.00g139800.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
cellular_component	GO:0005576	extracellular region