Csor.00g115870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g115870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA-binding protein
Location	Csor_Chr07: 751786 .. 753354 (-)
RNA-Seq Expression	Csor.00g115870
Synteny	Csor.00g115870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAACTCATGGCCCAGCGTGGCATGGTAAGCTGTAGTCTCTTTGTTTATATGCGTGGGAACATTTTACTTGATCGTGGACATCTCTACTGACTTCTAATGATAATTAGGGAAGCCAAAGTAATCCAGAGCAACAGAAGGCCCAGGAAGAGGCTAAGAGGTTCTTGATTTTATTATATTATTTTGTAGTTGTTTTTTAGTCATCACTTTTAATATCCAAGTCCTGCTTTAGCATATGACAACAATTTCTTTCACATTCAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGCCAGATTCTGTCAATGCAAGCGAGGGAAAGACGTAAGTTTAACCTTAGCATGCATTGTAGATAGTATCTTTACCCTTAAAAAAACTGTACTTCTTTTCCTCATCCACGATCCATCAACCCCAAATTGATTCCCCACCCTGAAAGAAAGAAGGAAAAATTTTCTTATTTGGATTTAAATGTCGTTAATTCAGTTTAAGGATGATTCTGGTTGCATACTTTCAATTTTGAGGCTGAACTGACTCGGACATTCTTCATTATGGGACCAACTTCTTGATTAGAGTTTATATGATGGTTGTAGATAACATTTTCTTTTTTCTCCGTGGTTCCTGAATATTCTCTTTTACATGGATATCTTCTAGTAAGATCATTTGTGATGCATGCTACGATTTTTGGACCCATGGTTGCAAAAAAAAAAAAAAAAAAGAGTTTCAAATGGTTTTCATGCTTCATTGAATGAAATGGATACTTTTTGCTTATTTTGATTCACAATTCTTATGCATTTTATTATTTCTCAATGTAAGTTGAATTCCTTGATTGTAAATGTTAGATTTGGGGTTTTGGCATTGATGATACCTTTGGCAACAGTCATACAGCATTATTATCAAATAAGATTGCTAAACCAAGAGTATAAAGATTTGGGTGGAGTATGGATCTTTTTTGTTGATTGTTGATGTTACTAGATCTACTTTTACTCCAGCCTTATTTTCGGGCAATTAGATGGCATTCCTGTCAAACTGTGCTTTGCTATTAGCTGGCATGGAGGTCGTACGGGCAAATTATGCCTAGTTAGTCATTATTGCATTTTGGTTACTGGCTATTTTACCGTATTCATGTTCATTTTTCCCTGTGCTTTTATGCAGTTGCTCGAATTGCGTTGGTTAAACCTGAGAAGGCTAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAGATTGTAGAGAAGGTGTGTGCAGTAGCATATCGTTCCAGTTTCTTTGTCAAAATTGATGCACCTATATTTACTTCGGAATATGACAAACTCCAGTATGAATGAAACATCGGATTTTACCATCTCTTTTCAGGTGTCTGAAGAAAAGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTGTGAGTTTTCATTGCTTACATTATGGGTGCCTGCTGAATTTTTATATGTTCTTGGCCTGACACTTTTTGTATAATGCTCATAATTCTTCAGATACAAAGGCGTCGAAGTGTCCTTGAGGACGACGATTAG

mRNA sequence

ATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCAGAGCAACAGAAGGCCCAGGAAGAGGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGCCAGATTCTGTCAATGCAAGCGAGGGAAAGACTTGCTCGAATTGCGTTGGTTAAACCTGAGAAGGCTAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAGATTGTAGAGAAGGTGTCTGAAGAAAAGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGTGTCCTTGAGGACGACGATTAG

Coding sequence (CDS)

ATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCAGAGCAACAGAAGGCCCAGGAAGAGGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGCCAGATTCTGTCAATGCAAGCGAGGGAAAGACTTGCTCGAATTGCGTTGGTTAAACCTGAGAAGGCTAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAGATTGTAGAGAAGGTGTCTGAAGAAAAGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGTGTCCTTGAGGACGACGATTAG

Protein sequence

MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

Homology

[Close]

BLAST of Csor.00g115870 vs. ExPASy Swiss-Prot
Match: Q54YS0 (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 92.8 bits (229), Expect = 2.7e-18
Identity = 60/114 (52.63%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 2   QELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKAR 61
           Q+L   +G G   +PE Q+ QE  + EA ERRQ +L QIL+  ARERL+RI +VKPEK+R
Sbjct: 9   QQLSQMQGQG--FDPEAQQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSR 68

Query: 62  GVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
            +ED+I+RAAQ GQ+ E+V + KLI+LLEQ+ ++ TK+T +T++RR   +EDDD
Sbjct: 69  QIEDLIIRAAQTGQLTERVDDAKLISLLEQL-SEKTKKTTITMKRR--TIEDDD 117

[Close]

BLAST of Csor.00g115870 vs. ExPASy Swiss-Prot
Match: O14737 (Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 21  AQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 80
           AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 28  AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 87

Query: 81  SEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           SE+ LI +L++++ QT K T V   RR+ +  D+D
Sbjct: 88  SEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122

[Close]

BLAST of Csor.00g115870 vs. ExPASy Swiss-Prot
Match: P56812 (Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 21  AQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 80
           AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KV
Sbjct: 28  AQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKV 87

Query: 81  SEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           SE+ LI +LE+++ QT K+T V   RR+ +  D+D
Sbjct: 88  SEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122

[Close]

BLAST of Csor.00g115870 vs. ExPASy Swiss-Prot
Match: Q5RBT0 (Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-12
Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 21  AQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 80
           AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKV
Sbjct: 28  AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKV 87

Query: 81  SEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           SE+ LI +L++++ QT K T V   RR+ +  D+D
Sbjct: 88  SEQGLIEILKKVSQQTEKTTTVKFNRRKVMDSDED 122

[Close]

BLAST of Csor.00g115870 vs. ExPASy Swiss-Prot
Match: Q2HJH9 (Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 43/95 (45.26%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 21  AQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKV 80
           AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KV
Sbjct: 28  AQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSGKV 87

Query: 81  SEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           SE+ LI +LE+++ QT K+T V   RR+ +  D+D
Sbjct: 88  SEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDED 122

[Close]

BLAST of Csor.00g115870 vs. NCBI nr
Match: KAG6594495.1 (DNA-binding protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (507), Expect = 6.12e-64
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115

[Close]

BLAST of Csor.00g115870 vs. NCBI nr
Match: XP_022926831.1 (DNA-binding protein DDB_G0278111-like [Cucurbita moschata] >XP_023003579.1 DNA-binding protein DDB_G0278111-like [Cucurbita maxima] >KAG7026483.1 Programmed cell death protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (507), Expect = 9.32e-64
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 128

[Close]

BLAST of Csor.00g115870 vs. NCBI nr
Match: XP_023518943.1 (DNA-binding protein DDB_G0278111-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199 bits (506), Expect = 1.32e-63
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRS+LEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSILEDDD 128

[Close]

BLAST of Csor.00g115870 vs. NCBI nr
Match: XP_038881892.1 (DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding protein DDB_G0278111 [Benincasa hispida])

HSP 1 Score: 196 bits (498), Expect = 2.19e-62
Identity = 112/115 (97.39%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLARIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 128

[Close]

BLAST of Csor.00g115870 vs. NCBI nr
Match: KAA0052566.1 (DNA-binding protein [Cucumis melo var. makuwa] >TYK13259.1 DNA-binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (495), Expect = 4.14e-62
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 60

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115

[Close]

BLAST of Csor.00g115870 vs. ExPASy TrEMBL
Match: A0A6J1KTQ8 (DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC111497139 PE=3 SV=1)

HSP 1 Score: 199 bits (507), Expect = 4.51e-64
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 128

[Close]

BLAST of Csor.00g115870 vs. ExPASy TrEMBL
Match: A0A6J1EFZ2 (DNA-binding protein DDB_G0278111-like OS=Cucurbita moschata OX=3662 GN=LOC111433829 PE=3 SV=1)

HSP 1 Score: 199 bits (507), Expect = 4.51e-64
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 128

[Close]

BLAST of Csor.00g115870 vs. ExPASy TrEMBL
Match: A0A5D3CSS6 (DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008770 PE=3 SV=1)

HSP 1 Score: 195 bits (495), Expect = 2.00e-62
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 1   MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 60

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 61  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115

[Close]

BLAST of Csor.00g115870 vs. ExPASy TrEMBL
Match: A0A1S3AZB0 (DNA-binding protein DDB_G0278111 OS=Cucumis melo OX=3656 GN=LOC103484392 PE=3 SV=1)

HSP 1 Score: 195 bits (495), Expect = 3.04e-62
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 14  MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 73

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 74  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 128

[Close]

BLAST of Csor.00g115870 vs. ExPASy TrEMBL
Match: A0A0A0KKK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522140 PE=3 SV=1)

HSP 1 Score: 195 bits (495), Expect = 3.36e-62
Identity = 111/115 (96.52%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKA 60
           MQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARERL+RIALVKPEKA
Sbjct: 17  MQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKA 76

Query: 61  RGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 115
           RGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRRRSVLEDDD
Sbjct: 77  RGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 131

[Close]

BLAST of Csor.00g115870 vs. TAIR 10
Match: AT1G29850.1 (double-stranded DNA-binding family protein )

HSP 1 Score: 160.6 bits (405), Expect = 7.4e-40
Identity = 97/118 (82.20%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MQELMAQRGM---GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKP 60
           MQELMA++GM   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVKP
Sbjct: 14  MQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKP 73

Query: 61  EKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           EKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQIN+QTTKQTKVT QRRR V  DDD
Sbjct: 74  EKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRRGV--DDD 129

[Close]

BLAST of Csor.00g115870 vs. TAIR 10
Match: AT1G29850.2 (double-stranded DNA-binding family protein )

HSP 1 Score: 160.2 bits (404), Expect = 9.7e-40
Identity = 97/119 (81.51%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MQELMAQRGM----GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVK 60
           MQELMA++GM    G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVK
Sbjct: 14  MQELMARQGMQGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVK 73

Query: 61  PEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 116
           PEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQIN+QTTKQTKVT QRRR V  DDD
Sbjct: 74  PEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTYQRRRGV--DDD 130

[Close]

BLAST of Csor.00g115870 vs. TAIR 10
Match: AT1G29850.3 (double-stranded DNA-binding family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-37
Identity = 90/113 (79.65%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MQELMAQRGM---GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKP 60
           MQELMA++GM   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVKP
Sbjct: 14  MQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQARERIARIALVKP 73

Query: 61  EKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSV 111
           EKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQIN+QTTKQTKVT+    +V
Sbjct: 74  EKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTVSTNGAV 126

The following BLAST results are available for this feature:

BLAST of Csor.00g115870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54YS0	2.7e-18	52.63	DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G02...	[more]
O14737	1.3e-12	45.26	Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3	[more]
P56812	1.3e-12	45.26	Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3	[more]
Q5RBT0	1.3e-12	45.26	Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3	[more]
Q2HJH9	1.7e-12	45.26	Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3	[more]

BLAST of Csor.00g115870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594495.1	6.12e-64	100.00	DNA-binding protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022926831.1	9.32e-64	100.00	DNA-binding protein DDB_G0278111-like [Cucurbita moschata] >XP_023003579.1 DNA-b...	[more]
XP_023518943.1	1.32e-63	99.13	DNA-binding protein DDB_G0278111-like [Cucurbita pepo subsp. pepo]	[more]
XP_038881892.1	2.19e-62	97.39	DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding...	[more]
KAA0052566.1	4.14e-62	96.52	DNA-binding protein [Cucumis melo var. makuwa] >TYK13259.1 DNA-binding protein [...	[more]

BLAST of Csor.00g115870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTQ8	4.51e-64	100.00	DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC11149713...	[more]
A0A6J1EFZ2	4.51e-64	100.00	DNA-binding protein DDB_G0278111-like OS=Cucurbita moschata OX=3662 GN=LOC111433...	[more]
A0A5D3CSS6	2.00e-62	96.52	DNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G...	[more]
A0A1S3AZB0	3.04e-62	96.52	DNA-binding protein DDB_G0278111 OS=Cucumis melo OX=3656 GN=LOC103484392 PE=3 SV...	[more]
A0A0A0KKK2	3.36e-62	96.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522140 PE=3 SV=1	[more]

BLAST of Csor.00g115870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29850.1	7.4e-40	82.20	double-stranded DNA-binding family protein	[more]
AT1G29850.2	9.7e-40	81.51	double-stranded DNA-binding family protein	[more]
AT1G29850.3	2.0e-37	79.65	double-stranded DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002836	PDCD5-like	PIRSF	PIRSF015730	TFAR19	coord: 1..115 e-value: 9.8E-33 score: 110.9
IPR002836	PDCD5-like	PFAM	PF01984	dsDNA_bind	coord: 1..107 e-value: 3.0E-29 score: 101.5
IPR002836	PDCD5-like	PANTHER	PTHR10840	PROGRAMMED CELL DEATH PROTEIN 5	coord: 1..113
IPR036883	PDCD5-like superfamily	GENE3D	1.10.8.140		coord: 1..97 e-value: 4.4E-28 score: 99.4
IPR036883	PDCD5-like superfamily	SUPERFAMILY	46950	Double-stranded DNA-binding domain	coord: 12..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR10840:SF3	BNAA07G07610D PROTEIN	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g115870.m01	Csor.00g115870.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding