Csor.00g127030 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g127030
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Auxin response factor
Location	Csor_Chr15: 3910330 .. 3912725 (+)
RNA-Seq Expression	Csor.00g127030
Synteny	Csor.00g127030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGTATGATTTGTTTTCTTTCTCTTTTGATTTTGATTTACTGCTTCAATTTGGGACGATTGAAATCCTGTTTTGAGCTGTTACTATGATTATGATGTGCCCCCTTTTTCGTTTTGTTGTTCTTTTTCTTCCTTTATTAAATGCTATGGTTCCCTCGTCACCCGCCATTAATTTTGATCTTCTGTGCTGAACTTTAATTATGGCGCTGTAATGATGATGATGATTATAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTTTACTTCCCTCAGGGTCACAGCGAACAGGTTCTATGGTTTTTTTTTTTTTTTTTTTTTGTTTCATTTTTTGTGGCTAGCCTTTTCATTTTAAGTTCTTATTTGCATGGAGAAAAGTTGAGAAGTTCTTTAATTAAATTAGTTGTCATTGCATAAACCTGTGAAATTGATAGGACTTTTCTGTTGTTTTGTTTGGTCTGTAGGTTGCTGCGACGACGAACAAAGAAGTTGATGGACACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAATGTTACAATGCATGTGGGTTCTCTATGTTTCATGTAATTTAAGTGTGTTTAGCTTCGTTACATGATTAATGGCGTAAATCTTTCATTAATCTCCTGTTAACCATGAATGTGGAAATGAAATTGATATAGCTAGGAGGGCTTTTAAGCAGGATTTGTATGTGTGACATTTCAGGCAGATGTGGAAACGGATGAAGTGTATGCCCAGATGACATTACAGCCGCTGACTGCAGTAAAATATCTCTACGACTCTGTTTCTCGTGCAGTTATTCTTGCCACGTTTATTAATATACCTTAGCTCAATTTATTTCATACGTACAGCAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCGAGTAGACAGCCAACAAATTACTTTTGCAAGACGTTGACAGCGAGTGATACAAGCACCCATGGAGGTTTCTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGTACATACATATATTCTGTTATATGATTCTGTTGGATCTGATGGATGACTTTTGACATCTTTCTTTGTTATGGTCCTGCAGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTCGAATGGAAGTTTAGGCATATTTTTCGAGGTAAGTCCCGTGAAGTTCTGTCCATTATCGGAAATAAGTGCGAAGGTTTTCTTTGTCAATGGTGAACGTCTCCTTTTTGGAAATAAGTGCGGAAGTTTTTTTTGTTAATGGTTTTTTAGTACTCTGATTTTGTTGCCATTTGGAATGAAGCTGTCAAGGAAATTATTAATATAATAATTTTTCTTTTGCTACGAAGTAATTGTGATATCGTGTTCATTAAATATACGACACTTCCAAGAGAGTTAGTTCTTACTAGAGTATGAACATACATTCAGTGTAGGTTTTGATAAATTAAGAGAAAGCCCTATACCAGCCAGAAATAAATTCAAGATGTCCCATCAATTTTGAAGAACTGTTTCATTAGGGTGAAAAATGATTGTATCATCAATCTATTGAAGAATGGAGACTTCGACCTGTTTCTACCAAACATAAAGCCCTTCAAAATTTTCTTAAGGCAATAATGAACTGAGCGACTAAGAGTATCTCCTATGATAGTAAAGAAGAAAAGAGAGAGGGGTCTCCCTGTCTCAAGACTCTTGTAGTCGCAAACTTTCCTCTAAATTGAATTCTGATTGGGTTTTGAAGATGGTGAAGAACGTAGACTAACTTTGTTATTGAAGGTTGATTGGGTTTGATTGATATTAAGTCCAAGAACAGGAGTCTTCTTGCAAAGTGGATTTGGATATTCTACAACGCAAGGATAGCCCTATGGAGACGTTTCATTGCAGCAATGTCTGACACATTCCGTCTTGGTAATCTCCTAGGCAACTGTAAGCTTAAAGCATCTTGGTGCCTTGAAGATACATTATGGAGTAGAGAGATATGGTCTATGATAATACTGTGAGTTTAATTGGTAATGGGAAGTCCACATCCTTCTCGAATGACCGTTGGATTGGTTTAGTGCTAAAAAACACGTGCCCAAGGCTCACGCTCTAGCCTTATGCAAAGACAACTCTATTGCAGATATATGGAAAGAGGAGGCAACCACTTGGGATTTGGGCCTTCGTCCAAGCCTTACCGAAGAAGAAATGAATGAGTGGACCAATCTATCCCACATTTCTTCTCCCTCCCCAAAGACCAAATTTCCGAGTCCATTGGAGATAGGCTCATGA

mRNA sequence

ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTTTACTTCCCTCAGGGTCACAGCGAACAGTCCAAGAACAGGAGTCTTCTTGCAAAGTGGATTTGGATATTCTACAACGCAAGGATAGCCCTATGGAGACGTTTCATTGCAGCAATGTCTGACACATTCCGTCTTGGTAATCTCCTAGGCAACTGTAAGCTTAAAGCATCTTGGTGCCTTGAAGATACATTATGGAGTAGAGAGATATGGTCTATGATAATACTTGCTAAAAAACACGTGCCCAAGGCTCACGCTCTAGCCTTATGCAAAGACAACTCTATTGCAGATATATGGAAAGAGGAGGCAACCACTTGGGATTTGGGCCTTCGTCCAAGCCTTACCGAAGAAGAAATGAATGAGTGGACCAATCTATCCCACATTTCTTCTCCCTCCCCAAAGACCAAATTTCCGAGTCCATTGGAGATAGGCTCATGA

Coding sequence (CDS)

ATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTTTACTTCCCTCAGGGTCACAGCGAACAGTCCAAGAACAGGAGTCTTCTTGCAAAGTGGATTTGGATATTCTACAACGCAAGGATAGCCCTATGGAGACGTTTCATTGCAGCAATGTCTGACACATTCCGTCTTGGTAATCTCCTAGGCAACTGTAAGCTTAAAGCATCTTGGTGCCTTGAAGATACATTATGGAGTAGAGAGATATGGTCTATGATAATACTTGCTAAAAAACACGTGCCCAAGGCTCACGCTCTAGCCTTATGCAAAGACAACTCTATTGCAGATATATGGAAAGAGGAGGCAACCACTTGGGATTTGGGCCTTCGTCCAAGCCTTACCGAAGAAGAAATGAATGAGTGGACCAATCTATCCCACATTTCTTCTCCCTCCCCAAAGACCAAATTTCCGAGTCCATTGGAGATAGGCTCATGA

Protein sequence

MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQSKNRSLLAKWIWIFYNARIALWRRFIAAMSDTFRLGNLLGNCKLKASWCLEDTLWSREIWSMIILAKKHVPKAHALALCKDNSIADIWKEEATTWDLGLRPSLTEEEMNEWTNLSHISSPSPKTKFPSPLEIGS

Homology

[Close]

BLAST of Csor.00g127030 vs. ExPASy Swiss-Prot
Match: Q9FGV1 (Auxin response factor 8 OS=Arabidopsis thaliana OX=3702 GN=ARF8 PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-20
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP++G+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]

BLAST of Csor.00g127030 vs. ExPASy Swiss-Prot
Match: Q9ZTX8 (Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.8e-17
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHE-GGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          M+LS++GF  Q HE  GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 54

[Close]

BLAST of Csor.00g127030 vs. ExPASy Swiss-Prot
Match: A2X1A1 (Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.7e-15
Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHE------GGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          MKLS S  G  D          E+KCLNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQ 59

[Close]

BLAST of Csor.00g127030 vs. ExPASy Swiss-Prot
Match: Q6H6V4 (Auxin response factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF6 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.7e-15
Identity = 40/59 (67.80%), Postives = 42/59 (71.19%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHE------GGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          MKLS S  G  D          E+KCLNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQ 59

[Close]

BLAST of Csor.00g127030 vs. ExPASy Swiss-Prot
Match: Q258Y5 (Auxin response factor 12 OS=Oryza sativa subsp. indica OX=39946 GN=ARF12 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.7e-15
Identity = 35/37 (94.59%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 17 EKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          EKKCLNSELWHACAGPLV LPT GTRVVYFPQGHSEQ
Sbjct: 24 EKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQ 60

[Close]

BLAST of Csor.00g127030 vs. NCBI nr
Match: KAG6579060.1 (Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 397 bits (1020), Expect = 7.91e-140
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQSKNRSLL 60
           MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQSKNRSLL
Sbjct: 1   MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQSKNRSLL 60

Query: 61  AKWIWIFYNARIALWRRFIAAMSDTFRLGNLLGNCKLKASWCLEDTLWSREIWSMIILAK 120
           AKWIWIFYNARIALWRRFIAAMSDTFRLGNLLGNCKLKASWCLEDTLWSREIWSMIILAK
Sbjct: 61  AKWIWIFYNARIALWRRFIAAMSDTFRLGNLLGNCKLKASWCLEDTLWSREIWSMIILAK 120

Query: 121 KHVPKAHALALCKDNSIADIWKEEATTWDLGLRPSLTEEEMNEWTNLSHISSPSPKTKFP 180
           KHVPKAHALALCKDNSIADIWKEEATTWDLGLRPSLTEEEMNEWTNLSHISSPSPKTKFP
Sbjct: 121 KHVPKAHALALCKDNSIADIWKEEATTWDLGLRPSLTEEEMNEWTNLSHISSPSPKTKFP 180

Query: 181 SPLEIGS 187
           SPLEIGS
Sbjct: 181 SPLEIGS 187

[Close]

BLAST of Csor.00g127030 vs. NCBI nr
Match: KAG6601996.1 (Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (293), Expect = 3.31e-29
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 53
          MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPT+GTRVVYFPQGHSEQ
Sbjct: 13 MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQ 65

[Close]

BLAST of Csor.00g127030 vs. NCBI nr
Match: KHN42895.1 (Auxin response factor 8 [Glycine soja])

HSP 1 Score: 111 bits (277), Expect = 3.29e-28
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQS 54
          MKLSTSG GQQ HEGGEKKCLNSELWHAC GPLVSLPTAGTRVVYFPQGH+EQ+
Sbjct: 1  MKLSTSGLGQQGHEGGEKKCLNSELWHACTGPLVSLPTAGTRVVYFPQGHNEQA 54

[Close]

BLAST of Csor.00g127030 vs. NCBI nr
Match: KAG4912084.1 (hypothetical protein JHK86_052517 [Glycine max] >KAG4926876.1 hypothetical protein JHK85_053362 [Glycine max] >KAG5082518.1 hypothetical protein JHK84_052556 [Glycine max] >KAG5085273.1 hypothetical protein JHK82_052670 [Glycine max] >RZB46660.1 Auxin response factor 8 [Glycine soja])

HSP 1 Score: 110 bits (276), Expect = 3.41e-28
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 53
          MKLSTSG GQQ HEGGEKKCLNSELWHAC GPLVSLPTAGTRVVYFPQGH+EQ
Sbjct: 1  MKLSTSGLGQQGHEGGEKKCLNSELWHACTGPLVSLPTAGTRVVYFPQGHNEQ 53

[Close]

BLAST of Csor.00g127030 vs. NCBI nr
Match: XP_015879655.1 (auxin response factor 8-like [Ziziphus jujuba])

HSP 1 Score: 112 bits (281), Expect = 1.72e-27
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 53
          MKLSTSG GQQDHEGGEKKCLNSELWHACAGPLVSLP+ GTRVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQDHEGGEKKCLNSELWHACAGPLVSLPSPGTRVVYFPQGHSEQ 53

[Close]

BLAST of Csor.00g127030 vs. ExPASy TrEMBL
Match: A0A0B2SCU1 (Auxin response factor 8 OS=Glycine soja OX=3848 GN=glysoja_049866 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.59e-28
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQS 54
          MKLSTSG GQQ HEGGEKKCLNSELWHAC GPLVSLPTAGTRVVYFPQGH+EQ+
Sbjct: 1  MKLSTSGLGQQGHEGGEKKCLNSELWHACTGPLVSLPTAGTRVVYFPQGHNEQA 54

[Close]

BLAST of Csor.00g127030 vs. ExPASy TrEMBL
Match: A0A445FCX3 (Auxin response factor 8 OS=Glycine soja OX=3848 GN=D0Y65_050624 PE=4 SV=1)

HSP 1 Score: 110 bits (276), Expect = 1.65e-28
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 53
          MKLSTSG GQQ HEGGEKKCLNSELWHAC GPLVSLPTAGTRVVYFPQGH+EQ
Sbjct: 1  MKLSTSGLGQQGHEGGEKKCLNSELWHACTGPLVSLPTAGTRVVYFPQGHNEQ 53

[Close]

BLAST of Csor.00g127030 vs. ExPASy TrEMBL
Match: A0A7C9F3D2 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 6.02e-28
Identity = 52/62 (83.87%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ---SKNR 59
          MKLSTSG GQQ HEGGEKKCLNSELWHACAGPLV LPTAG+RVVYFPQGHSEQ   S NR
Sbjct: 1  MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVCLPTAGSRVVYFPQGHSEQVAASTNR 60

[Close]

BLAST of Csor.00g127030 vs. ExPASy TrEMBL
Match: A0A6P3ZVS9 (auxin response factor 8-like OS=Ziziphus jujuba OX=326968 GN=LOC107415778 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 8.34e-28
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 53
          MKLSTSG GQQDHEGGEKKCLNSELWHACAGPLVSLP+ GTRVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQDHEGGEKKCLNSELWHACAGPLVSLPSPGTRVVYFPQGHSEQ 53

[Close]

BLAST of Csor.00g127030 vs. ExPASy TrEMBL
Match: K7MWU5 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G059600 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 9.40e-28
Identity = 48/53 (90.57%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 53
          MKLSTSG GQQ HEGGEKKCLNSELWHAC GPLVSLPTAGT VVYFPQGH+EQ
Sbjct: 1  MKLSTSGLGQQGHEGGEKKCLNSELWHACTGPLVSLPTAGTHVVYFPQGHNEQ 53

[Close]

BLAST of Csor.00g127030 vs. TAIR 10
Match: AT5G37020.1 (auxin response factor 8 )

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-21
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP++G+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]

BLAST of Csor.00g127030 vs. TAIR 10
Match: AT5G37020.2 (auxin response factor 8 )

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-21
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          MKLSTSG GQQ HEG  +KCLNSELWHACAGPLVSLP++G+RVVYFPQGHSEQ
Sbjct: 1  MKLSTSGLGQQGHEG--EKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

[Close]

BLAST of Csor.00g127030 vs. TAIR 10
Match: AT1G30330.1 (auxin response factor 6 )

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          M+LS++GF  Q HE GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHE-GEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 52

[Close]

BLAST of Csor.00g127030 vs. TAIR 10
Match: AT1G30330.2 (auxin response factor 6 )

HSP 1 Score: 89.4 bits (220), Expect = 3.4e-18
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHE-GGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          M+LS++GF  Q HE  GEK+ LNSELWHACAGPLVSLP  G+RVVYFPQGHSEQ
Sbjct: 1  MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 54

[Close]

BLAST of Csor.00g127030 vs. TAIR 10
Match: AT1G19220.1 (auxin response factor 19 )

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1  MKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQ 54
          MK  ++GF    +E GEKK +NS+LWHACAGPLVSLP  G+ VVYFPQGHSEQ
Sbjct: 1  MKAPSNGFLPSSNE-GEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQ 52

The following BLAST results are available for this feature:

BLAST of Csor.00g127030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGV1	6.1e-20	84.91	Auxin response factor 8 OS=Arabidopsis thaliana OX=3702 GN=ARF8 PE=1 SV=2	[more]
Q9ZTX8	4.8e-17	75.93	Auxin response factor 6 OS=Arabidopsis thaliana OX=3702 GN=ARF6 PE=1 SV=2	[more]
A2X1A1	7.7e-15	67.80	Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1	[more]
Q6H6V4	7.7e-15	67.80	Auxin response factor 6 OS=Oryza sativa subsp. japonica OX=39947 GN=ARF6 PE=1 SV...	[more]
Q258Y5	7.7e-15	94.59	Auxin response factor 12 OS=Oryza sativa subsp. indica OX=39946 GN=ARF12 PE=3 SV...	[more]

BLAST of Csor.00g127030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579060.1	7.91e-140	100.00	Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6601996.1	3.31e-29	98.11	Auxin response factor 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KHN42895.1	3.29e-28	90.74	Auxin response factor 8 [Glycine soja]	[more]
KAG4912084.1	3.41e-28	92.45	hypothetical protein JHK86_052517 [Glycine max] >KAG4926876.1 hypothetical prote...	[more]
XP_015879655.1	1.72e-27	94.34	auxin response factor 8-like [Ziziphus jujuba]	[more]

BLAST of Csor.00g127030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0B2SCU1	1.59e-28	90.74	Auxin response factor 8 OS=Glycine soja OX=3848 GN=glysoja_049866 PE=4 SV=1	[more]
A0A445FCX3	1.65e-28	92.45	Auxin response factor 8 OS=Glycine soja OX=3848 GN=D0Y65_050624 PE=4 SV=1	[more]
A0A7C9F3D2	6.02e-28	83.87	Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A6P3ZVS9	8.34e-28	94.34	auxin response factor 8-like OS=Ziziphus jujuba OX=326968 GN=LOC107415778 PE=4 S...	[more]
K7MWU5	9.40e-28	90.57	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_19G059600 PE=4 SV=1	[more]

BLAST of Csor.00g127030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37020.1	4.3e-21	84.91	auxin response factor 8	[more]
AT5G37020.2	4.3e-21	84.91	auxin response factor 8	[more]
AT1G30330.1	1.5e-18	77.36	auxin response factor 6	[more]
AT1G30330.2	3.4e-18	75.93	auxin response factor 6	[more]
AT1G19220.1	1.0e-14	67.92	auxin response factor 19	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..187
None	No IPR available	PANTHER	PTHR31384:SF85	AUXIN RESPONSE FACTOR	coord: 1..54
IPR044835	Auxin response factor	PANTHER	PTHR31384	AUXIN RESPONSE FACTOR 4-RELATED	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g127030.m01	Csor.00g127030.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009725	response to hormone
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding