Csor.00g123170 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g123170
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr01: 6018432 .. 6019264 (-)
RNA-Seq Expression	Csor.00g123170
Synteny	Csor.00g123170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACGCTTGATAACGCAGACATGAGCTTTCTGCTCCATGACCAGCCCTTGGCCCCCATCGAGGACGAAATCACCATGAGACCAAAGACAAAGACAAGGTCCCTCACTGCAGGGACCAAGGACCTAGTGGACCCTGTGTTATCGTGCCTCCTTAAGGGTCGGGCAGTGGTGGACATACTGAAGAGGGAGACGTTGTTGGCAGGGCGGAGGAGATGACAACACTGGGCATTGAGGGCGCACTGCAGAGACATGCCATGAAGGTGGACAAGGTTTACACCACACTATATGCACCAACGCACATTAAGTCTGTCGTTTCCATGGGGGTCTCGGACCTGGACAAGTCTGTGCTTCTACCTGACATGGCACTTGATTGGAGGAGGATGAGGGTGTTCCGTGAGGCGGTTTTCTACCTCACATGCATGGTGGAAGGACACCCCAAAAAGAAGATGGCAGGGATCACTGTGTCGGGCCAGAGATCCGGCAGCAGGAAGAACATGATGGCGTTTACGCCTGTATCGGCAGGCTACTACATGGGGGTGTCGAATCTGGGACATGCAGTCGCTGGGCAACAGCGACATGGGGAAGGAATGCACTGCCACGCTCCTGGTAGAGGGGGCGTACATGTGGGCACTGAGGGCAAGATGCTTGTGCGCCCTAAATGTATCCACGCTCGCCCATGGGGAGAAGAAGCCCTCCGCGAACCACATCCTATTGAACAGCAAGATCGTGAACATACTACTCAAGCCTATCCTACTGAACAGCAAGATCGTGAACATACTACTCAAGCCTTCTCCCTAGATGGCCTACAAGGCTTGGAAGAATCACATTAA

mRNA sequence

ATGCCCACGCTTGATAACGCAGACATGAGCTTTCTGCTCCATGACCAGCCCTTGGCCCCCATCGAGGACGAAATCACCATGAGACCAAAGACAAAGACAAGTGGTGGACATACTGAAGAGGGAGACGTTGTTGGCAGGGCGGAGGAGATGACAACACTGGGCATTGAGGGCGCACTGCAGAGACATGCCATGAAGGTGGACAAGGTTTACACCACACTATATGCACCAACGCACATTAAGTCTGTCGTTTCCATGGGGGTCTCGGACCTGGACAAGTCTGTGCTTCTACCTGACATGGCACTTGATTGGAGGAGGATGAGGGTGTTCCGTGAGGCGGTTTTCTACCTCACATGCATGGTGGAAGGACACCCCAAAAAGAAGATGGCAGGGATCACTGTGTCGGGCCAGAGATCCGGCAGCAGGAAGAACATGATGGCGTTTACGCCTGTATCGGCAGGCTACTACATGGGGGTGTCGAATCTGGGACATGCAGTCGCTGGGCAACAGCGACATGGGGAAGGAATGCACTGCCACGCTCCTGGTAGAGGGGGCGTACATGTGGGCACTGAGGGCAAGATGCTTGTGCGCCCTAAATGTATCCACGCTCGCCCATGGGGAGAAGAAGCCCTCCGCGAACCACATCCTATTGAACAGCAAGATCGTGAACATACTACTCAAGCCTATCCTACTGAACAGCAAGATCGTGAACATACTACTCAAGCCTTCTCCCTAGATGGCCTACAAGGCTTGGAAGAATCACATTAA

Coding sequence (CDS)

ATGCCCACGCTTGATAACGCAGACATGAGCTTTCTGCTCCATGACCAGCCCTTGGCCCCCATCGAGGACGAAATCACCATGAGACCAAAGACAAAGACAAGTGGTGGACATACTGAAGAGGGAGACGTTGTTGGCAGGGCGGAGGAGATGACAACACTGGGCATTGAGGGCGCACTGCAGAGACATGCCATGAAGGTGGACAAGGTTTACACCACACTATATGCACCAACGCACATTAAGTCTGTCGTTTCCATGGGGGTCTCGGACCTGGACAAGTCTGTGCTTCTACCTGACATGGCACTTGATTGGAGGAGGATGAGGGTGTTCCGTGAGGCGGTTTTCTACCTCACATGCATGGTGGAAGGACACCCCAAAAAGAAGATGGCAGGGATCACTGTGTCGGGCCAGAGATCCGGCAGCAGGAAGAACATGATGGCGTTTACGCCTGTATCGGCAGGCTACTACATGGGGGTGTCGAATCTGGGACATGCAGTCGCTGGGCAACAGCGACATGGGGAAGGAATGCACTGCCACGCTCCTGGTAGAGGGGGCGTACATGTGGGCACTGAGGGCAAGATGCTTGTGCGCCCTAAATGTATCCACGCTCGCCCATGGGGAGAAGAAGCCCTCCGCGAACCACATCCTATTGAACAGCAAGATCGTGAACATACTACTCAAGCCTATCCTACTGAACAGCAAGATCGTGAACATACTACTCAAGCCTTCTCCCTAGATGGCCTACAAGGCTTGGAAGAATCACATTAA

Protein sequence

MPTLDNADMSFLLHDQPLAPIEDEITMRPKTKTSGGHTEEGDVVGRAEEMTTLGIEGALQRHAMKVDKVYTTLYAPTHIKSVVSMGVSDLDKSVLLPDMALDWRRMRVFREAVFYLTCMVEGHPKKKMAGITVSGQRSGSRKNMMAFTPVSAGYYMGVSNLGHAVAGQQRHGEGMHCHAPGRGGVHVGTEGKMLVRPKCIHARPWGEEALREPHPIEQQDREHTTQAYPTEQQDREHTTQAFSLDGLQGLEESH

Homology

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BLAST of Csor.00g123170 vs. NCBI nr
Match: KAG6607566.1 (hypothetical protein SDJN03_00908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 514 bits (1325), Expect = 4.28e-184
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MPTLDNADMSFLLHDQPLAPIEDEITMRPKTKTSGGHTEEGDVVGRAEEMTTLGIEGALQ 60
           MPTLDNADMSFLLHDQPLAPIEDEITMRPKTKTSGGHTEEGDVVGRAEEMTTLGIEGALQ
Sbjct: 1   MPTLDNADMSFLLHDQPLAPIEDEITMRPKTKTSGGHTEEGDVVGRAEEMTTLGIEGALQ 60

Query: 61  RHAMKVDKVYTTLYAPTHIKSVVSMGVSDLDKSVLLPDMALDWRRMRVFREAVFYLTCMV 120
           RHAMKVDKVYTTLYAPTHIKSVVSMGVSDLDKSVLLPDMALDWRRMRVFREAVFYLTCMV
Sbjct: 61  RHAMKVDKVYTTLYAPTHIKSVVSMGVSDLDKSVLLPDMALDWRRMRVFREAVFYLTCMV 120

Query: 121 EGHPKKKMAGITVSGQRSGSRKNMMAFTPVSAGYYMGVSNLGHAVAGQQRHGEGMHCHAP 180
           EGHPKKKMAGITVSGQRSGSRKNMMAFTPVSAGYYMGVSNLGHAVAGQQRHGEGMHCHAP
Sbjct: 121 EGHPKKKMAGITVSGQRSGSRKNMMAFTPVSAGYYMGVSNLGHAVAGQQRHGEGMHCHAP 180

Query: 181 GRGGVHVGTEGKMLVRPKCIHARPWGEEALREPHPIEQQDREHTTQAYPTEQQDREHTTQ 240
           GRGGVHVGTEGKMLVRPKCIHARPWGEEALREPHPIEQQDREHTTQAYPTEQQDREHTTQ
Sbjct: 181 GRGGVHVGTEGKMLVRPKCIHARPWGEEALREPHPIEQQDREHTTQAYPTEQQDREHTTQ 240

Query: 241 AFSLDGLQGLEESH 254
           AFSLDGLQGLEESH
Sbjct: 241 AFSLDGLQGLEESH 254

The following BLAST results are available for this feature:

BLAST of Csor.00g123170 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g123170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607566.1	4.28e-184	100.00	hypothetical protein SDJN03_00908, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g123170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g123170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g123170.m01	Csor.00g123170.m01	mRNA