Csor.00g130950 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g130950
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	lipid-binding serum glycoprotein family protein
Location	Csor_Chr02: 971661 .. 972632 (-)
RNA-Seq Expression	Csor.00g130950
Synteny	Csor.00g130950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCACATCTGCGGTCATATCCCAAAAGGGTTGCTGATTGGCAAGGCAATTTCTTGTGTGATTCCGATCAATTTGGCTGAATCTGAAAAAACTATCAAAATCCCAATTGTTGGAAACGTTGATATTCCTTCCTCGGATGTCAAACCGGGTGATTCGGGTGTTTTAATTCCTATAGTAATTGGCTTGTTCCAGCGGAGATTTCTGATAAACGACGTGCTTCTTCTGTTCAGGTGTATGCTTTGTTGGTTAGGGATTATCACAGAGTTCTAAATCATCTCAGAATTCAGTCTCAAGTTTGTGTAAGTTATCCGGTTTTGTTACCAATGAGTTTTGTAGCTTTTCTGCACTAAATTGTGATTGACATGAGCTTGAATATCTCCTTTTCTTCTCCTCCAGTCATAAGAATTTCAGAGCACCAGATTTTTTATAATCAGCGTAGTAGAAGAAGGTGAATGGATACCAGTTGCGTGCATCACAATGGTAAGTTTCTCGGTGAAGGATCGGGATATCATTACTTGAATTCATGCATCAACCTATGATCCACCCTTTAGGATTGGGATATCATTACTTGCATTCATGCATCAACCTATGATCAACTATTCAGTTAACGGACGTGAGACTCCTCTTCCAACAATTCTCAACAGTATCCGGTCCGAAATCTCAGAAAACAACCTCATGGGCAGCACGGGTTTGGATGATTTTGAGATGCCATGGAAGTGGAGCAATATTGGGAATCTGCATAGGCACCTAATTCAGAACATTCTACAAGTTGTTCTGTTTCAAGCCAACTTATCATCCATCGACGTCGCAAATTTGCAGCCAGTTGCTCATGCCGTATGCAAACGCATACTTGAACGACGGGTTGCCACTGGCCACTGTCCGTGGCTTCACGTTTCAAAATGCCGATGTAATCATCTCCTTGCTCGAGAATTACGGTGTAGCAGCGACATTCATAAAAAAGTTGAATGA

mRNA sequence

ATGCTTCACATCTGCGGTCATATCCCAAAAGGGTTGCTGATTGGCAAGGCAATTTCTTGTGTGATTCCGATCAATTTGGCTGAATCTGAAAAAACTATCAAAATCCCAATTGTTGGAAACGTTGATATTCCTTCCTCGGATGTCAAACCGGGTGATTCGGGTGTTTTAATTCCTATAGGATTATCACAGAGTTCTAAATCATCTCAGAATTCAGTCTCAAGTTTGTTCATAAGAATTTCAGAGCACCAGATTTTTTATAATCAGCGTAGTAGAAGAAGCACGGGTTTGGATGATTTTGAGATGCCATGGAAGTGGAGCAATATTGGGAATCTGCATAGGCACCTAATTCAGAACATTCTACAAGTTGTTCTGTTTCAAGCCAACTTATCATCCATCGACGTCGCAAATTTGCAGCCAGTTGCTCATGCCGTATGCAAACGCATACTTGAACGACGGGTTGCCACTGGCCACTGTCCGTGGCTTCACGTTTCAAAATGCCGATGTAATCATCTCCTTGCTCGAGAATTACGGTGTAGCAGCGACATTCATAAAAAAGTTGAATGA

Coding sequence (CDS)

ATGCTTCACATCTGCGGTCATATCCCAAAAGGGTTGCTGATTGGCAAGGCAATTTCTTGTGTGATTCCGATCAATTTGGCTGAATCTGAAAAAACTATCAAAATCCCAATTGTTGGAAACGTTGATATTCCTTCCTCGGATGTCAAACCGGGTGATTCGGGTGTTTTAATTCCTATAGGATTATCACAGAGTTCTAAATCATCTCAGAATTCAGTCTCAAGTTTGTTCATAAGAATTTCAGAGCACCAGATTTTTTATAATCAGCGTAGTAGAAGAAGCACGGGTTTGGATGATTTTGAGATGCCATGGAAGTGGAGCAATATTGGGAATCTGCATAGGCACCTAATTCAGAACATTCTACAAGTTGTTCTGTTTCAAGCCAACTTATCATCCATCGACGTCGCAAATTTGCAGCCAGTTGCTCATGCCGTATGCAAACGCATACTTGAACGACGGGTTGCCACTGGCCACTGTCCGTGGCTTCACGTTTCAAAATGCCGATGTAATCATCTCCTTGCTCGAGAATTACGGTGTAGCAGCGACATTCATAAAAAAGTTGAATGA

Protein sequence

MLHICGHIPKGLLIGKAISCVIPINLAESEKTIKIPIVGNVDIPSSDVKPGDSGVLIPIGLSQSSKSSQNSVSSLFIRISEHQIFYNQRSRRSTGLDDFEMPWKWSNIGNLHRHLIQNILQVVLFQANLSSIDVANLQPVAHAVCKRILERRVATGHCPWLHVSKCRCNHLLARELRCSSDIHKKVE

Homology

[Close]

BLAST of Csor.00g130950 vs. NCBI nr
Match: KAG6604893.1 (hypothetical protein SDJN03_02210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 376 bits (966), Expect = 1.36e-131
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLHICGHIPKGLLIGKAISCVIPINLAESEKTIKIPIVGNVDIPSSDVKPGDSGVLIPIG 60
           MLHICGHIPKGLLIGKAISCVIPINLAESEKTIKIPIVGNVDIPSSDVKPGDSGVLIPIG
Sbjct: 1   MLHICGHIPKGLLIGKAISCVIPINLAESEKTIKIPIVGNVDIPSSDVKPGDSGVLIPIG 60

Query: 61  LSQSSKSSQNSVSSLFIRISEHQIFYNQRSRRSTGLDDFEMPWKWSNIGNLHRHLIQNIL 120
           LSQSSKSSQNSVSSLFIRISEHQIFYNQRSRRSTGLDDFEMPWKWSNIGNLHRHLIQNIL
Sbjct: 61  LSQSSKSSQNSVSSLFIRISEHQIFYNQRSRRSTGLDDFEMPWKWSNIGNLHRHLIQNIL 120

Query: 121 QVVLFQANLSSIDVANLQPVAHAVCKRILERRVATGHCPWLHVSKCRCNHLLARELRCSS 180
           QVVLFQANLSSIDVANLQPVAHAVCKRILERRVATGHCPWLHVSKCRCNHLLARELRCSS
Sbjct: 121 QVVLFQANLSSIDVANLQPVAHAVCKRILERRVATGHCPWLHVSKCRCNHLLARELRCSS 180

Query: 181 DIHKKVE 187
           DIHKKVE
Sbjct: 181 DIHKKVE 187

[Close]

BLAST of Csor.00g130950 vs. NCBI nr
Match: XP_022943533.1 (putative BPI/LBP family protein At1g04970 [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 1.81e-09
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K LLI KAIS VIPINL ESEKT+KIP VGNV            D+PSSD+KPG+SGV I
Sbjct: 41  KDLLIDKAISSVIPINLPESEKTVKIPFVGNVLMRLSNTTIYRVDVPSSDIKPGESGVSI 100

[Close]

BLAST of Csor.00g130950 vs. NCBI nr
Match: XP_023512418.1 (putative BPI/LBP family protein At1g04970 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 1.81e-09
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K LLI KAIS VIPINL ESEKT+KIP VGNV            D+PSSD+KPG+SGV I
Sbjct: 41  KDLLIDKAISSVIPINLPESEKTVKIPFVGNVLMRLSNTTIYRVDVPSSDIKPGESGVSI 100

[Close]

BLAST of Csor.00g130950 vs. NCBI nr
Match: KAG7010764.1 (putative BPI/LBP family protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.4 bits (163), Expect = 2.51e-09
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K LLI KAIS V+PINL ESEKT+KIP VGNV            D+PSSD+KPG+SGV I
Sbjct: 41  KDLLIDKAISSVVPINLPESEKTVKIPFVGNVLMRLSNTTIYRVDVPSSDIKPGESGVSI 100

[Close]

BLAST of Csor.00g130950 vs. NCBI nr
Match: XP_022986302.1 (putative BPI/LBP family protein At1g04970 [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 1.54e-08
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K LLI KAIS V+PINL ESEK +KIP VGNV            D+PSSD+KPG+SGV I
Sbjct: 41  KDLLIDKAISSVVPINLPESEKKVKIPFVGNVLMRLSNTTIYRVDVPSSDIKPGESGVSI 100

[Close]

BLAST of Csor.00g130950 vs. ExPASy TrEMBL
Match: A0A6J1FX34 (putative BPI/LBP family protein At1g04970 OS=Cucurbita moschata OX=3662 GN=LOC111448280 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.76e-10
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K LLI KAIS VIPINL ESEKT+KIP VGNV            D+PSSD+KPG+SGV I
Sbjct: 41  KDLLIDKAISSVIPINLPESEKTVKIPFVGNVLMRLSNTTIYRVDVPSSDIKPGESGVSI 100

[Close]

BLAST of Csor.00g130950 vs. ExPASy TrEMBL
Match: A0A6J1J767 (putative BPI/LBP family protein At1g04970 OS=Cucurbita maxima OX=3661 GN=LOC111484088 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.44e-09
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K LLI KAIS V+PINL ESEK +KIP VGNV            D+PSSD+KPG+SGV I
Sbjct: 41  KDLLIDKAISSVVPINLPESEKKVKIPFVGNVLMRLSNTTIYRVDVPSSDIKPGESGVSI 100

[Close]

BLAST of Csor.00g130950 vs. ExPASy TrEMBL
Match: A0A0A0LQW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408380 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.62e-09
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K L I KAIS VIPINL +SEKT+KIP VGNV            D+PSS+VKPGDSGV I
Sbjct: 82  KDLFIDKAISSVIPINLPQSEKTVKIPFVGNVHMVLSNTTIYQLDVPSSNVKPGDSGVSI 141

[Close]

BLAST of Csor.00g130950 vs. ExPASy TrEMBL
Match: A0A6J1CGR0 (putative BPI/LBP family protein At1g04970 OS=Momordica charantia OX=3673 GN=LOC111011267 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.38e-08
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K LLI KAIS +IPINL +SEKT+KIP VGNV            D+ SS+VKPGDSGV I
Sbjct: 64  KDLLIDKAISSMIPINLPKSEKTVKIPFVGNVHMVLSNTTIYQVDVASSNVKPGDSGVAI 123

[Close]

BLAST of Csor.00g130950 vs. ExPASy TrEMBL
Match: A0A5D3BTV5 (Putative BPI/LBP family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold755G00190 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.68e-06
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 57
           K L I KAIS VIPI+L + +KT+KIP VGNV            D+PSS+VKPG+SG+ I
Sbjct: 46  KDLFIDKAISSVIPIHLPQFKKTVKIPFVGNVHMVLSNTTIYQVDVPSSNVKPGESGLSI 105

[Close]

BLAST of Csor.00g130950 vs. TAIR 10
Match: AT1G04970.1 (lipid-binding serum glycoprotein family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 93  STGLDDFEMPWKWSNIGNLHRHLIQNILQVVL 125
           S  L+DF M  KWSNIGNLH HL+Q I+  V+
Sbjct: 401 SVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVI 432

HSP 2 Score: 42.4 bits (98), Expect = 4.8e-04
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 10  KGLLIGKAISCVIPINLAESEKTIKIPIVGNV------------DIPSSDVKPGDSGVLI 58
           K LL+ KAI+ +IP+ +   EK++KIP +G +            D+ SS VK G++GV+I
Sbjct: 42  KNLLVNKAIASIIPLQIPRIEKSMKIPFLGGIDVVVSNLTIYELDVASSYVKLGETGVVI 101

[Close]

BLAST of Csor.00g130950 vs. TAIR 10
Match: AT1G04970.2 (lipid-binding serum glycoprotein family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 0


Query: 93  STGLDDFEMPWKWSNIGNLHRHLIQNILQVVL 125
           S  L+DF M  KWSNIGNLH HL+Q I+  V+
Sbjct: 262 SVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVI 293

The following BLAST results are available for this feature:

BLAST of Csor.00g130950 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g130950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604893.1	1.36e-131	100.00	hypothetical protein SDJN03_02210, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022943533.1	1.81e-09	63.33	putative BPI/LBP family protein At1g04970 [Cucurbita moschata]	[more]
XP_023512418.1	1.81e-09	63.33	putative BPI/LBP family protein At1g04970 isoform X1 [Cucurbita pepo subsp. pepo...	[more]
KAG7010764.1	2.51e-09	61.67	putative BPI/LBP family protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022986302.1	1.54e-08	60.00	putative BPI/LBP family protein At1g04970 [Cucurbita maxima]	[more]

BLAST of Csor.00g130950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FX34	8.76e-10	63.33	putative BPI/LBP family protein At1g04970 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1J767	7.44e-09	60.00	putative BPI/LBP family protein At1g04970 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0LQW5	7.62e-09	61.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408380 PE=4 SV=1	[more]
A0A6J1CGR0	6.38e-08	60.00	putative BPI/LBP family protein At1g04970 OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A5D3BTV5	5.68e-06	53.33	Putative BPI/LBP family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Csor.00g130950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04970.1	1.3e-04	59.38	lipid-binding serum glycoprotein family protein	[more]
AT1G04970.2	1.3e-04	59.38	lipid-binding serum glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46801	OS06G0309200 PROTEIN	coord: 10..56 coord: 74..125
None	No IPR available	PANTHER	PTHR46801:SF6	LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN	coord: 10..56 coord: 74..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g130950.m01	Csor.00g130950.m01	mRNA