Csor.00g132160 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g132160
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionLoricrin-like
LocationCsor_Chr02: 443808 .. 444053 (+)
RNA-Seq ExpressionCsor.00g132160
SyntenyCsor.00g132160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGGCCAATTCTTGCTGCTGCAGGCGGCGGCGGCGGCTTCCAAGATGTCACCTTGGTGAGCTCCGGCGGGCTGTTTTTGCTTTCAGCCATCCTTCTATCTATCTCTCTCGTATCAATGATCATATTTGCTTGCGGCAACTCTAATGACCCTAAAAGAAAGGACGGCGGTGGAGGTTGTGGTGGCGGTGATGGTGGCGGAGGTGGTGGCTGTGGTGGAGGCTGTGGTGGCTGTGGAGGTTGA

mRNA sequence

ATGGGCAGGCCAATTCTTGCTGCTGCAGGCGGCGGCGGCGGCTTCCAAGATGTCACCTTGGTGAGCTCCGGCGGGCTGTTTTTGCTTTCAGCCATCCTTCTATCTATCTCTCTCGTATCAATGATCATATTTGCTTGCGGCAACTCTAATGACCCTAAAAGAAAGGACGGCGGTGGAGGTTGTGGTGGCGGTGATGGTGGCGGAGGTGGTGGCTGTGGTGGAGGCTGTGGTGGCTGTGGAGGTTGA

Coding sequence (CDS)

ATGGGCAGGCCAATTCTTGCTGCTGCAGGCGGCGGCGGCGGCTTCCAAGATGTCACCTTGGTGAGCTCCGGCGGGCTGTTTTTGCTTTCAGCCATCCTTCTATCTATCTCTCTCGTATCAATGATCATATTTGCTTGCGGCAACTCTAATGACCCTAAAAGAAAGGACGGCGGTGGAGGTTGTGGTGGCGGTGATGGTGGCGGAGGTGGTGGCTGTGGTGGAGGCTGTGGTGGCTGTGGAGGTTGA

Protein sequence

MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGGCGGGDGGGGGGCGGGCGGCGG
Homology
BLAST of Csor.00g132160 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137 bits (346), Expect = 1.91e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60
          MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGGG 60

Query: 61 CGGGDGGGGGGCGGGCGGCGG 81
          CGGGDGGGGGGCGGGCGGCGG
Sbjct: 61 CGGGDGGGGGGCGGGCGGCGG 81

BLAST of Csor.00g132160 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 6.00e-16
Identity = 62/89 (69.66%), Postives = 67/89 (75.28%), Query Frame = 0

Query: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSN-DPKRKDGGG 60
          MGR I AA GGG G  DVTL SSGGL LL+ +LLS+SLVSMIIFACG+S+ D KRK  GG
Sbjct: 1  MGRSIPAADGGGLG--DVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRNGG 60

Query: 61 GCGGGDGGG-------GGGCGGGCGGCGG 81
          GCGGG GGG       GGGCGGG GGCGG
Sbjct: 61 GCGGGGGGGCGGDVGGGGGCGGGGGGCGG 87

BLAST of Csor.00g132160 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 9.28e-15
Identity = 54/77 (70.13%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNS---NDPKRKDG 60
          MGRPI AA GGG G  DVTL SSGGL LL+ IL+S+SLVSMIIFACG+S   N  KR  G
Sbjct: 1  MGRPIPAADGGGLG--DVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGG 60

Query: 61 GGG--CGGGDGGGGGGC 72
          GGG  CGGG  GGGGGC
Sbjct: 61 GGGAGCGGGGCGGGGGC 75

BLAST of Csor.00g132160 vs. NCBI nr
Match: XP_034695771.1 (glycine-rich protein 5-like [Vitis riparia])

HSP 1 Score: 62.4 bits (150), Expect = 1.93e-10
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0

Query: 2  GRPILAAAGGGGGFQDVTLV--SSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGGG 61
          G   L   GGGGG + V +V  SSG L LL  I++S+S++SM+IFACG+S+  +R  GGG
Sbjct: 4  GLMALGGGGGGGGGEQVGMVASSSGALLLLCMIIMSLSIISMVIFACGDSSTSRRGGGGG 63

Query: 62 GCGGGDG--GGGGGCGGGCGGCGG 81
          G GGG G  GGGGGCGGG GGCGG
Sbjct: 64 GGGGGGGCGGGGGGCGGGGGGCGG 87

BLAST of Csor.00g132160 vs. NCBI nr
Match: KAG6604775.1 (hypothetical protein SDJN03_02092, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 1.51e-08
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRK 55
          MGRP+LA+  GG   +DV +VSSGG FLLSAI +SIS + MI+ A  NS+D ++K
Sbjct: 1  MGRPVLASHDGG--LEDVAVVSSGGFFLLSAIFMSISFILMIVVAGMNSDDSQKK 53

BLAST of Csor.00g132160 vs. ExPASy TrEMBL
Match: A0A5N5GBC1 (Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034934 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.01e-08
Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 1  MGRPILAAAGGGGGFQDVTLV--SSGGLFLLSAILLSISLVSMIIFACGNSNDPKRK--- 60
          M R  +   GG  G  D+ +   +SGGL LL  IL+S+SLVSM+IFACG+ +D KR+   
Sbjct: 1  MARTYVGPGGGHAGGVDIMMPDHNSGGLLLLCMILMSLSLVSMVIFACGDGSDEKRRRPG 60

Query: 61 -------DGGGGCGGGDGGG-----GGGCGGG 75
                  GGGGCGGG GGG     GGGCGGG
Sbjct: 61 RPGGVVGGGGGGCGGGSGGGCGDGGGGGCGGG 92

BLAST of Csor.00g132160 vs. ExPASy TrEMBL
Match: A0A0A0LJD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.80e-07
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGG 58
          MGRPI A  G      DVT    GGL LLS ILLSISL+SMIIFAC N  + +R+ GG
Sbjct: 1  MGRPIAATIG------DVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGG 52

BLAST of Csor.00g132160 vs. ExPASy TrEMBL
Match: F6GYM8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0054g00570 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.16e-07
Identity = 43/86 (50.00%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDP----KRKD 60
          M R ++A   GGGG   +   SSG LFLL  +++S+S++SM+IFACG S+      KR+ 
Sbjct: 1  MARVLMAV--GGGGEVGMMASSSGALFLLCMVVMSLSILSMVIFACGESSSTPHPKKRRH 60

Query: 61 GGGG------CGGGDGGGGGGCGGGC 76
          GGGG      CGGG GGG GG GGGC
Sbjct: 61 GGGGGGDGGGCGGGGGGGDGGGGGGC 84

BLAST of Csor.00g132160 vs. ExPASy TrEMBL
Match: A0A540LEY3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029325 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.20e-06
Identity = 43/92 (46.74%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 1  MGRPILAAAGGGGGFQDVTLV--SSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKDGG 60
          M R  +   GG  G   + +   +SGGL LL  IL+S+SL+SM+IFACG+S+   R  GG
Sbjct: 1  MARTYVGLGGGHAGEVAIMMPDHNSGGLLLLCMILMSLSLISMVIFACGDSSGKPRPGGG 60

Query: 61 G---------------GCGGGDGGGGGGCGGG 75
          G               GCGGG GGGGGGCGGG
Sbjct: 61 GYTGGAGGCGGGGGGGGCGGGGGGGGGGCGGG 92

BLAST of Csor.00g132160 vs. ExPASy TrEMBL
Match: M5WY52 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G116900 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.01e-06
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 11 GGGGFQDVTLV--SSGGLFLLSAILLSISLVSMIIFACGNSNDPKRK------DGGGGCG 67
          GGG  +++ ++  +SGG+FLL  ILLS+SL+SM+IFACG+     +K       GGGGCG
Sbjct: 10 GGGHAEELGIMQDNSGGIFLLCMILLSLSLISMVIFACGDDEGSSKKRYGGRGSGGGGCG 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6604774.11.91e-40100.00hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603228.16.00e-1669.66hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603229.19.28e-1570.13hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_034695771.11.93e-1058.33glycine-rich protein 5-like [Vitis riparia][more]
KAG6604775.11.51e-0856.36hypothetical protein SDJN03_02092, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5N5GBC13.01e-0850.00Loricrin-like OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034934 P... [more]
A0A0A0LJD51.80e-0758.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062640 PE=4 SV=1[more]
F6GYM86.16e-0750.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0054g00570 PE=4 SV=... [more]
A0A540LEY31.20e-0646.74Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_029325 PE=4 SV=1[more]
M5WY522.01e-0650.77Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_3G116900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420OS02G0198500 PROTEINcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g132160.m01Csor.00g132160.m01mRNA