Csor.00g130160 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g130160
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr02: 1421445 .. 1422407 (-)
RNA-Seq Expression	Csor.00g130160
Synteny	Csor.00g130160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAATCGGAAGGAAGAAGAAACCTTCAGTTCTCAATTTCATACAGTTGCTTCACTGCTCAGAGCATCAAATCACCTCGAAAATGCATTGATATTTGCTCATCAAAACCAAAAATGGAAGCAAAATGATCAATGTGCTGCAAATTCCGAGTAGATTTCACGAGCTGAAGGACGTAATGCTTAAAGACTCGCAGAAAGACACGTGGATCAGAACTATGGTCCTCGAAAGGTCAAAAAAATATATATATTATATAATGAAAAACTTATTTTAAGATAATTACACGATTAGTCCTTCAACTTTCAAGATTTTATCTTCAAAGTCCCTTATTATTTCTTTTATCATATTTTAACCAATAGATTGTCGTCTATCCAGTAATTATTGTTTGTTTTGGCTCGTTAAGTATTGTCGTTAGTTTACTTTTCTTGTGGGCAAGTGAGTTCGTTCCCCTCTCCGATCGATGCGAGATCTCATAATCTATTCCCTTCAAAGCCAATGTCCTCACTGTCACATCGCTCGGTGTCTAGCTATGATATCACTTGTAACAGCCCAAACCCACTACTAGCAAATATTGTCCATTTTGGCCTGTTATGTATCACCGTCACCCTGACGATTTCAAAACGTGTCTAGGAAAGAGAGGTTTACACGTCCTTTTAAGAAATGCTTAGTTCACCTAAAATCTCATATTGTATTAATGTTTTTGCATTCGAAGTGAAATGTCTTATTTGCCCTCCATTTAAAATCAACAAAGTAACGACTTTTCCTTCGTCGAAACTCCCTCGAGGTTGCCGCCGGTTCTCGCCGTCGTCCAGTCGAGGAGCTGCTAGAGATAAGGTCACGATCCGTCGATCTCTACCACCGAGTCGCGCACAAGGATCCGCTGGATTCAATCGTTCGTGTGATGCCGACATCACCAGAAGGCCGAACGCACCGCGAGATCATCTGGAGCAGGGGAATTTGTGA

mRNA sequence

ATGTGGAATCGGAAGGAAGAAGAAACCTTCAGTTCTCAATTTCATACAGTTGCTTCACTGCTCAGAGCATCAAATCACCTCGAAAATGCATTGATATTTGCTCATCAAAACCAAAAATGGAAGCAAAATGATCAATTGAAATGTCTTATTTGCCCTCCATTTAAAATCAACAAAGTAACGACTTTTCCTTCGTCGAAACTCCCTCGAGGTTGCCGCCGGTTCTCGCCGTCGTCCAGTCGAGGAGCTGCTAGAGATAAGGTCACGATCCGTCGATCTCTACCACCGAGTCGCGCACAAGGATCCGCTGGATTCAATCGTTCGTGTGATGCCGACATCACCAGAAGGCCGAACGCACCGCGAGATCATCTGGAGCAGGGGAATTTGTGA

Coding sequence (CDS)

ATGTGGAATCGGAAGGAAGAAGAAACCTTCAGTTCTCAATTTCATACAGTTGCTTCACTGCTCAGAGCATCAAATCACCTCGAAAATGCATTGATATTTGCTCATCAAAACCAAAAATGGAAGCAAAATGATCAATTGAAATGTCTTATTTGCCCTCCATTTAAAATCAACAAAGTAACGACTTTTCCTTCGTCGAAACTCCCTCGAGGTTGCCGCCGGTTCTCGCCGTCGTCCAGTCGAGGAGCTGCTAGAGATAAGGTCACGATCCGTCGATCTCTACCACCGAGTCGCGCACAAGGATCCGCTGGATTCAATCGTTCGTGTGATGCCGACATCACCAGAAGGCCGAACGCACCGCGAGATCATCTGGAGCAGGGGAATTTGTGA

Protein sequence

MWNRKEEETFSSQFHTVASLLRASNHLENALIFAHQNQKWKQNDQLKCLICPPFKINKVTTFPSSKLPRGCRRFSPSSSRGAARDKVTIRRSLPPSRAQGSAGFNRSCDADITRRPNAPRDHLEQGNL

Homology

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BLAST of Csor.00g130160 vs. NCBI nr
Match: KAG6604972.1 (hypothetical protein SDJN03_02289, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265 bits (677), Expect = 1.88e-89
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MWNRKEEETFSSQFHTVASLLRASNHLENALIFAHQNQKWKQNDQLKCLICPPFKINKVT 60
           MWNRKEEETFSSQFHTVASLLRASNHLENALIFAHQNQKWKQNDQLKCLICPPFKINKVT
Sbjct: 1   MWNRKEEETFSSQFHTVASLLRASNHLENALIFAHQNQKWKQNDQLKCLICPPFKINKVT 60

Query: 61  TFPSSKLPRGCRRFSPSSSRGAARDKVTIRRSLPPSRAQGSAGFNRSCDADITRRPNAPR 120
           TFPSSKLPRGCRRFSPSSSRGAARDKVTIRRSLPPSRAQGSAGFNRSCDADITRRPNAPR
Sbjct: 61  TFPSSKLPRGCRRFSPSSSRGAARDKVTIRRSLPPSRAQGSAGFNRSCDADITRRPNAPR 120

Query: 121 DHLEQGNL 128
           DHLEQGNL
Sbjct: 121 DHLEQGNL 128

The following BLAST results are available for this feature:

BLAST of Csor.00g130160 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g130160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604972.1	1.88e-89	100.00	hypothetical protein SDJN03_02289, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g130160 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g130160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g130160.m01	Csor.00g130160.m01	mRNA