Csor.00g132150 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g132150
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 445014 .. 445280 (+)
RNA-Seq ExpressionCsor.00g132150
SyntenyCsor.00g132150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCTGTTCTTGCCTCCCATGACGGCGGCCTTGAAGATGTCGCCGTCGTCAGCTCCGGCGGCTTCTTTTTACTTTCCGCCATCTTTATGTCAATCTCTTTCATATTAATGATCGTTGTTGCTGGTATGAACTCCGATGATTCCCAAAAGAAAGCAGACGTGGCAGCTGGAGGCGGAGATTGTGGCTGTGCTGCCTGTTCTGGCTGTGTCGACTGCTACGGCAGCGGTGGTTGTGACGGCTTTGGCGGAGGCTGTTTTTAG

mRNA sequence

ATGGGAAGGCCTGTTCTTGCCTCCCATGACGGCGGCCTTGAAGATGTCGCCGTCGTCAGCTCCGGCGGCTTCTTTTTACTTTCCGCCATCTTTATGTCAATCTCTTTCATATTAATGATCGTTGTTGCTGGTATGAACTCCGATGATTCCCAAAAGAAAGCAGACGTGGCAGCTGGAGGCGGAGATTGTGGCTGTGCTGCCTGTTCTGGCTGTGTCGACTGCTACGGCAGCGGTGGTTGTGACGGCTTTGGCGGAGGCTGTTTTTAG

Coding sequence (CDS)

ATGGGAAGGCCTGTTCTTGCCTCCCATGACGGCGGCCTTGAAGATGTCGCCGTCGTCAGCTCCGGCGGCTTCTTTTTACTTTCCGCCATCTTTATGTCAATCTCTTTCATATTAATGATCGTTGTTGCTGGTATGAACTCCGATGATTCCCAAAAGAAAGCAGACGTGGCAGCTGGAGGCGGAGATTGTGGCTGTGCTGCCTGTTCTGGCTGTGTCGACTGCTACGGCAGCGGTGGTTGTGACGGCTTTGGCGGAGGCTGTTTTTAG

Protein sequence

MGRPVLASHDGGLEDVAVVSSGGFFLLSAIFMSISFILMIVVAGMNSDDSQKKADVAAGGGDCGCAACSGCVDCYGSGGCDGFGGGCF
Homology
BLAST of Csor.00g132150 vs. NCBI nr
Match: KAG6604775.1 (hypothetical protein SDJN03_02092, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173 bits (439), Expect = 2.03e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MGRPVLASHDGGLEDVAVVSSGGFFLLSAIFMSISFILMIVVAGMNSDDSQKKADVAAGG 60
          MGRPVLASHDGGLEDVAVVSSGGFFLLSAIFMSISFILMIVVAGMNSDDSQKKADVAAGG
Sbjct: 1  MGRPVLASHDGGLEDVAVVSSGGFFLLSAIFMSISFILMIVVAGMNSDDSQKKADVAAGG 60

Query: 61 GDCGCAACSGCVDCYGSGGCDGFGGGCF 88
          GDCGCAACSGCVDCYGSGGCDGFGGGCF
Sbjct: 61 GDCGCAACSGCVDCYGSGGCDGFGGGCF 88

BLAST of Csor.00g132150 vs. NCBI nr
Match: KAG6604774.1 (hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 3.09e-11
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 0

Query: 1  MGRPVLASHDGG--LEDVAVVSSGGFFLLSAIFMSISFILMIVVAGMNSDDSQKKADVAA 60
          MGRP+LA+  GG   +DV +VSSGG FLLSAI +SIS + MI+ A  NS+D ++K     
Sbjct: 1  MGRPILAAAGGGGGFQDVTLVSSGGLFLLSAILLSISLVSMIIFACGNSNDPKRKD---- 60

Query: 61 GGGDCGCAACSGCVDCYGSGGCDGFGGGC 87
          GGG CG        D  G GGC G  GGC
Sbjct: 61 GGGGCGGG------DGGGGGGCGGGCGGC 79

BLAST of Csor.00g132150 vs. NCBI nr
Match: KAG6603228.1 (hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 1.76e-09
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 0

Query: 1  MGRPVLASHDGGLEDVAVVSSGGFFLLSAIFMSISFILMIVVA-GMNSDDSQKKADVAAG 60
          MGR + A+  GGL DV + SSGG  LL+ + +S+S + MI+ A G +S D+++K +    
Sbjct: 1  MGRSIPAADGGGLGDVTLFSSGGLLLLATVLLSLSLVSMIIFACGDSSSDNKRKRN---- 60

Query: 61 GGDCGCAACSGCV-DCYGSGGCDGFGGGC 87
          GG CG     GC  D  G GGC G GGGC
Sbjct: 61 GGGCGGGGGGGCGGDVGGGGGCGGGGGGC 85

BLAST of Csor.00g132150 vs. NCBI nr
Match: KAG6603229.1 (hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.8 bits (138), Expect = 1.00e-08
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 1  MGRPVLASHDGGLEDVAVVSSGGFFLLSAIFMSISFILMIVVA-GMNSDDSQKKADVAAG 60
          MGRP+ A+  GGL DV + SSGG  LL+ I MS+S + MI+ A G +S  +++K +   G
Sbjct: 1  MGRPIPAADGGGLGDVTLFSSGGLLLLATILMSLSLVSMIIFACGDSSRKNKRKRNGGGG 60

Query: 61 GGDCGCAACSG 70
          G  CG   C G
Sbjct: 61 GAGCGGGGCGG 71

BLAST of Csor.00g132150 vs. NCBI nr
Match: KAG2685935.1 (hypothetical protein I3760_10G150100 [Carya illinoinensis])

HSP 1 Score: 48.9 bits (115), Expect = 7.74e-05
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 0

Query: 5  VLASH-DGGLEDVAVVSSGGFFLLSAIFMSISFILMIVVAGMNS---DDSQKKADVAAGG 64
          V A+H DGG +++A VSSGG  LL  I   +S + M++ A ++    D+  +K    A G
Sbjct: 11 VAAAHADGGSDNIAFVSSGGLVLLGMIVTFLSIVSMVIFACVDPPGYDNKDRKRKPEASG 70

Query: 65 GDCGCAACSGCVDCYGSGGCDG---FGGGC 87
          GDCG  +C G       GGCDG    GGGC
Sbjct: 71 GDCGDCSCLGDF-----GGCDGGTGCGGGC 95

BLAST of Csor.00g132150 vs. ExPASy TrEMBL
Match: A5B1D1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g02090 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.33e-04
Identity = 38/89 (42.70%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 7  ASHDGGLEDVAVVSSGGFFLLSAIFMSISFILMIVVAGMNSDDS---QKKADVAAGG--- 66
          A H G +E   +VSSGG FLL  IFM++S I M++ A  + +     +KK D+  GG   
Sbjct: 12 ADHQGLME---LVSSGGLFLLCMIFMTLSIISMVIFACADHNSGSRRKKKGDLVCGGCGG 71

Query: 67 -GDCGCAACSGCVDCYGSGGCD-GFGGGC 87
           G CGC        C G GGC  G GGGC
Sbjct: 72 GGGCGCGG----GGCGGGGGCGCGGGGGC 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6604775.12.03e-54100.00hypothetical protein SDJN03_02092, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604774.13.09e-1150.56hypothetical protein SDJN03_02091, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603228.11.76e-0944.94hypothetical protein SDJN03_03837, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603229.11.00e-0845.07hypothetical protein SDJN03_03838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG2685935.17.74e-0541.11hypothetical protein I3760_10G150100 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
A5B1D11.33e-0442.70Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g02090 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g132150.m01Csor.00g132150.m01mRNA