Csor.00g123240 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g123240
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 5809128 .. 5809603 (+)
RNA-Seq Expression	Csor.00g123240
Synteny	Csor.00g123240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGTAGGTAACACAATAACAAACATAAACCACAAATCCAGTAATCAAAGCACTAAGCCAATCATTATAAATTCAAAACATCCATTCACAAACTGCTATTAACTTCTCATGCTGTAGTCTTGGACTCCATGACCGAGTCATAAGAAGCATGTACTCCAATCAAGATATAGTAAATCAACAGAATCCCAGTCCATATTTTGAACCTTTCGAATGAAGCTTTGTCGATGGAGCCAAAAGGAAAAGGTTGATGGCGATCGACAGTGAAGGCAGCCACGGGACAAGCGGCACGCCCCACACGCGAGGCTTTTTGGCTTGTGGGACACCGAGCCATATGGAATTGGACACCACCAAGCTGATCCAGCTGTCGCTTGAGCCCCAGTACACGGCAGTTGCTATTGAAGATCCCACGATTAGAACCAGGCAGATTATGAGCTTCTTTCGGTCGGATGGGGTCGTTTCACCGTTGACGTAG

mRNA sequence

ATGAATGGTAGCTTTGTCGATGGAGCCAAAAGGAAAAGGTTGATGGCGATCGACAGTGAAGGCAGCCACGGGACAAGCGGCACGCCCCACACGCGAGGCTTTTTGGCTTGTGGGACACCGAGCCATATGGAATTGGACACCACCAAGCTGATCCAGCTGTCGCTTGAGCCCCAGTACACGGCAGTTGCTATTGAAGATCCCACGATTAGAACCAGGCAGATTATGAGCTTCTTTCGGTCGGATGGGGTCGTTTCACCGTTGACGTAG

Coding sequence (CDS)

ATGAATGGTAGCTTTGTCGATGGAGCCAAAAGGAAAAGGTTGATGGCGATCGACAGTGAAGGCAGCCACGGGACAAGCGGCACGCCCCACACGCGAGGCTTTTTGGCTTGTGGGACACCGAGCCATATGGAATTGGACACCACCAAGCTGATCCAGCTGTCGCTTGAGCCCCAGTACACGGCAGTTGCTATTGAAGATCCCACGATTAGAACCAGGCAGATTATGAGCTTCTTTCGGTCGGATGGGGTCGTTTCACCGTTGACGTAG

Protein sequence

MNGSFVDGAKRKRLMAIDSEGSHGTSGTPHTRGFLACGTPSHMELDTTKLIQLSLEPQYTAVAIEDPTIRTRQIMSFFRSDGVVSPLT

Homology

[Close]

BLAST of Csor.00g123240 vs. NCBI nr
Match: KAG6607559.1 (hypothetical protein SDJN03_00901, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179 bits (454), Expect = 1.04e-56
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MNGSFVDGAKRKRLMAIDSEGSHGTSGTPHTRGFLACGTPSHMELDTTKLIQLSLEPQYT 60
          MNGSFVDGAKRKRLMAIDSEGSHGTSGTPHTRGFLACGTPSHMELDTTKLIQLSLEPQYT
Sbjct: 1  MNGSFVDGAKRKRLMAIDSEGSHGTSGTPHTRGFLACGTPSHMELDTTKLIQLSLEPQYT 60

Query: 61 AVAIEDPTIRTRQIMSFFRSDGVVSPLT 88
          AVAIEDPTIRTRQIMSFFRSDGVVSPLT
Sbjct: 61 AVAIEDPTIRTRQIMSFFRSDGVVSPLT 88

[Close]

BLAST of Csor.00g123240 vs. NCBI nr
Match: KAB8080455.1 (hypothetical protein EE612_000992, partial [Oryza sativa])

HSP 1 Score: 53.5 bits (127), Expect = 8.58e-06
Identity = 37/97 (38.14%), Postives = 45/97 (46.39%), Query Frame = 0


Query: 1   MNGSFVDGAKRKRLMAIDSEGSHGTSGTPHTRGFLACGTPS--------HMELDTTKLIQ 60
           MN        RKRL+A+DS+GSHGTSGTPHT G  A GT S        H    T     
Sbjct: 10  MNACAPSEPMRKRLVAMDSDGSHGTSGTPHTLGARAAGTRSWMPSVPAAHAGTSTVYPTH 69

Query: 61  LS-LEPQYTAVAIEDPTIRTRQIMSFFRSDGVVSPLT 88
            S   PQY A+  ++P        S      +V+P T
Sbjct: 70  RSGAAPQYAAMPADEPMTTDSNATSRLACVLLVTPRT 106

[Close]

BLAST of Csor.00g123240 vs. NCBI nr
Match: BAS70977.1 (Os01g0209901, partial [Oryza sativa Japonica Group])

HSP 1 Score: 53.5 bits (127), Expect = 8.58e-06
Identity = 37/97 (38.14%), Postives = 45/97 (46.39%), Query Frame = 0


Query: 1   MNGSFVDGAKRKRLMAIDSEGSHGTSGTPHTRGFLACGTPS--------HMELDTTKLIQ 60
           MN        RKRL+A+DS+GSHGTSGTPHT G  A GT S        H    T     
Sbjct: 10  MNACAPSEPMRKRLVAMDSDGSHGTSGTPHTLGARAAGTRSWMPSVPAAHAGTSTVYPTH 69

Query: 61  LS-LEPQYTAVAIEDPTIRTRQIMSFFRSDGVVSPLT 88
            S   PQY A+  ++P        S      +V+P T
Sbjct: 70  RSGAAPQYAAMPADEPMTTDSNATSRLACVLLVTPRT 106

[Close]

BLAST of Csor.00g123240 vs. ExPASy TrEMBL
Match: J3KXJ2 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.65e-06
Identity = 35/87 (40.23%), Postives = 44/87 (50.57%), Query Frame = 0


Query: 11  RKRLMAIDSEGSHGTSGTPHTRGFLACGTPS--------HMELDTTKLIQLS-LEPQYTA 70
           RKRL+A+DS+GSHGTSGTPHT G  A GT S        H    T      S  +PQY A
Sbjct: 20  RKRLVAMDSDGSHGTSGTPHTLGARAAGTSSWMPSVPAAHAGTSTVYPTHRSGAKPQYAA 79

Query: 71  VAIEDPTIRTRQIMSFFRSDGVVSPLT 88
           +  ++P        S      +V+P T
Sbjct: 80  MPADEPITTASSTTSRVACVLLVTPRT 106

[Close]

BLAST of Csor.00g123240 vs. ExPASy TrEMBL
Match: A0A0N7KCJ3 (Os01g0209901 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0209901 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.16e-06
Identity = 37/97 (38.14%), Postives = 45/97 (46.39%), Query Frame = 0


Query: 1   MNGSFVDGAKRKRLMAIDSEGSHGTSGTPHTRGFLACGTPS--------HMELDTTKLIQ 60
           MN        RKRL+A+DS+GSHGTSGTPHT G  A GT S        H    T     
Sbjct: 10  MNACAPSEPMRKRLVAMDSDGSHGTSGTPHTLGARAAGTRSWMPSVPAAHAGTSTVYPTH 69

Query: 61  LS-LEPQYTAVAIEDPTIRTRQIMSFFRSDGVVSPLT 88
            S   PQY A+  ++P        S      +V+P T
Sbjct: 70  RSGAAPQYAAMPADEPMTTDSNATSRLACVLLVTPRT 106

The following BLAST results are available for this feature:

BLAST of Csor.00g123240 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g123240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607559.1	1.04e-56	100.00	hypothetical protein SDJN03_00901, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB8080455.1	8.58e-06	38.14	hypothetical protein EE612_000992, partial [Oryza sativa]	[more]
BAS70977.1	8.58e-06	38.14	Os01g0209901, partial [Oryza sativa Japonica Group]	[more]

BLAST of Csor.00g123240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
J3KXJ2	1.65e-06	40.23	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]
A0A0N7KCJ3	4.16e-06	38.14	Os01g0209901 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os01...	[more]

BLAST of Csor.00g123240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g123240.m01	Csor.00g123240.m01	mRNA