Csor.00g119070 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g119070
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Actin-related protein 2/3 complex subunit 5
Location	Csor_Chr04: 20857924 .. 20860016 (+)
RNA-Seq Expression	Csor.00g119070
Synteny	Csor.00g119070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGATGCATTTGTGGGAGCAGATAATGCCGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTAATGATCTCTATATCTGCTGTTTGATTTCTAAGATTTAAATATGTTTAGCTCCTCCTAACTTCCATTTTTAATAATTGAAAATGCCTCGATTAGCAATTTGTTTACTCGTTCAGGTCTAAAACAGTCGAAGCTCTAAAAACTGCTCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGGTATCCCTTCTTTCATTTATGATCTCTTGCATGCTTCGTTATTGTTTTTCTACATCATGTTCTTTTTTCCTTGCAAGATCTAATAAGTTTTTGTGTTCATTATTATTAAATTTTTGGGTGATCTTTAGAAGTCTATAGGCAATTACGGTAGGTTCTCTGCTATCGGATGATAGTCATTTTCAATTATCGTGATCTTTTTTGAATGCTTTTCCTGTATTATCTCGATGATGGGGTCAATTAGAACTTGCTGGTAGTTGATATATTTTTCGGAAGTAGTCTGCTCCATTTGCTTGCAGCTGCTCAAAATGAATGGACGTGTTATATTTTAGGTTTACGTGTTGTGGGTCTGCCTGAATTGAACGAGAATTAAATAAATCTGATGTGATTTTTTGGACTTCTGCAGTCGGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTGAGTTCTTATGGTATTTAACTGCTAAGATGTCTATATTCCTATTGCTTCGATTATCTTTATGCGTATGAAGCTGGTTATTTTTTTTTTTTTATCTTTAACAAATTTTGAACTTCTAGCTCTGCTAAGATATGTTCATGTCGATAGGAGGTTGAAAGAAAAAAATGATATGTCCACGTTGATAGGGATTGTGTTAGTCCCTAGTGCTTGGATGATTGGATGGCTGATCTTCATAACCGTTTAGCTAGAAATACCTCGTCACATCTTCTTAAGTTAGAAGGTCACAACCAGCCTTTCTCTCAATACACAGCAGCACTTCATTCCACTGATTTCTGCCCCTTATTTGTCTCCCACATTAAGTTCTGAAGTTTTTCAGAATTTTGCTAATCTTTTATTAAGGGCATGTTTGAAATAACTTTCGAAGTGAAGTCATCCTAAACACCGATAAGAAATAAGTATGGGCCCTTGCCAACCCTGATTGCACTACGAAGTTAAAATTATACAGTCCCGGTCGGGTTTCTTGAGATTATTTTGGGTTTAAAATTCCAGCATGAGGGCATAGAATTTTGGGGAGTGATACAGACCAAATAACTATATCGATATTATGTAGAATGAAGAAATGAAAAAGGGCTAGTATTTTAGGAACTTTGAACCTTCTTCTTGAGTTCTTTTTTTTCAAGCTTAAACCAACTAAACTATTACCTACTTCAATCTCCTTCCCCTCCTAAAAAACCTCCTAGCTAATGACTATTATACCTTTACCAACCTAATGATATTTCTGGTTTCTTCTAGCCTGACAACATTCCTAACAGAAACCAAGGAGTTTGTGAAGACAGAAATCTTTTGAGAGTTTTTGTGATTTTGTACATTCTATGGTCAATTTGATGGAACGGCCAACTAGGATATTTATTTATACTGGCCAACTAGGCGAACATTGTTCAAACTTCTTTTCTTTTGTTTTCACCCAAATATAAGAAGTGTTTCATTACTAATGGAATGAGGACATGTTACACAACCCAATATCTTTGCAAGAAAGCGCCTATGAACTATCTTCTATTTCGTTGTATTCTCTTTTTCTGACCCATAATAGGTAACTTTTATTGGTCTTCCAGGCTGTTTTCTTGTTTCTTGAACTTGAGCATTGATTGACATAGATATACTAGTACTTACAGGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGA

mRNA sequence

ATGTCAGATGCATTTGTGGGAGCAGATAATGCCGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAAAACAGTCGAAGCTCTAAAAACTGCTCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGTCGGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGA

Coding sequence (CDS)

ATGTCAGATGCATTTGTGGGAGCAGATAATGCCGAAGCCATAATCACTAGAATTGAGCACAAATCTCGGAAGATCGAGAGCTTACTTAAACAGTCTAAAACAGTCGAAGCTCTAAAAACTGCTCTCGAAGGTTCGCCTCCGAATACACGAGATGAGCGCTGCAAGTCGGCAAATTGGATTGTGGTGCATAGGGCTCTTATGGCTATAAAGGACGTAGATGGGATGTTTTCTTCGTTGGATCCGGAGTATTATGATATCCTAATGAAGTATTTGTACAGAGGGTTGTCAACTGGTGATCGCCCCACATGTGATCAGTGTCTCAGGATACATGAAAAATTGACAGAAAAGGCTGGCTTAGGCTGCATTCTCCGTGCCCTTGCAGATACTATCAACACAGTTTGA

Protein sequence

MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRALADTINTV

Homology

[Close]

BLAST of Csor.00g119070 vs. ExPASy Swiss-Prot
Match: Q9M117 (Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=ARPC5A PE=1 SV=2)

HSP 1 Score: 232.3 bits (591), Expect = 3.3e-60
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 5   FVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FV ADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVHR
Sbjct: 4   FVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVHR 63

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           ALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTE+AGLGCILR
Sbjct: 64  ALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILR 123

Query: 125 ALADTINTV 134
            L DTINTV
Sbjct: 124 CLTDTINTV 132

[Close]

BLAST of Csor.00g119070 vs. ExPASy Swiss-Prot
Match: B3H6Y2 (Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=ARPC5B PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.2e-54
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 4   AFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVH 63
           AFV ADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSANWIVVH
Sbjct: 6   AFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSANWIVVH 65

Query: 64  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCIL 123
           RA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTE+AGLGCIL
Sbjct: 66  RAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAGLGCIL 125

Query: 124 RALADTINTV 134
           R L+DT NTV
Sbjct: 126 RCLSDTTNTV 135

[Close]

BLAST of Csor.00g119070 vs. ExPASy Swiss-Prot
Match: Q6DE18 (Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5-b PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.1e-10
Identity = 33/105 (31.43%), Postives = 60/105 (57.14%), Query Frame = 0


Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++SL++Q + + A ++AL  SP N++++  K     +V + L + K  +++   ++LDP
Sbjct: 42  EVDSLIRQGELLRAFQSALRNSPVNSKNQVAKERTQAIVLKVLTSFKSNEIEKAVNTLDP 101

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G       +    L+ HEK     GLG I+R L
Sbjct: 102 NGIDLLMKYIYKGFEKPTENSSAILLQWHEKAFVIGGLGSIVRVL 146

[Close]

BLAST of Csor.00g119070 vs. ExPASy Swiss-Prot
Match: O15511 (Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of Csor.00g119070 vs. ExPASy Swiss-Prot
Match: Q5R516 (Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=2 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 24  KIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHRALMAIK--DVDGMFSSLDP 83
           +++S L+Q     AL+ AL+  P NT+ +  K     +V + L++ K  D++    SLD 
Sbjct: 41  EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100

Query: 84  EYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILRAL 127
              D+LMKY+Y+G  +    +    L+ HEK     G+G I+R L
Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVL 145

[Close]

BLAST of Csor.00g119070 vs. NCBI nr
Match: XP_022922896.1 (actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata] >XP_022922905.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata] >KAG6602679.1 Actin-related protein 2/3 complex subunit 5A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033365.1 Actin-related protein 2/3 complex subunit 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267 bits (683), Expect = 3.32e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 133
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]

BLAST of Csor.00g119070 vs. NCBI nr
Match: XP_022989961.1 (actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita maxima] >XP_023544147.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita pepo subsp. pepo] >XP_023544156.1 actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264 bits (675), Expect = 5.51e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 133
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]

BLAST of Csor.00g119070 vs. NCBI nr
Match: XP_022922855.1 (actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922865.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922874.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922881.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP_022922889.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata])

HSP 1 Score: 261 bits (666), Expect = 1.44e-87
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 133
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]

BLAST of Csor.00g119070 vs. NCBI nr
Match: XP_022989957.1 (actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989958.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989959.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_022989960.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_023544102.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544112.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544120.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544130.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023544139.1 actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258 bits (658), Expect = 2.39e-86
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 133
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]

BLAST of Csor.00g119070 vs. NCBI nr
Match: XP_010089302.1 (actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin-related protein 2/3 complex subunit 5 [Morus notabilis])

HSP 1 Score: 256 bits (654), Expect = 9.41e-86
Identity = 126/132 (95.45%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 2   SDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIV 61
           +DAFV ADNAEAIITRIEHKSRKIESLLKQSK VEALKTALEGSPPNTRDERCKSANWIV
Sbjct: 4   TDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIV 63

Query: 62  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGC 121
           VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AGLGC
Sbjct: 64  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC 123

Query: 122 ILRALADTINTV 133
           ILR+LADT+NTV
Sbjct: 124 ILRSLADTVNTV 135

[Close]

BLAST of Csor.00g119070 vs. ExPASy TrEMBL
Match: A0A6J1E5D8 (Actin-related protein 2/3 complex subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111430708 PE=3 SV=1)

HSP 1 Score: 267 bits (683), Expect = 1.61e-90
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 133
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]

BLAST of Csor.00g119070 vs. ExPASy TrEMBL
Match: A0A6J1JLM3 (Actin-related protein 2/3 complex subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC111486990 PE=3 SV=1)

HSP 1 Score: 264 bits (675), Expect = 2.67e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120
           VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLG 120

Query: 121 CILRALADTINTV 133
           CILRALADTINTV
Sbjct: 121 CILRALADTINTV 133

[Close]

BLAST of Csor.00g119070 vs. ExPASy TrEMBL
Match: A0A6J1E4Q3 (Actin-related protein 2/3 complex subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC111430708 PE=3 SV=1)

HSP 1 Score: 261 bits (666), Expect = 6.97e-88
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 133
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]

BLAST of Csor.00g119070 vs. ExPASy TrEMBL
Match: A0A6J1JH92 (Actin-related protein 2/3 complex subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC111486990 PE=3 SV=1)

HSP 1 Score: 258 bits (658), Expect = 1.16e-86
Identity = 131/136 (96.32%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MSDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60
           MSDAFV ADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI
Sbjct: 1   MSDAFVEADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWI 60

Query: 61  VVHRALMAIKDVDGMFSSLDPEYYDILM---KYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120
           VVHRALMAIKDVDGMFSSLDPEYYDILM   +YLYRGLSTGDRPTCDQCLRIHEKLTEKA
Sbjct: 61  VVHRALMAIKDVDGMFSSLDPEYYDILMNTYRYLYRGLSTGDRPTCDQCLRIHEKLTEKA 120

Query: 121 GLGCILRALADTINTV 133
           GLGCILRALADTINTV
Sbjct: 121 GLGCILRALADTINTV 136

[Close]

BLAST of Csor.00g119070 vs. ExPASy TrEMBL
Match: W9R3V7 (Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484_021833 PE=3 SV=1)

HSP 1 Score: 256 bits (654), Expect = 4.56e-86
Identity = 126/132 (95.45%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 2   SDAFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIV 61
           +DAFV ADNAEAIITRIEHKSRKIESLLKQSK VEALKTALEGSPPNTRDERCKSANWIV
Sbjct: 4   TDAFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPNTRDERCKSANWIV 63

Query: 62  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGC 121
           VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AGLGC
Sbjct: 64  VHRALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAGLGC 123

Query: 122 ILRALADTINTV 133
           ILR+LADT+NTV
Sbjct: 124 ILRSLADTVNTV 135

[Close]

BLAST of Csor.00g119070 vs. TAIR 10
Match: AT4G01710.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-61
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 5   FVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVHR 64
           FV ADNAEAII RIE KSRKIESLLKQ K VEALKTALEGSPP TRDERCKSANWIVVHR
Sbjct: 4   FVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVHR 63

Query: 65  ALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 124
           ALMAIKD+DGM ++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTE+AGLGCILR
Sbjct: 64  ALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILR 123

Query: 125 ALADTINTV 134
            L DTINTV
Sbjct: 124 CLTDTINTV 132

[Close]

BLAST of Csor.00g119070 vs. TAIR 10
Match: AT5G65274.1 (ARP2/3 complex 16 kDa subunit (p16-Arc) )

HSP 1 Score: 213.8 bits (543), Expect = 8.6e-56
Identity = 104/130 (80.00%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 4   AFVGADNAEAIITRIEHKSRKIESLLKQSKTVEALKTALEGSPPNTRDERCKSANWIVVH 63
           AFV ADNAE I+ RIE KS+KIESLLK  K VEALKTAL+GSPP T DERCKSANWIVVH
Sbjct: 6   AFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSANWIVVH 65

Query: 64  RALMAIKDVDGMFSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCIL 123
           RA+MAIKD++GM +SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTE+AGLGCIL
Sbjct: 66  RAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAGLGCIL 125

Query: 124 RALADTINTV 134
           R L+DT NTV
Sbjct: 126 RCLSDTTNTV 135

The following BLAST results are available for this feature:

BLAST of Csor.00g119070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M117	3.3e-60	88.37	Actin-related protein 2/3 complex subunit 5A OS=Arabidopsis thaliana OX=3702 GN=...	[more]
B3H6Y2	1.2e-54	80.00	Actin-related protein 2/3 complex subunit 5B OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q6DE18	9.1e-10	31.43	Actin-related protein 2/3 complex subunit 5-B OS=Xenopus laevis OX=8355 GN=arpc5...	[more]
O15511	1.5e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens OX=9606 GN=ARPC5 PE=...	[more]
Q5R516	1.5e-09	32.38	Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii OX=9601 GN=ARPC5 PE=...	[more]

BLAST of Csor.00g119070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922896.1	3.32e-90	100.00	actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita moschata] >XP...	[more]
XP_022989961.1	5.51e-89	99.25	actin-related protein 2/3 complex subunit 5A isoform X2 [Cucurbita maxima] >XP_0...	[more]
XP_022922855.1	1.44e-87	97.06	actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita moschata] >XP...	[more]
XP_022989957.1	2.39e-86	96.32	actin-related protein 2/3 complex subunit 5A isoform X1 [Cucurbita maxima] >XP_0...	[more]
XP_010089302.1	9.41e-86	95.45	actin-related protein 2/3 complex subunit 5A [Morus notabilis] >EXB37627.1 Actin...	[more]

BLAST of Csor.00g119070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5D8	1.61e-90	100.00	Actin-related protein 2/3 complex subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JLM3	2.67e-89	99.25	Actin-related protein 2/3 complex subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1E4Q3	6.97e-88	97.06	Actin-related protein 2/3 complex subunit 5 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1JH92	1.16e-86	96.32	Actin-related protein 2/3 complex subunit 5 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
W9R3V7	4.56e-86	95.45	Actin-related protein 2/3 complex subunit 5 OS=Morus notabilis OX=981085 GN=L484...	[more]

BLAST of Csor.00g119070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01710.1	2.3e-61	88.37	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]
AT5G65274.1	8.6e-56	80.00	ARP2/3 complex 16 kDa subunit (p16-Arc)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006789	Actin-related protein 2/3 complex subunit 5	PFAM	PF04699	P16-Arc	coord: 13..129 e-value: 3.2E-23 score: 82.8
IPR006789	Actin-related protein 2/3 complex subunit 5	PANTHER	PTHR12644	ARP2/3 COMPLEX 16 KD SUBUNIT P16-ARC	coord: 3..131
IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	GENE3D	1.25.40.190		coord: 15..130 e-value: 1.5E-31 score: 111.0
IPR036743	Actin-related protein 2/3 complex subunit 5 superfamily	SUPERFAMILY	69103	Arp2/3 complex 16 kDa subunit ARPC5	coord: 7..129
None	No IPR available	PANTHER	PTHR12644:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 5	coord: 3..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g119070.m01	Csor.00g119070.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0015629	actin cytoskeleton
molecular_function	GO:0051015	actin filament binding