Csor.00g118430 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g118430
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	JHL25P11.1 protein
Location	Csor_Chr04: 21167883 .. 21168299 (+)
RNA-Seq Expression	Csor.00g118430
Synteny	Csor.00g118430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCCACCGCCGCTGCCGCCGCCTCTTTTTGGCTTCGTTCCAGTCGGAGCCGCTTTTTCATTCTCTTGCTTTGTTCCCCCCTCCTCGTTCCCATTTTCTGCGCTACTTTCCCCATCATCTGTGCCATAGAGCTCTGCATCCGCCTTGCTCGTCACAGGATAAGGATATGTCTTCGCGATTCCCCAGAAAGCGAACGGTTGCGGCGATGTGAGGAAGGCGGCTGCAGATCAGCGCTCCCGGAGAAGGTTGGCGATGACGGGGAGGAGGATATCGGCCTATTGCAGAGGTACTTGGATGATCAGCTACTGCTTGTTCGATCTGTTTATGAATGTGGAGATTGTGCCGACGACTTAAGTGGGGATGCTCGATTTTGTGACCTTGAAAATAGCAATTTGATTCCACTATTAGGCTGA

mRNA sequence

ATGTTAGCCACCGCCGCTGCCGCCGCCTCTTTTTGGCTTCGTTCCAGTCGGAGCCGCTTTTTCATTCTCTTGCTTTGTTCCCCCCTCCTCGTTCCCATTTTCTGCGCTACTTTCCCCATCATCTGTGCCATAGAGCTCTGCATCCGCCTTGCTCGTCACAGGATAAGGATATGTCTTCGCGATTCCCCAGAAAGCGAACGGTTGCGGCGATGTGAGGAAGGCGGCTGCAGATCAGCGCTCCCGGAGAAGGTTGGCGATGACGGGGAGGAGGATATCGGCCTATTGCAGAGGTACTTGGATGATCAGCTACTGCTTGTTCGATCTGTTTATGAATGTGGAGATTGTGCCGACGACTTAAGTGGGGATGCTCGATTTTGTGACCTTGAAAATAGCAATTTGATTCCACTATTAGGCTGA

Coding sequence (CDS)

ATGTTAGCCACCGCCGCTGCCGCCGCCTCTTTTTGGCTTCGTTCCAGTCGGAGCCGCTTTTTCATTCTCTTGCTTTGTTCCCCCCTCCTCGTTCCCATTTTCTGCGCTACTTTCCCCATCATCTGTGCCATAGAGCTCTGCATCCGCCTTGCTCGTCACAGGATAAGGATATGTCTTCGCGATTCCCCAGAAAGCGAACGGTTGCGGCGATGTGAGGAAGGCGGCTGCAGATCAGCGCTCCCGGAGAAGGTTGGCGATGACGGGGAGGAGGATATCGGCCTATTGCAGAGGTACTTGGATGATCAGCTACTGCTTGTTCGATCTGTTTATGAATGTGGAGATTGTGCCGACGACTTAAGTGGGGATGCTCGATTTTGTGACCTTGAAAATAGCAATTTGATTCCACTATTAGGCTGA

Protein sequence

MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLRDSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLSGDARFCDLENSNLIPLLG

Homology

[Close]

BLAST of Csor.00g118430 vs. NCBI nr
Match: KAG6602743.1 (hypothetical protein SDJN03_07976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271 bits (694), Expect = 1.01e-91
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR
Sbjct: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60

Query: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120
           DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS
Sbjct: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120

Query: 121 GDARFCDLENSNLIPLLG 138
           GDARFCDLENSNLIPLLG
Sbjct: 121 GDARFCDLENSNLIPLLG 138

[Close]

BLAST of Csor.00g118430 vs. NCBI nr
Match: XP_022962190.1 (uncharacterized protein LOC111462719 [Cucurbita moschata] >KAG7033430.1 hypothetical protein SDJN02_07486, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271 bits (692), Expect = 3.65e-91
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR
Sbjct: 18  MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 77

Query: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120
           DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS
Sbjct: 78  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 137

Query: 121 GDARFCDLENSNLIPLLG 138
           GDARFCD+ENSNLIPLLG
Sbjct: 138 GDARFCDIENSNLIPLLG 155

[Close]

BLAST of Csor.00g118430 vs. NCBI nr
Match: XP_023550754.1 (uncharacterized protein LOC111808798 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 271 bits (692), Expect = 3.65e-91
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR
Sbjct: 18  MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 77

Query: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120
           DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS
Sbjct: 78  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 137

Query: 121 GDARFCDLENSNLIPLLG 138
           GDARFCD+ENSNLIPLLG
Sbjct: 138 GDARFCDIENSNLIPLLG 155

[Close]

BLAST of Csor.00g118430 vs. NCBI nr
Match: XP_022990172.1 (uncharacterized protein LOC111487144 [Cucurbita maxima])

HSP 1 Score: 264 bits (674), Expect = 2.03e-88
Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLATAAAAASFWLR SRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR
Sbjct: 18  MLATAAAAASFWLRPSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 77

Query: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120
           DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLL RYLDDQLLLVRSVY CGDCADDLS
Sbjct: 78  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLPRYLDDQLLLVRSVYVCGDCADDLS 137

Query: 121 GDARFCDLENSNLIPLLG 138
           GDARFCD+ENSNLIPLLG
Sbjct: 138 GDARFCDIENSNLIPLLG 155

[Close]

BLAST of Csor.00g118430 vs. NCBI nr
Match: XP_022152501.1 (uncharacterized protein LOC111020213 [Momordica charantia])

HSP 1 Score: 212 bits (539), Expect = 6.66e-68
Identity = 112/138 (81.16%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLATAAAAAS WL SSR+RF  +LLCSPLLVPIFCATFP ICAIELCIRLARHR  I LR
Sbjct: 18  MLATAAAAASSWLCSSRTRFVFVLLCSPLLVPIFCATFPFICAIELCIRLARHRRSISLR 77

Query: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120
           DSPE ERLRRCEEGGC +ALPE    DGEE+IGLLQRYLDDQLLLVRSVYECGD  +D++
Sbjct: 78  DSPEIERLRRCEEGGCAAALPE----DGEEEIGLLQRYLDDQLLLVRSVYECGDGDNDIN 137

Query: 121 GDARFCDLENSNLIPLLG 138
           GDARFCD +NSN+IPLLG
Sbjct: 138 GDARFCDFKNSNVIPLLG 151

[Close]

BLAST of Csor.00g118430 vs. ExPASy TrEMBL
Match: A0A6J1HEC7 (uncharacterized protein LOC111462719 OS=Cucurbita moschata OX=3662 GN=LOC111462719 PE=4 SV=1)

HSP 1 Score: 271 bits (692), Expect = 1.77e-91
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR
Sbjct: 18  MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 77

Query: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120
           DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS
Sbjct: 78  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 137

Query: 121 GDARFCDLENSNLIPLLG 138
           GDARFCD+ENSNLIPLLG
Sbjct: 138 GDARFCDIENSNLIPLLG 155

[Close]

BLAST of Csor.00g118430 vs. ExPASy TrEMBL
Match: A0A6J1JHX7 (uncharacterized protein LOC111487144 OS=Cucurbita maxima OX=3661 GN=LOC111487144 PE=4 SV=1)

HSP 1 Score: 264 bits (674), Expect = 9.80e-89
Identity = 134/138 (97.10%), Postives = 135/138 (97.83%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLATAAAAASFWLR SRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR
Sbjct: 18  MLATAAAAASFWLRPSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 77

Query: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120
           DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLL RYLDDQLLLVRSVY CGDCADDLS
Sbjct: 78  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLPRYLDDQLLLVRSVYVCGDCADDLS 137

Query: 121 GDARFCDLENSNLIPLLG 138
           GDARFCD+ENSNLIPLLG
Sbjct: 138 GDARFCDIENSNLIPLLG 155

[Close]

BLAST of Csor.00g118430 vs. ExPASy TrEMBL
Match: A0A6J1DHX6 (uncharacterized protein LOC111020213 OS=Momordica charantia OX=3673 GN=LOC111020213 PE=4 SV=1)

HSP 1 Score: 212 bits (539), Expect = 3.23e-68
Identity = 112/138 (81.16%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLATAAAAAS WL SSR+RF  +LLCSPLLVPIFCATFP ICAIELCIRLARHR  I LR
Sbjct: 18  MLATAAAAASSWLCSSRTRFVFVLLCSPLLVPIFCATFPFICAIELCIRLARHRRSISLR 77

Query: 61  DSPESERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLS 120
           DSPE ERLRRCEEGGC +ALPE    DGEE+IGLLQRYLDDQLLLVRSVYECGD  +D++
Sbjct: 78  DSPEIERLRRCEEGGCAAALPE----DGEEEIGLLQRYLDDQLLLVRSVYECGDGDNDIN 137

Query: 121 GDARFCDLENSNLIPLLG 138
           GDARFCD +NSN+IPLLG
Sbjct: 138 GDARFCDFKNSNVIPLLG 151

[Close]

BLAST of Csor.00g118430 vs. ExPASy TrEMBL
Match: A0A540M3W3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_020956 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 4.60e-35
Identity = 74/140 (52.86%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIRICLR 60
           MLA A+++++ WLR+ R R+ +LLLCSP+L+P  CA FP++CA ELC+RL R RI+    
Sbjct: 1   MLAAASSSSTTWLRAHRIRYLVLLLCSPILIPFLCAIFPLLCAAELCLRLCRRRIKTSHD 60

Query: 61  DS-PESERLRRCEEG-GCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDC-AD 120
           ++  E ER+RRCEEG G  SA      +DG+E++GLLQRYL+DQLLLV SVY+CGD  +D
Sbjct: 61  ETGEEEERMRRCEEGRGSGSAAAAAGKEDGKEEMGLLQRYLEDQLLLVGSVYDCGDDDSD 120

Query: 121 DLSGDARFCDLENSNLIPLL 137
           DL  +    D  +SN  PLL
Sbjct: 121 DLYHEIHDYD-NDSNTTPLL 139

[Close]

BLAST of Csor.00g118430 vs. ExPASy TrEMBL
Match: A0A6P4AVV5 (uncharacterized protein LOC107434530 OS=Ziziphus jujuba OX=326968 GN=LOC107434530 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.10e-33
Identity = 75/126 (59.52%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 1   MLATAAAAASF--WLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARH-RIRI 60
           MLA AAAA+S   WLR+ RSR+  L LC P+L+P  CATFP++CA ELC+RL R  R+R 
Sbjct: 1   MLAAAAAASSSSNWLRAGRSRYLCLCLCFPILLPFLCATFPLLCAAELCVRLCRRQRLRK 60

Query: 61  CLRDSPES-ERLRRCEEGGCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCA 120
             RDS E  ERLRRCEEG C +AL E      EE++GLLQRYL+DQL+LV SVY+CGD  
Sbjct: 61  IARDSKEDDERLRRCEEGRCGAALEE------EEEVGLLQRYLEDQLMLVGSVYDCGD-- 118

Query: 121 DDLSGD 122
           DD+  D
Sbjct: 121 DDVDED 118

[Close]

BLAST of Csor.00g118430 vs. TAIR 10
Match: AT1G35430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09170.1); Has 23 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 5.8e-23
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 0


Query: 11  FWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRL-ARHRIRICLRDSPESERLR 70
           FWLR+ RSRF   LLCSPLL+PI CA+ PI+CA+E+  RL +RH          +  RLR
Sbjct: 6   FWLRTRRSRFVFFLLCSPLLIPILCASIPILCAVEIFSRLRSRHPWFAKSTAEEDDLRLR 65

Query: 71  RCEEG-GCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYECGDCADDLSGDA 124
           RCEEG GC        G D  E+ GLLQRYL+DQL+LVRSVY+CG+   D   D+
Sbjct: 66  RCEEGCGCG-------GFDEPEEAGLLQRYLEDQLVLVRSVYDCGEEDQDQDQDS 113

[Close]

BLAST of Csor.00g118430 vs. TAIR 10
Match: AT4G09170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35430.1); Has 23 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-09
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 1   MLATAAAAASFWLRSSRSRFFILLLCSPLLVPIFCATFPIICAIELCIRLARHRIR---- 60
           ML  A+  ++ W     SR   L+LCSPLL    C + P++CA+E+  RL    ++    
Sbjct: 14  MLTCASCFSTRW-----SRIIFLILCSPLL----CLSIPLLCAVEIFSRLLSRIVKPPPS 73

Query: 61  ----ICLRDSPESERLRRCEEG-GCRSALPEKVGDDGEEDIGLLQRYLDDQLLLVRSVYE 112
                 L D  ++ RLR+CEEG G +        +D  E+ GLL RYLD+QL L R++++
Sbjct: 74  SAVSKVLVDDEDNLRLRQCEEGFGMKE-------EDENEESGLLHRYLDNQLSLARTIFD 117

The following BLAST results are available for this feature:

BLAST of Csor.00g118430 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g118430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602743.1	1.01e-91	100.00	hypothetical protein SDJN03_07976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022962190.1	3.65e-91	99.28	uncharacterized protein LOC111462719 [Cucurbita moschata] >KAG7033430.1 hypothet...	[more]
XP_023550754.1	3.65e-91	99.28	uncharacterized protein LOC111808798 [Cucurbita pepo subsp. pepo]	[more]
XP_022990172.1	2.03e-88	97.10	uncharacterized protein LOC111487144 [Cucurbita maxima]	[more]
XP_022152501.1	6.66e-68	81.16	uncharacterized protein LOC111020213 [Momordica charantia]	[more]

BLAST of Csor.00g118430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEC7	1.77e-91	99.28	uncharacterized protein LOC111462719 OS=Cucurbita moschata OX=3662 GN=LOC1114627...	[more]
A0A6J1JHX7	9.80e-89	97.10	uncharacterized protein LOC111487144 OS=Cucurbita maxima OX=3661 GN=LOC111487144...	[more]
A0A6J1DHX6	3.23e-68	81.16	uncharacterized protein LOC111020213 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A540M3W3	4.60e-35	52.86	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_020956 PE=4 SV=1	[more]
A0A6P4AVV5	1.10e-33	59.52	uncharacterized protein LOC107434530 OS=Ziziphus jujuba OX=326968 GN=LOC10743453...	[more]

BLAST of Csor.00g118430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G35430.1	5.8e-23	53.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G09170.1	4.8e-09	35.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36322	TRANSMEMBRANE PROTEIN	coord: 3..135
None	No IPR available	PANTHER	PTHR36322:SF3	TRANSMEMBRANE PROTEIN	coord: 3..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g118430.m01	Csor.00g118430.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane