Csor.00g139350 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g139350
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	High mobility group B protein 2
Location	Csor_Chr01: 14412723 .. 14414644 (+)
RNA-Seq Expression	Csor.00g139350
Synteny	Csor.00g139350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGGATTTCTAGGCACGTGCGAATCGCATGACAGTATAACGTGCGTGCAAAGGAATAGAAACGCTGGAGCACGAAGGCACCGCAAATGGGCCCTTTCTATGGATATGGGCTTTTTTGTAATTTTCTGGCCCACCTCATTATACTCGTTTTCACTCTGGGCTTGATTGTTTCGAGCTTCTTTTGAGGCCCAACATTGGAAAAACGGGCTTTCAGAGATGCTCTACACTTGCCCCTCGCACCGCCAACGAATATGAGCAGTAGGATCTCGATGACGTGGACCAATGGCATAAGAGTGCGCGGATTATTGAGTTGGCAATAAATGAAAAATCCCGCCGAAATTCCTGCTTGGTTTCATTTCGTGCACAATTGAATTTCAATTTGCCCTCCTGTCCTTCAAGGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACCCGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGTACGTTTCATCCATCTCCTTCGATTTCTGATGCAATTTCATGTGCTTTCTTTCTTTCATCTCCAAATTGTTGCTGATCTGATCTTATTCCTGCAGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGTGAGTTTTTATTGTCCCTTCCATGTTATTTTCTGTCTGATGTGTTTGTTTTCCACTTTTAATCGGTTCATATCACCAGTGTTAAAGTAGGCGTTAACCCTTTTTGTTCTGATCGATCGTTTTTGCTTATTTGTTCATTTGCTGTAGGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGTAATTTTTTTTTTTATAAGATGGCTGAATTACTCGCTTATCTACAAATTATTTCATTTATACGGCTGTGGAGTTGAGTAATATGCGAGCTTGGATGGAAAAACTAGGAACTTGTTTATGGTTTGTGACAAAATATATATTCAAAATCATTATAATTACCTTGTGGATATATTAGCGAGTGTCAAAACACCCGACTTTCAACGAAAAGATTCCTCTGATTTGTGTATTTTACTTTAGCAGTGTTTTTGTTCCTGTAAGTCGATTATGTTTCTTATCTCTATGCTGTCGTGTTGTTGTTGTCGTCGTTTTTTTTTTTTTTTTTTTTTTTTTTACAATTAAAGGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTAAGTTATTTCCCGTTGTACTTTTTGTTATTTGTCTCCATTCAACTTTTGCAATTCATTCTATGGTAATGTGTGTTGACAATTGACTTGCAAATGGTTCGATCAGGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGTATGTGATTGCCATCGTAGTGTTTCTTAACTTCACCTGGTATTATGAACTATGTCTGAATTGCTGTTTATAATATCAGGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGTATTAATATCCTCTTGGAAAAGTTTCTGAAGCATTCATATTGCAGCTGTATATTACTGTGTGAATTCAATTTTCACTCCCATGTGAGTTCAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGTAGTTTGTTTAAGGATTGCTGTAAAAGTAGACGTTTTGATGTGGATGTTTGTTTGAGATTACCATTCCTTTCATTTGATATTGCAGGAGGAGGATGAGGAGTGA

mRNA sequence

ATGCAGGGATTTCTAGGCACGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACCCGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGAGGAGGATGAGGAGTGA

Coding sequence (CDS)

ATGCAGGGATTTCTAGGCACGACTGAATTATCCCTCTCCTCCTCGCCTCGCACCGCTTCTTTGCTTCTCTCTCACCCGCAGCTCCGCTTCATCCTCCCTATTCAAACCCTACACCTAACCCAACCTCCTTCCATCGGATTCGATATGAAAGGCGGTAAATCGAAGACGGAGTCGATGAAACCACACGCCAAGCTTGCGGTGAAGAAAGGTGCAGCCAAGAAAGGGAGTAAGAAGGCAGGAAAAGATCCTAACAAACCCAAGAGGCCCGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGAAAGAAGTTCAGCGAGGAGAACCCGAATAACAAAGCAGTATCTGCTGTTGGCAAAGCTGCAGGACACAAATGGAAATCGATGTCTGATGCTGAAAAAGCTCCTTACGTTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAACATGAAGGCCTATAACAAGAAACAGGCTAGTGGAGCCAATGCTGCAGAGGGAGATGAGTCTGAGAAGTCAACGTCCGAGGTGAATGGTGACGATGAGGCAGGAGACGATGATGGCAGCGAGGAGGAGGAGGATGAGGAGTGA

Protein sequence

MQGFLGTTELSLSSSPRTASLLLSHPQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGDDEAGDDDGSEEEEDEE

Homology

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BLAST of Csor.00g139350 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.4e-43
Identity = 109/154 (70.78%), Postives = 125/154 (81.17%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAV-KKGAAKK-----GSKKAGKDPNKPKRPASAFFVFMEEFRK 108
           MKGGKSKTES +   KLAV KKGAA K     G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 109 KFSEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGA 168
            F++E+P NKAVSAVGKAAG KWK+MSDAEKAPYVAK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 169 NAAEGDESEKSTSEVNGDDEAGDDDGSEEEEDEE 197
              + +ESEKS SEVN +D+  D++GS EEED++
Sbjct: 121 TGGDEEESEKSVSEVNDEDD--DEEGSGEEEDDD 152

[Close]

BLAST of Csor.00g139350 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-37
Identity = 99/148 (66.89%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 197
           ES+KS SEVN +D+A  +DGSEEEED++
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEEEEDDD 141

[Close]

BLAST of Csor.00g139350 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.4e-37
Identity = 99/150 (66.00%), Postives = 118/150 (78.67%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 108
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 109 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 168
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 169 GDESEKSTSEVNGDDEAGDDDGSEEEEDEE 197
            +ES+KS SEVN +D+A  +DGSEEEED++
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEEEEDDD 144

[Close]

BLAST of Csor.00g139350 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.4e-36
Identity = 95/149 (63.76%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAA-KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEE 108
           MKGGKSK +S     KLAVKK AA  K +KKA KDPNKPKRP SAFFVFME+FRK + E+
Sbjct: 1   MKGGKSKAKS---DNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 109 NPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEG 168
           +PNNK+V+ VGKA G KWK ++ AEKAP+++KA+KRK EYEKN++AYNKKQA+G  AAE 
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 169 DESEKSTSEVNGDDEAGDDDGSEEEEDEE 197
           +ES+KS SEVN DDE  D  G ++ ED++
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSEDDD 144

[Close]

BLAST of Csor.00g139350 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-31
Identity = 96/160 (60.00%), Postives = 121/160 (75.62%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVK-KGAAK--KGSK-KAGKDPNKPKRPASAFFVFMEEFRKKF 108
           MKG KSK  + K  AKLAVK KGA K  KG K KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSK-GAAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 109 SEENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANA 168
            E+NP NK+V+AVGKAAG +WKS+S+++KAPYVAKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 169 A--------EGDESEKSTSEVNGDDEAGDDDGSEEEEDEE 197
           A        + +ES+KS SEVN +D   D++GSEE+ED++
Sbjct: 121 APAKEEEEEDEEESDKSKSEVNDED---DEEGSEEDEDDD 156

[Close]

BLAST of Csor.00g139350 vs. NCBI nr
Match: KAG6608639.1 (hypothetical protein SDJN03_01981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360 bits (923), Expect = 9.74e-125
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MQGFLGTTELSLSSSPRTASLLLSHPQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK 60
           MQGFLGTTELSLSSSPRTASLLLSHPQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK
Sbjct: 1   MQGFLGTTELSLSSSPRTASLLLSHPQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK 60

Query: 61  PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA 120
           PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA
Sbjct: 61  PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA 120

Query: 121 AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD 180
           AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD
Sbjct: 121 AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD 180

Query: 181 DEAGDDDGSEEEEDEE 196
           DEAGDDDGSEEEEDEE
Sbjct: 181 DEAGDDDGSEEEEDEE 196

[Close]

BLAST of Csor.00g139350 vs. NCBI nr
Match: KAG7037955.1 (hypothetical protein SDJN02_01588, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351 bits (901), Expect = 2.81e-121
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MQGFLGTTELSLSSSPRTASLLLSHPQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK 60
           MQGFLGTTELSLSSSPRTASLLLSH QLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK
Sbjct: 1   MQGFLGTTELSLSSSPRTASLLLSHTQLRFILPIQTLHLTQPPSIGFDMKGGKSKTESMK 60

Query: 61  PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA 120
           PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA
Sbjct: 61  PHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEENPNNKAVSAVGKA 120

Query: 121 AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD 180
           AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD
Sbjct: 121 AGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGDESEKSTSEVNGD 180

Query: 181 DEAGDDDGSEE 191
           DEAGDDDGSEE
Sbjct: 181 DEAGDDDGSEE 191

[Close]

BLAST of Csor.00g139350 vs. NCBI nr
Match: XP_022940991.1 (HMG1/2-like protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 268 bits (685), Expect = 3.43e-89
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 196
           ESEKSTSEVNGDDEAGDDDGSEEEEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 148

[Close]

BLAST of Csor.00g139350 vs. NCBI nr
Match: XP_022981797.1 (HMG1/2-like protein isoform X1 [Cucurbita maxima])

HSP 1 Score: 266 bits (679), Expect = 4.23e-88
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDE 195
           ESEKSTSEVNGDDEAGDDDGSEEEE+E
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEEEE 147

[Close]

BLAST of Csor.00g139350 vs. NCBI nr
Match: XP_022940992.1 (HMG1/2-like protein isoform X2 [Cucurbita moschata] >XP_022981798.1 HMG1/2-like protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 265 bits (676), Expect = 7.78e-88
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDE 195
           ESEKSTSEVNGDDEAGDDDGSEEE++E
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEDEE 147

[Close]

BLAST of Csor.00g139350 vs. ExPASy TrEMBL
Match: A0A6J1FJX2 (HMG1/2-like protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=3 SV=1)

HSP 1 Score: 268 bits (685), Expect = 1.66e-89
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 196
           ESEKSTSEVNGDDEAGDDDGSEEEEDEE
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 148

[Close]

BLAST of Csor.00g139350 vs. ExPASy TrEMBL
Match: A0A6J1IV01 (HMG1/2-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 2.05e-88
Identity = 146/147 (99.32%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDE 195
           ESEKSTSEVNGDDEAGDDDGSEEEE+E
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEEEE 147

[Close]

BLAST of Csor.00g139350 vs. ExPASy TrEMBL
Match: A0A6J1J327 (HMG1/2-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 SV=1)

HSP 1 Score: 265 bits (676), Expect = 3.77e-88
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDE 195
           ESEKSTSEVNGDDEAGDDDGSEEE++E
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEDEE 147

[Close]

BLAST of Csor.00g139350 vs. ExPASy TrEMBL
Match: A0A6J1FL59 (HMG1/2-like protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=3 SV=1)

HSP 1 Score: 265 bits (676), Expect = 3.77e-88
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN
Sbjct: 1   MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD
Sbjct: 61  PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDE 195
           ESEKSTSEVNGDDEAGDDDGSEEE++E
Sbjct: 121 ESEKSTSEVNGDDEAGDDDGSEEEDEE 147

[Close]

BLAST of Csor.00g139350 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 222 bits (565), Expect = 2.98e-71
Identity = 131/149 (87.92%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAA-KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEE 108
           MKGGKSK+ES K   KLAVKKGAA KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKF+EE
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 109 NPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEG 168
           NPNNKAVSAVGKAAG KWKSMSDAEKAPY+AKADKRKVEYEKNMKAYNKKQASGANAA+ 
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 169 DESEKSTSEVNGDDEAGDDDGSEEEEDEE 196
           DESEKS SEVN DDE GD+ GSEEE+D+E
Sbjct: 121 DESEKSMSEVN-DDEDGDE-GSEEEDDDE 147

[Close]

BLAST of Csor.00g139350 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 157.1 bits (396), Expect = 1.4e-38
Identity = 99/148 (66.89%), Postives = 117/148 (79.05%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEEEEDEE 197
           ES+KS SEVN +D+A  +DGSEEEED++
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEEEEDDD 141

[Close]

BLAST of Csor.00g139350 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 156.0 bits (393), Expect = 3.1e-38
Identity = 99/150 (66.00%), Postives = 118/150 (78.67%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 108
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 109 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 168
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 169 GDESEKSTSEVNGDDEAGDDDGSEEEEDEE 197
            +ES+KS SEVN +D+A  +DGSEEEED++
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEEEEDDD 144

[Close]

BLAST of Csor.00g139350 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 154.8 bits (390), Expect = 7.0e-38
Identity = 98/149 (65.77%), Postives = 117/149 (78.52%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 108
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 109 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 168
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 169 GDESEKSTSEVNGDDEAGDDDGSEEEEDE 196
            +ES+KS SEVN +D+A  +DGSEEE+D+
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEEEDDD 143

[Close]

BLAST of Csor.00g139350 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 154.5 bits (389), Expect = 9.1e-38
Identity = 96/143 (67.13%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFSEEN 108
           MKG KSK E+     KL+V K  A KG+K A KDPNKPKRP+SAFFVFME+FR  + EE+
Sbjct: 1   MKGAKSKAETRS--TKLSVTKKPA-KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 109 PNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAEGD 168
           P NK+V+AVGKA G KWKS+SD+EKAPYVAKADKRKVEYEKNMKAYNKK   G    E +
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--EDE 120

Query: 169 ESEKSTSEVNGDDEAGDDDGSEE 192
           ES+KS SEVN +D+A  +DGSEE
Sbjct: 121 ESDKSVSEVNDEDDA--EDGSEE 136

[Close]

BLAST of Csor.00g139350 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-37
Identity = 97/148 (65.54%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 49  MKGGKSKTESMKPHAKLAVKKGAAKKG--SKKAGKDPNKPKRPASAFFVFMEEFRKKFSE 108
           MKG KSKTE+    +KL+V K  AK     K A KDPNKPKRPASAFFVFME+FR+ F +
Sbjct: 1   MKGAKSKTETRS--SKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKK 60

Query: 109 ENPNNKAVSAVGKAAGHKWKSMSDAEKAPYVAKADKRKVEYEKNMKAYNKKQASGANAAE 168
           ENP NK+V+ VGKAAG KWKS+SD+EKAPYVAKA+KRKVEYEKN+KAYNKK   G    E
Sbjct: 61  ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--E 120

Query: 169 GDESEKSTSEVNGDDEAGDDDGSEEEED 195
            +ES+KS SEVN +D+A  +DGSEE++D
Sbjct: 121 DEESDKSVSEVNDEDDA--EDGSEEDDD 142

The following BLAST results are available for this feature:

BLAST of Csor.00g139350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	5.4e-43	70.78	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	2.0e-37	66.89	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	4.4e-37	66.00	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40619	6.4e-36	63.76	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P27347	1.2e-31	60.00	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of Csor.00g139350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608639.1	9.74e-125	100.00	hypothetical protein SDJN03_01981, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037955.1	2.81e-121	99.48	hypothetical protein SDJN02_01588, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022940991.1	3.43e-89	100.00	HMG1/2-like protein isoform X1 [Cucurbita moschata]	[more]
XP_022981797.1	4.23e-88	99.32	HMG1/2-like protein isoform X1 [Cucurbita maxima]	[more]
XP_022940992.1	7.78e-88	98.64	HMG1/2-like protein isoform X2 [Cucurbita moschata] >XP_022981798.1 HMG1/2-like ...	[more]

BLAST of Csor.00g139350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJX2	1.66e-89	100.00	HMG1/2-like protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=...	[more]
A0A6J1IV01	2.05e-88	99.32	HMG1/2-like protein isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 ...	[more]
A0A6J1J327	3.77e-88	98.64	HMG1/2-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480836 PE=3 ...	[more]
A0A6J1FL59	3.77e-88	98.64	HMG1/2-like protein isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446410 PE=...	[more]
A0A1S3BW96	2.98e-71	87.92	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]

BLAST of Csor.00g139350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	1.4e-38	66.89	high mobility group B3	[more]
AT1G20693.1	3.1e-38	66.00	high mobility group B2	[more]
AT1G20693.3	7.0e-38	65.77	high mobility group B2	[more]
AT1G20696.3	9.1e-38	67.13	high mobility group B3	[more]
AT1G20693.2	1.2e-37	65.54	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 137..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..196
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 49..194
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 86..152 e-value: 1.27167E-19 score: 76.8977
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 85..156 e-value: 3.4E-25 score: 99.7
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 86..155 e-value: 5.1E-23 score: 81.3
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 86..155 score: 20.373165
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 69..170 e-value: 1.3E-26 score: 94.8
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 72..159
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 49..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g139350.m01	Csor.00g139350.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin