Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAACAGCTTCCTGTTCTTCTATTTACCTCTTTTGAAGCTACGATTTTTGGATGTGTTTTGTTCAATGAAGAACTCTGTTTCTTCTGATTGTGAGATGGACGATCCTGTTTTTGATGATTTTGATCCTCGCCTCAACTTTTCCAAGGTGATTCAGTAATGTTCTTTTGTTCAATTCTTCATCTCTTAGATTCATCTGATATCTTTATGTAAATGTGGTTGTGAATTTTCCAGTTCTTGGAAGAAGCAAAACATCATGCCACAGAACAAGAAACAGGAGCCAAATGGTTGCCACCACAGAAAAAAAGCAAGAAATCTTGGAAAAACACACTCTTCTCCTGGTTAAAAAGTGATAAAAGGACCAAGCCTCCGCCCAAACCAGGTACAAATCCTCACATACCCAGTACAAGGCGTGTTCATGTTTCTGGTCCAATTTACACCAGAGCTACGGCCATAGACGGCAGATCTCGAGGCGGCCGTTCGACGTCTGGACCGATTGCTAGTCTCTTCAGTCCCAGTTTGAGTACAGAGATGGAGATCCCTTATATGTGTCTTCACCAGCTTACTAGCCCCAATACAAACCACAATTATGGTCCAATTTATCTTGTTACATAG
mRNA sequence
ATGCATAACAGCTTCCTGTTCTTCTATTTACCTCTTTTGAAGCTACGATTTTTGGATGTGTTTTGTTCAATGAAGAACTCTGTTTCTTCTGATTGTGAGATGGACGATCCTGTTTTTGATGATTTTGATCCTCGCCTCAACTTTTCCAAGTTCTTGGAAGAAGCAAAACATCATGCCACAGAACAAGAAACAGGAGCCAAATGGTTGCCACCACAGAAAAAAAGCAAGAAATCTTGGAAAAACACACTCTTCTCCTGGTTAAAAAGTGATAAAAGGACCAAGCCTCCGCCCAAACCAGGTACAAATCCTCACATACCCAGTACAAGGCGTGTTCATGTTTCTGGTCCAATTTACACCAGAGCTACGGCCATAGACGGCAGATCTCGAGGCGGCCGTTCGACGTCTGGACCGATTGCTAGTCTCTTCAGTCCCAGTTTGAGTACAGAGATGGAGATCCCTTATATGTGTCTTCACCAGCTTACTAGCCCCAATACAAACCACAATTATGGTCCAATTTATCTTGTTACATAG
Coding sequence (CDS)
ATGCATAACAGCTTCCTGTTCTTCTATTTACCTCTTTTGAAGCTACGATTTTTGGATGTGTTTTGTTCAATGAAGAACTCTGTTTCTTCTGATTGTGAGATGGACGATCCTGTTTTTGATGATTTTGATCCTCGCCTCAACTTTTCCAAGTTCTTGGAAGAAGCAAAACATCATGCCACAGAACAAGAAACAGGAGCCAAATGGTTGCCACCACAGAAAAAAAGCAAGAAATCTTGGAAAAACACACTCTTCTCCTGGTTAAAAAGTGATAAAAGGACCAAGCCTCCGCCCAAACCAGGTACAAATCCTCACATACCCAGTACAAGGCGTGTTCATGTTTCTGGTCCAATTTACACCAGAGCTACGGCCATAGACGGCAGATCTCGAGGCGGCCGTTCGACGTCTGGACCGATTGCTAGTCTCTTCAGTCCCAGTTTGAGTACAGAGATGGAGATCCCTTATATGTGTCTTCACCAGCTTACTAGCCCCAATACAAACCACAATTATGGTCCAATTTATCTTGTTACATAG
Protein sequence
MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHATEQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTRATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT
Homology
BLAST of Csor.00g123950 vs. NCBI nr
Match:
KAG6581796.1 (hypothetical protein SDJN03_21798, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 363 bits (933), Expect = 6.34e-127
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query: 1 MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT 60
MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT
Sbjct: 1 MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT 60
Query: 61 EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTR 120
EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTR
Sbjct: 61 EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTR 120
Query: 121 ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT
Sbjct: 121 ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
BLAST of Csor.00g123950 vs. NCBI nr
Match:
KAG7018247.1 (hypothetical protein SDJN02_20115 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 358 bits (919), Expect = 8.66e-125
Identity = 174/176 (98.86%), Postives = 175/176 (99.43%), Query Frame = 0
Query: 1 MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT 60
MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT
Sbjct: 1 MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT 60
Query: 61 EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTR 120
EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRT+P PKPGTNPHIPSTRRVHVSGPIYTR
Sbjct: 61 EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTEPLPKPGTNPHIPSTRRVHVSGPIYTR 120
Query: 121 ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT
Sbjct: 121 ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
BLAST of Csor.00g123950 vs. NCBI nr
Match:
XP_023527883.1 (uncharacterized protein LOC111790969 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 353 bits (907), Expect = 5.85e-123
Identity = 171/176 (97.16%), Postives = 175/176 (99.43%), Query Frame = 0
Query: 1 MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT 60
MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEM+DPVFDDFDPRLNFSKFLEEAKHHAT
Sbjct: 1 MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMNDPVFDDFDPRLNFSKFLEEAKHHAT 60
Query: 61 EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTR 120
EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKP PKPGTNPHIP+TRRVHVSGPI+TR
Sbjct: 61 EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPLPKPGTNPHIPNTRRVHVSGPIFTR 120
Query: 121 ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
ATAIDGRSRGGRSTSGPIASLFSPSLS+EMEIPYMCLHQLTSPNTNHNYGPIYLVT
Sbjct: 121 ATAIDGRSRGGRSTSGPIASLFSPSLSSEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
BLAST of Csor.00g123950 vs. NCBI nr
Match:
XP_022980730.1 (uncharacterized protein LOC111480012 [Cucurbita maxima])
HSP 1 Score: 341 bits (874), Expect = 6.31e-118
Identity = 165/176 (93.75%), Postives = 169/176 (96.02%), Query Frame = 0
Query: 1 MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT 60
MHNSFLFFYLPLLKLRFLDVFCS+K SVSSDCEM+DPVFDDFDPRLNFSKFLEEAKH AT
Sbjct: 1 MHNSFLFFYLPLLKLRFLDVFCSLKKSVSSDCEMNDPVFDDFDPRLNFSKFLEEAKHRAT 60
Query: 61 EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTR 120
EQETG KWLPPQKKSKKSWKNT FSWLKSDKRTKP PKPGTNPHIP+TRRVHVSGPIYTR
Sbjct: 61 EQETGVKWLPPQKKSKKSWKNTPFSWLKSDKRTKPLPKPGTNPHIPNTRRVHVSGPIYTR 120
Query: 121 ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
TAIDGRSRGGRSTSGPIASLFSPSLS+EMEIPYMCLHQLT PNTNHNYGPIYLVT
Sbjct: 121 TTAIDGRSRGGRSTSGPIASLFSPSLSSEMEIPYMCLHQLTCPNTNHNYGPIYLVT 176
BLAST of Csor.00g123950 vs. NCBI nr
Match:
XP_022152626.1 (uncharacterized protein LOC111020302 [Momordica charantia])
HSP 1 Score: 223 bits (568), Expect = 1.70e-71
Identity = 116/164 (70.73%), Postives = 127/164 (77.44%), Query Frame = 0
Query: 24 MKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT----------EQETGAKWLPPQK 83
M SVS D EMDDP FD+FDPRL+FSKFLEEAKHHAT E+E G KWL +K
Sbjct: 1 MNKSVSPDLEMDDPGFDEFDPRLSFSKFLEEAKHHATVQDFKASKSTEEEAGRKWLGQEK 60
Query: 84 KSKKSWKNTLFSWLKSDKRTKPPPKPGTN-PHIPSTRRVHVSGPIYTRATAIDGRSRGGR 143
KSKKSWK T+FSWLKSDK++KP PKP N PH S R VHVSGPIYT A DGR R R
Sbjct: 61 KSKKSWKTTIFSWLKSDKKSKPLPKPEINHPHTSSKRLVHVSGPIYTGAMTTDGRPRR-R 120
Query: 144 STSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
TSGPIASLF+PS+ TEMEIPYMCLHQLTSPN++HNYGPIYLVT
Sbjct: 121 PTSGPIASLFNPSMRTEMEIPYMCLHQLTSPNSSHNYGPIYLVT 163
BLAST of Csor.00g123950 vs. ExPASy TrEMBL
Match:
A0A6J1IXC2 (uncharacterized protein LOC111480012 OS=Cucurbita maxima OX=3661 GN=LOC111480012 PE=4 SV=1)
HSP 1 Score: 341 bits (874), Expect = 3.05e-118
Identity = 165/176 (93.75%), Postives = 169/176 (96.02%), Query Frame = 0
Query: 1 MHNSFLFFYLPLLKLRFLDVFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT 60
MHNSFLFFYLPLLKLRFLDVFCS+K SVSSDCEM+DPVFDDFDPRLNFSKFLEEAKH AT
Sbjct: 1 MHNSFLFFYLPLLKLRFLDVFCSLKKSVSSDCEMNDPVFDDFDPRLNFSKFLEEAKHRAT 60
Query: 61 EQETGAKWLPPQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTR 120
EQETG KWLPPQKKSKKSWKNT FSWLKSDKRTKP PKPGTNPHIP+TRRVHVSGPIYTR
Sbjct: 61 EQETGVKWLPPQKKSKKSWKNTPFSWLKSDKRTKPLPKPGTNPHIPNTRRVHVSGPIYTR 120
Query: 121 ATAIDGRSRGGRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
TAIDGRSRGGRSTSGPIASLFSPSLS+EMEIPYMCLHQLT PNTNHNYGPIYLVT
Sbjct: 121 TTAIDGRSRGGRSTSGPIASLFSPSLSSEMEIPYMCLHQLTCPNTNHNYGPIYLVT 176
BLAST of Csor.00g123950 vs. ExPASy TrEMBL
Match:
A0A6J1DIA9 (uncharacterized protein LOC111020302 OS=Momordica charantia OX=3673 GN=LOC111020302 PE=4 SV=1)
HSP 1 Score: 223 bits (568), Expect = 8.23e-72
Identity = 116/164 (70.73%), Postives = 127/164 (77.44%), Query Frame = 0
Query: 24 MKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT----------EQETGAKWLPPQK 83
M SVS D EMDDP FD+FDPRL+FSKFLEEAKHHAT E+E G KWL +K
Sbjct: 1 MNKSVSPDLEMDDPGFDEFDPRLSFSKFLEEAKHHATVQDFKASKSTEEEAGRKWLGQEK 60
Query: 84 KSKKSWKNTLFSWLKSDKRTKPPPKPGTN-PHIPSTRRVHVSGPIYTRATAIDGRSRGGR 143
KSKKSWK T+FSWLKSDK++KP PKP N PH S R VHVSGPIYT A DGR R R
Sbjct: 61 KSKKSWKTTIFSWLKSDKKSKPLPKPEINHPHTSSKRLVHVSGPIYTGAMTTDGRPRR-R 120
Query: 144 STSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
TSGPIASLF+PS+ TEMEIPYMCLHQLTSPN++HNYGPIYLVT
Sbjct: 121 PTSGPIASLFNPSMRTEMEIPYMCLHQLTSPNSSHNYGPIYLVT 163
BLAST of Csor.00g123950 vs. ExPASy TrEMBL
Match:
A0A0A0LC20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646660 PE=4 SV=1)
HSP 1 Score: 216 bits (549), Expect = 6.00e-69
Identity = 110/162 (67.90%), Postives = 126/162 (77.78%), Query Frame = 0
Query: 24 MKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHATEQ---------ETGAKWLPPQKK 83
MK S+S D EM++P FDDFD LNFSKFLEEAKHHAT+Q ET KWL +KK
Sbjct: 1 MKKSISLDYEMENPGFDDFDIGLNFSKFLEEAKHHATQQHFKAASIEEETERKWLAQEKK 60
Query: 84 SKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTRATAIDGRSRGGRST 143
+KKSWKNTLFSWLKSDK++K PKP NPH P+ RRV+VSGPIY+ A IDGR R R
Sbjct: 61 NKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPIYSEAMTIDGRPRR-RPM 120
Query: 144 SGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
SGPIASLF+P++ TE EIPYMCLHQL++PNTN NYGPIYLVT
Sbjct: 121 SGPIASLFNPTMRTETEIPYMCLHQLSAPNTNQNYGPIYLVT 161
BLAST of Csor.00g123950 vs. ExPASy TrEMBL
Match:
A0A1S3CCA9 (uncharacterized protein LOC103499209 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499209 PE=4 SV=1)
HSP 1 Score: 207 bits (528), Expect = 1.07e-65
Identity = 108/166 (65.06%), Postives = 126/166 (75.90%), Query Frame = 0
Query: 20 VFCSMKNSVSSDCEMDDPVFDDFDPRLNFSKFLEEAKHHAT---------EQETGAKWLP 79
+FCSMK S S D EM++ FDDFD LNFS FLEEAKHHAT E+E G K L
Sbjct: 1 MFCSMKKSDSLDYEMENTGFDDFDIGLNFSMFLEEAKHHATRQHLKAASIEEERGRKRLA 60
Query: 80 PQKKSKKSWKNTLFSWLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTRATAIDGRSRG 139
+KK+KKSWKNTLFSWLKSDK++K PKP NPH P+ RRV+VSGP+Y+ AT +GR R
Sbjct: 61 QEKKNKKSWKNTLFSWLKSDKKSKSLPKPEKNPHTPNKRRVYVSGPMYSEATTTNGRPRR 120
Query: 140 GRSTSGPIASLFSPSLSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
R SGPIASLF+PS+ TE EIPYMCL QL++PN+NHNYGPIYLVT
Sbjct: 121 -RPMSGPIASLFNPSMRTETEIPYMCLQQLSAPNSNHNYGPIYLVT 165
BLAST of Csor.00g123950 vs. ExPASy TrEMBL
Match:
A0A6J1GB15 (uncharacterized protein LOC111452535 OS=Cucurbita moschata OX=3662 GN=LOC111452535 PE=4 SV=1)
HSP 1 Score: 206 bits (525), Expect = 1.87e-65
Identity = 108/151 (71.52%), Postives = 115/151 (76.16%), Query Frame = 0
Query: 34 MDDPVFDDFDPRLNFSKFLEEAKHHA--------TEQETGAKWLPPQKKSKKSWKNTLFS 93
MDDP FDDFDPR NFSKFLEEAKHHA T++ETG KWL KKSKKSWKNTLFS
Sbjct: 1 MDDPCFDDFDPRTNFSKFLEEAKHHAKEEDFKASTQEETGRKWLAQHKKSKKSWKNTLFS 60
Query: 94 WLKSDKRTKPPPKPGTNPHIPSTRRVHVSGPIYTRATAIDGRSRGGRSTSGPIASLFSPS 153
WL SDK +K PK N H + RRVHVSG IYT AT +DGR R R TSGPIASLF+PS
Sbjct: 61 WLNSDKTSKSLPKLERNSHTSNKRRVHVSGLIYTGATTVDGRPRH-RPTSGPIASLFNPS 120
Query: 154 LSTEMEIPYMCLHQLTSPNTNHNYGPIYLVT 176
+ TEMEIPYMCLHQLTSP NH YGPIYLVT
Sbjct: 121 MRTEMEIPYMCLHQLTSPIPNHYYGPIYLVT 150
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6581796.1 | 6.34e-127 | 100.00 | hypothetical protein SDJN03_21798, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7018247.1 | 8.66e-125 | 98.86 | hypothetical protein SDJN02_20115 [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
XP_023527883.1 | 5.85e-123 | 97.16 | uncharacterized protein LOC111790969 [Cucurbita pepo subsp. pepo] | [more] |
XP_022980730.1 | 6.31e-118 | 93.75 | uncharacterized protein LOC111480012 [Cucurbita maxima] | [more] |
XP_022152626.1 | 1.70e-71 | 70.73 | uncharacterized protein LOC111020302 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1IXC2 | 3.05e-118 | 93.75 | uncharacterized protein LOC111480012 OS=Cucurbita maxima OX=3661 GN=LOC111480012... | [more] |
A0A6J1DIA9 | 8.23e-72 | 70.73 | uncharacterized protein LOC111020302 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A0A0LC20 | 6.00e-69 | 67.90 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G646660 PE=4 SV=1 | [more] |
A0A1S3CCA9 | 1.07e-65 | 65.06 | uncharacterized protein LOC103499209 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A6J1GB15 | 1.87e-65 | 71.52 | uncharacterized protein LOC111452535 OS=Cucurbita moschata OX=3662 GN=LOC1114525... | [more] |
Match Name | E-value | Identity | Description | |