Csor.00g132590 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g132590
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protodermal factor 1-like
Location	Csor_Chr02: 236755 .. 237667 (+)
RNA-Seq Expression	Csor.00g132590
Synteny	Csor.00g132590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAACCAAACAAGCTTCTCCTCTCCTTTTCACTCTACTTGCTGGGCTGCTTTCTCAAAGCCTGCTCATCCCTGTACTCTCCACCACCATTGCTGACCAGAAGAGCTACTACTCTCCTCCAGACCCACATGCTGGAACTCCCCCAACAGGTCACACATTCACAAACAAAAACACTTTAGTTTCAGCATAGTAGTAATTAGTAGACTTACAGCATTCTGCATTTTGCATTGCAGGTTCACACAGCAACCCTATACCACCTTCACATGGCTATGGAGGCACACCGCCGCATTATTCCACGCCAACTCCTTCGACACCAACCAAGTCTCCTTCAAGTGGAAGTGGATACTACAACCCTCCATCTGGTGGTAGCACACCAACCACCCCTGTAGATCCAGGAACTCCAAGCACTCCAAGCACACCAAGCACTCCAAGCACTCCAAGCACTCCAAGCACTCCAAGCACACCAAGCACTCCTGGCACTCCCACTACTCCATTTACCTGCAAGTAAGTCACAGTAACTATTTCTATGAAAAAGAAAGCATTCCTCTTTAGGTTTGAAAAATATGTGTTTGTTTTGCAGTTTTTGGCTGAATCACCCAGGAATGATATGGGGAGTACTGGGATGGTGGGGAACGTTAGGAAACTGCTTTGGAGCAACCAATGTCCCAGGATTTGGAACAAATCTCAACTTACTCCAAGCACTTTCAAACACAAGGGCTGATGGGTTTGGGGCTCTTTTAAGAGAAGGCACTGCTTCATACCTCAACTCTCTTGCAAGTAACAGATTCCCCTTCACAACCAAGCAAGTTCAGTCGAGTTTTGTCTCGGCACTTAACTCCAACAGAGCAGCAGCAGATCAGGCCAACATCTTCAAATTAGCCAACGAGGGGAAAATTAAGCTCACAGCCTGA

mRNA sequence

ATGAGAACCAAACAAGCTTCTCCTCTCCTTTTCACTCTACTTGCTGGGCTGCTTTCTCAAAGCCTGCTCATCCCTGTACTCTCCACCACCATTGCTGACCAGAAGAGCTACTACTCTCCTCCAGACCCACATGCTGGAACTCCCCCAACAGGTTCACACAGCAACCCTATACCACCTTCACATGGCTATGGAGGCACACCGCCGCATTATTCCACGCCAACTCCTTCGACACCAACCAAGTCTCCTTCAAGTGGAAGTGGATACTACAACCCTCCATCTGGTGGTAGCACACCAACCACCCCTGTAGATCCAGGAACTCCAAGCACTCCAAGCACACCAAGCACTCCAAGCACTCCAAGCACTCCAAGCACTCCAAGCACACCAAGCACTCCTGGCACTCCCACTACTCCATTTACCTGCAATTTTTGGCTGAATCACCCAGGAATGATATGGGGAGTACTGGGATGGTGGGGAACGTTAGGAAACTGCTTTGGAGCAACCAATGTCCCAGGATTTGGAACAAATCTCAACTTACTCCAAGCACTTTCAAACACAAGGGCTGATGGGTTTGGGGCTCTTTTAAGAGAAGGCACTGCTTCATACCTCAACTCTCTTGCAAGTAACAGATTCCCCTTCACAACCAAGCAAGTTCAGTCGAGTTTTGTCTCGGCACTTAACTCCAACAGAGCAGCAGCAGATCAGGCCAACATCTTCAAATTAGCCAACGAGGGGAAAATTAAGCTCACAGCCTGA

Coding sequence (CDS)

ATGAGAACCAAACAAGCTTCTCCTCTCCTTTTCACTCTACTTGCTGGGCTGCTTTCTCAAAGCCTGCTCATCCCTGTACTCTCCACCACCATTGCTGACCAGAAGAGCTACTACTCTCCTCCAGACCCACATGCTGGAACTCCCCCAACAGGTTCACACAGCAACCCTATACCACCTTCACATGGCTATGGAGGCACACCGCCGCATTATTCCACGCCAACTCCTTCGACACCAACCAAGTCTCCTTCAAGTGGAAGTGGATACTACAACCCTCCATCTGGTGGTAGCACACCAACCACCCCTGTAGATCCAGGAACTCCAAGCACTCCAAGCACACCAAGCACTCCAAGCACTCCAAGCACTCCAAGCACTCCAAGCACACCAAGCACTCCTGGCACTCCCACTACTCCATTTACCTGCAATTTTTGGCTGAATCACCCAGGAATGATATGGGGAGTACTGGGATGGTGGGGAACGTTAGGAAACTGCTTTGGAGCAACCAATGTCCCAGGATTTGGAACAAATCTCAACTTACTCCAAGCACTTTCAAACACAAGGGCTGATGGGTTTGGGGCTCTTTTAAGAGAAGGCACTGCTTCATACCTCAACTCTCTTGCAAGTAACAGATTCCCCTTCACAACCAAGCAAGTTCAGTCGAGTTTTGTCTCGGCACTTAACTCCAACAGAGCAGCAGCAGATCAGGCCAACATCTTCAAATTAGCCAACGAGGGGAAAATTAAGCTCACAGCCTGA

Protein sequence

MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPSHGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKLANEGKIKLTA

Homology

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BLAST of Csor.00g132590 vs. ExPASy Swiss-Prot
Match: Q9S728 (Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.9e-42
Identity = 131/297 (44.11%), Postives = 167/297 (56.23%), Query Frame = 0


Query: 10  LFTLLAGLLSQSLLIPVLSTTIADQKSYY-SPPDPHAGTPPT-----------------G 69
           ++ L A LLSQ L   V S    D K+YY SPP    GTPP+                  
Sbjct: 9   VWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDPSPS 68

Query: 70  SHSNPIPPSH-GYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPS-- 129
           + S+P PPSH     TP H  TPTP TP+ +P+  +   N  S  S P+TP  P TPS  
Sbjct: 69  TPSHPSPPSHTPTPSTPSH--TPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHP 128

Query: 130 TPSTPST-----------------------PSTPSTPSTPSTP-STPGTPTTPF------ 189
           TPS P +                       P TP    +P TP   PGTP TPF      
Sbjct: 129 TPSHPPSGGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPAPFP 188

Query: 190 ----TCNFWLNHPGMIWGVLGWWGTLGNCFGA----TNVPGFGTNLNLLQALSNTRADGF 248
               TC++W NHP +IWG+LGWWGT+G  FG     +++PGF  ++NLLQALSNTR+D  
Sbjct: 189 PITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRSDPI 248

[Close]

BLAST of Csor.00g132590 vs. NCBI nr
Match: KAG6604731.1 (Protodermal factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 476 bits (1226), Expect = 3.90e-169
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS 120
           HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS 120

Query: 121 TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ 180
           TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ
Sbjct: 121 TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ 180

Query: 181 ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL 240
           ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL
Sbjct: 181 ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL 240

Query: 241 ANEGKIKLTA 250
           ANEGKIKLTA
Sbjct: 241 ANEGKIKLTA 250

[Close]

BLAST of Csor.00g132590 vs. NCBI nr
Match: XP_022947015.1 (protodermal factor 1-like [Cucurbita moschata])

HSP 1 Score: 475 bits (1222), Expect = 1.59e-168
Identity = 249/250 (99.60%), Postives = 249/250 (99.60%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS 120
           HGYGGTPPHYSTPTPSTPTKSPS GSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS 120

Query: 121 TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ 180
           TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ
Sbjct: 121 TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ 180

Query: 181 ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL 240
           ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL
Sbjct: 181 ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL 240

Query: 241 ANEGKIKLTA 250
           ANEGKIKLTA
Sbjct: 241 ANEGKIKLTA 250

[Close]

BLAST of Csor.00g132590 vs. NCBI nr
Match: XP_023534009.1 (protodermal factor 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464 bits (1193), Expect = 4.66e-164
Identity = 246/253 (97.23%), Postives = 248/253 (98.02%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MRTKQASPLLFT+LAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTILAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPSTPSTP---STPS 120
           HGYGGTPPHYSTPTPSTPTKSPS GSGYYNPPSGGSTPTTPVDPGTPSTPSTP   STPS
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPSGGSTPTTPVDPGTPSTPSTPRTPSTPS 120

Query: 121 TPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLN 180
           TPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCF ATNVPGFGTNLN
Sbjct: 121 TPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFRATNVPGFGTNLN 180

Query: 181 LLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANI 240
           LLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSAL+SNRAAADQANI
Sbjct: 181 LLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALSSNRAAADQANI 240

Query: 241 FKLANEGKIKLTA 250
           FKLANEGKIKLTA
Sbjct: 241 FKLANEGKIKLTA 253

[Close]

BLAST of Csor.00g132590 vs. NCBI nr
Match: XP_022970795.1 (protodermal factor 1-like [Cucurbita maxima])

HSP 1 Score: 460 bits (1184), Expect = 1.14e-162
Identity = 247/254 (97.24%), Postives = 248/254 (97.64%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPS-GGSTPTTPVDPGTPSTPSTPSTPSTP 120
           HGYGGTPPHYSTPTPSTP+KSPS  SGYYNPPS GGSTPTTPVDPGTPSTPSTPSTPSTP
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSSGGSTPTTPVDPGTPSTPSTPSTPSTP 120

Query: 121 STPSTPSTPSTP---GTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180
           STPSTPSTPSTP   GTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL
Sbjct: 121 STPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180

Query: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240
           NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN
Sbjct: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240

Query: 241 IFKLANEGKIKLTA 250
           IFKLANEGKIKLTA
Sbjct: 241 IFKLANEGKIKLTA 254

[Close]

BLAST of Csor.00g132590 vs. NCBI nr
Match: XP_038900371.1 (protodermal factor 1-like [Benincasa hispida])

HSP 1 Score: 402 bits (1033), Expect = 8.09e-140
Identity = 216/250 (86.40%), Postives = 226/250 (90.40%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPP-DPHAGTPPTGSHSNPIPP 60
           MRTKQAS LLFTLLAGLLSQSLLIPV ST+IADQKSYYSPP DPH+GTPPTGSHS+PIPP
Sbjct: 1   MRTKQASVLLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPSDPHSGTPPTGSHSSPIPP 60

Query: 61  SHGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPS--GGSTPTTPVDPGTPSTPSTPSTPS 120
           SHGYGG+PPHYSTPTPSTP+K PSSG GYYNPPS  GGS PTTPVDPGTPSTPSTP    
Sbjct: 61  SHGYGGSPPHYSTPTPSTPSKPPSSGGGYYNPPSSGGGSPPTTPVDPGTPSTPSTPGV-- 120

Query: 121 TPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLN 180
                  PSTPSTP  PTTPFTCN+WLNHPGMIWGVLGWWGTLGN FGATNVPGFGTNLN
Sbjct: 121 -------PSTPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLN 180

Query: 181 LLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANI 240
           LLQALSNTR DGFGALLREGTASYLNSLASNRFPFTTKQV++SFVSAL+SN+AAADQAN 
Sbjct: 181 LLQALSNTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNKAAADQANT 240

Query: 241 FKLANEGKIK 247
           FKLANEGKIK
Sbjct: 241 FKLANEGKIK 241

[Close]

BLAST of Csor.00g132590 vs. ExPASy TrEMBL
Match: A0A6J1G5M6 (protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=1)

HSP 1 Score: 475 bits (1222), Expect = 7.69e-169
Identity = 249/250 (99.60%), Postives = 249/250 (99.60%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS 120
           HGYGGTPPHYSTPTPSTPTKSPS GSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS
Sbjct: 61  HGYGGTPPHYSTPTPSTPTKSPSGGSGYYNPPSGGSTPTTPVDPGTPSTPSTPSTPSTPS 120

Query: 121 TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ 180
           TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ
Sbjct: 121 TPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLLQ 180

Query: 181 ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL 240
           ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL
Sbjct: 181 ALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFKL 240

Query: 241 ANEGKIKLTA 250
           ANEGKIKLTA
Sbjct: 241 ANEGKIKLTA 250

[Close]

BLAST of Csor.00g132590 vs. ExPASy TrEMBL
Match: A0A6J1I3W1 (protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1)

HSP 1 Score: 460 bits (1184), Expect = 5.51e-163
Identity = 247/254 (97.24%), Postives = 248/254 (97.64%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS
Sbjct: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPS-GGSTPTTPVDPGTPSTPSTPSTPSTP 120
           HGYGGTPPHYSTPTPSTP+KSPS  SGYYNPPS GGSTPTTPVDPGTPSTPSTPSTPSTP
Sbjct: 61  HGYGGTPPHYSTPTPSTPSKSPSGRSGYYNPPSSGGSTPTTPVDPGTPSTPSTPSTPSTP 120

Query: 121 STPSTPSTPSTP---GTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180
           STPSTPSTPSTP   GTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL
Sbjct: 121 STPSTPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNL 180

Query: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240
           NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN
Sbjct: 181 NLLQALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQAN 240

Query: 241 IFKLANEGKIKLTA 250
           IFKLANEGKIKLTA
Sbjct: 241 IFKLANEGKIKLTA 254

[Close]

BLAST of Csor.00g132590 vs. ExPASy TrEMBL
Match: A0A5A7UHX0 (Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00090 PE=4 SV=1)

HSP 1 Score: 376 bits (965), Expect = 6.94e-130
Identity = 204/248 (82.26%), Postives = 219/248 (88.31%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MR+KQAS LLFTLLAGLLSQSLLIPVLST+I DQKSYYSPPDPH+G+PP+GSH +PIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPS-GGSTPTTPVDPGTPSTPSTPSTPSTP 120
           HG GGTP HYSTPTPSTP    S G GYYNPPS GGS P+TPVDPGTPSTPSTPS     
Sbjct: 61  HGNGGTP-HYSTPTPSTP----SGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSV---- 120

Query: 121 STPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLL 180
                PSTPSTP  PTTPFTCN+WLNHPG+IWGVLGWWGTLGN FGATNVPGFGTNLNLL
Sbjct: 121 -----PSTPSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLL 180

Query: 181 QALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFK 240
           QALSNTR DG+GALLREGTASYLNSLASNRFP+TTKQV++SFVSAL+SN+AA DQAN FK
Sbjct: 181 QALSNTRNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFK 234

Query: 241 LANEGKIK 247
           LANEGKIK
Sbjct: 241 LANEGKIK 234

[Close]

BLAST of Csor.00g132590 vs. ExPASy TrEMBL
Match: A0A1S3C4A9 (protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1)

HSP 1 Score: 376 bits (965), Expect = 6.94e-130
Identity = 204/248 (82.26%), Postives = 219/248 (88.31%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MR+KQAS LLFTLLAGLLSQSLLIPVLST+I DQKSYYSPPDPH+G+PP+GSH +PIPPS
Sbjct: 1   MRSKQASALLFTLLAGLLSQSLLIPVLSTSITDQKSYYSPPDPHSGSPPSGSHGSPIPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPS-GGSTPTTPVDPGTPSTPSTPSTPSTP 120
           HG GGTP HYSTPTPSTP    S G GYYNPPS GGS P+TPVDPGTPSTPSTPS     
Sbjct: 61  HGNGGTP-HYSTPTPSTP----SGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSV---- 120

Query: 121 STPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLL 180
                PSTPSTP  PTTPFTCN+WLNHPG+IWGVLGWWGTLGN FGATNVPGFGTNLNLL
Sbjct: 121 -----PSTPSTPTIPTTPFTCNYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLL 180

Query: 181 QALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFK 240
           QALSNTR DG+GALLREGTASYLNSLASNRFP+TTKQV++SFVSAL+SN+AA DQAN FK
Sbjct: 181 QALSNTRNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGDQANTFK 234

Query: 241 LANEGKIK 247
           LANEGKIK
Sbjct: 241 LANEGKIK 234

[Close]

BLAST of Csor.00g132590 vs. ExPASy TrEMBL
Match: A0A0A0KF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1)

HSP 1 Score: 374 bits (961), Expect = 3.25e-129
Identity = 200/248 (80.65%), Postives = 220/248 (88.71%), Query Frame = 0


Query: 1   MRTKQASPLLFTLLAGLLSQSLLIPVLSTTIADQKSYYSPPDPHAGTPPTGSHSNPIPPS 60
           MR+KQ S L+FTLLAGLLSQSLLIPVLST+IADQKSYYSPPDPH+G+PP+GSHS+P+PPS
Sbjct: 1   MRSKQVSALVFTLLAGLLSQSLLIPVLSTSIADQKSYYSPPDPHSGSPPSGSHSSPMPPS 60

Query: 61  HGYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPS-GGSTPTTPVDPGTPSTPSTPSTPSTP 120
           HG GGTP HYSTPTPSTP+  PS G GYYNPPS GGS P+TPVDPGTPSTPSTPS     
Sbjct: 61  HGSGGTP-HYSTPTPSTPSNPPSGGGGYYNPPSSGGSPPSTPVDPGTPSTPSTPSV---- 120

Query: 121 STPSTPSTPSTPGTPTTPFTCNFWLNHPGMIWGVLGWWGTLGNCFGATNVPGFGTNLNLL 180
                PSTP+TP  PT PFTC +WLNHPG+IWGVLGWWGTLGN FGATNVPGFGTNLNLL
Sbjct: 121 -----PSTPTTPTIPTIPFTCTYWLNHPGLIWGVLGWWGTLGNAFGATNVPGFGTNLNLL 180

Query: 181 QALSNTRADGFGALLREGTASYLNSLASNRFPFTTKQVQSSFVSALNSNRAAADQANIFK 240
           QALSNTR DG+GALLREGTASYLNSLASNRFP+TTKQV++SFVSAL+SN+AA +QAN FK
Sbjct: 181 QALSNTRNDGYGALLREGTASYLNSLASNRFPYTTKQVRTSFVSALSSNKAAGNQANTFK 238

Query: 241 LANEGKIK 247
           LANEGKIK
Sbjct: 241 LANEGKIK 238

[Close]

BLAST of Csor.00g132590 vs. TAIR 10
Match: AT2G42840.1 (protodermal factor 1 )

HSP 1 Score: 171.8 bits (434), Expect = 7.0e-43
Identity = 131/297 (44.11%), Postives = 167/297 (56.23%), Query Frame = 0


Query: 10  LFTLLAGLLSQSLLIPVLSTTIADQKSYY-SPPDPHAGTPPT-----------------G 69
           ++ L A LLSQ L   V S    D K+YY SPP    GTPP+                  
Sbjct: 9   VWALFAALLSQQLFASVASVRFEDAKTYYLSPPSGSHGTPPSHTPPSSNCGSPPYDPSPS 68

Query: 70  SHSNPIPPSH-GYGGTPPHYSTPTPSTPTKSPSSGSGYYNPPSGGSTPTTPVDPGTPS-- 129
           + S+P PPSH     TP H  TPTP TP+ +P+  +   N  S  S P+TP  P TPS  
Sbjct: 69  TPSHPSPPSHTPTPSTPSH--TPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHP 128

Query: 130 TPSTPST-----------------------PSTPSTPSTPSTP-STPGTPTTPF------ 189
           TPS P +                       P TP    +P TP   PGTP TPF      
Sbjct: 129 TPSHPPSGGYYSSPPPRTPVVVTPPSPIVDPGTPIIGGSPPTPIIDPGTPGTPFIPAPFP 188

Query: 190 ----TCNFWLNHPGMIWGVLGWWGTLGNCFGA----TNVPGFGTNLNLLQALSNTRADGF 248
               TC++W NHP +IWG+LGWWGT+G  FG     +++PGF  ++NLLQALSNTR+D  
Sbjct: 189 PITGTCDYWRNHPTLIWGLLGWWGTVGGAFGTVSIPSSIPGFDPHMNLLQALSNTRSDPI 248

The following BLAST results are available for this feature:

BLAST of Csor.00g132590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S728	9.9e-42	44.11	Protodermal factor 1 OS=Arabidopsis thaliana OX=3702 GN=PDF1 PE=2 SV=1	[more]

BLAST of Csor.00g132590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604731.1	3.90e-169	100.00	Protodermal factor 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022947015.1	1.59e-168	99.60	protodermal factor 1-like [Cucurbita moschata]	[more]
XP_023534009.1	4.66e-164	97.23	protodermal factor 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022970795.1	1.14e-162	97.24	protodermal factor 1-like [Cucurbita maxima]	[more]
XP_038900371.1	8.09e-140	86.40	protodermal factor 1-like [Benincasa hispida]	[more]

BLAST of Csor.00g132590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5M6	7.69e-169	99.60	protodermal factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111451018 PE=4 SV=...	[more]
A0A6J1I3W1	5.51e-163	97.24	protodermal factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111469672 PE=4 SV=1	[more]
A0A5A7UHX0	6.94e-130	82.26	Protodermal factor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C4A9	6.94e-130	82.26	protodermal factor 1-like OS=Cucumis melo OX=3656 GN=LOC103496321 PE=4 SV=1	[more]
A0A0A0KF76	3.25e-129	80.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G178950 PE=4 SV=1	[more]

BLAST of Csor.00g132590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42840.1	7.0e-43	44.11	protodermal factor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..134
None	No IPR available	PANTHER	PTHR33210:SF18	PROTODERMAL FACTOR 1	coord: 1..247
IPR039923	Protodermal factor 1	PANTHER	PTHR33210	PROTODERMAL FACTOR 1	coord: 1..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g132590.m01	Csor.00g132590.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane