Csor.00g114940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g114940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	Csor_Chr07: 1102841 .. 1104923 (+)
RNA-Seq Expression	Csor.00g114940
Synteny	Csor.00g114940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCGCCGCTGCCATGGCTGCTAGGTCAGCCCTCGGATCTATCGTAGCCCGAACCACCATCTCCGGCAGACTTACCAGCGGTGCCAAATTGAAATCACTACGATCTCCGTTTGGCATCCCCAAGGGCAAGCAGAGCCCACTCTCCCAATCCCATTGCATTTCGAGGTAAAGTTTCGATGGAACTTCTCTGCTATTTCGATTTTGTAATGCGTCTGATGAATTTGTGTTGCGAAGGTTTCCTGTTGAGGTGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGTTTACGTCTTTGCTTTGCACCTCTTGTAGGAGCTACGGTTGGACCCCTGAAGGTATTTCCTAGATATTATAGCCTAAACTTTCTATTAAATACCTGATTGCTTTTTCTTATTTTTATTTTTTATTTTATTTTATTGATCGAGTGTTCCTTCTTGTGCTACTTGGCTTTAGCTCTGTGTGTTGGTGATTCTACGTCCCGTTAGTGGATAATAAGTTAGTTGGTTCTTATGGTTCTCTGTGTGTTGGGGTTATATTTAGGTGCATTAAAAAGTGCGGTTGCGTTTTTGGTGTTCATTGAAATTTTGAAAGAACATTTTTGTTCGTCCGGCTGTGAATTTATTGTTCACATTTTCATCGGCCCATCTTTTACTCGCTTGTTATTTGTTATATATTAAGCTTTTCTTCTTTGGTATTACCGTCTAGTCATTGTCTGGATTTTTAACCAACATAGTTTAAAGGGCTCAATCTTGATTGTTTATTCAGGATGTTGAATTAATATTATACCATAATAATGAGAATAGCTTTGTAGGTCAAGTTAGCTCTGAATTTATTTTTCTTTGCTCATTGATGGCATTAATTTTAGTAACATGACGAGATGCTATTGATTTCTTCTACCACTCAGACTGCATTGATGATGTATGATGAATGTCGATGGTTCAAGCACTTGCCCTCTAAAGACAATATGCTGAAATAAAGTCATGTATTGCTTGTTTTTCATGCCCAAGTAGTTCAGTGACGTTGAGTTTTTATAGAAGTAGGAAGAAACAAGCTCATAACTGGGTTTGTGTAGGTTGATATTCATGTTGGTGAGGCAAAATTTTGTTATAATTCTCACTACCGATGACAGTTACCATCCTTGAGTTGTCCCTACTGAATGTTCTTTCTCTTGAAGTTTTGGGGACTTTACATGAGTTCATATCCATTCATTATTACTTTCTATAAAATGGTGTTATTACATCATAGTCACCCCTGAAAAGTGAAACTGCTACATTTGTGTTTATGTTGTAGATTCTTGAATGATGAATGCTGCTATTGAGCAGGACTTACCTAAGGTAATCAATTCTAGGTTAGCATCCAAGTCTTCCTCCTATAACTAAAAGAATCATTATAAAGTATGGTACAAACGTTCACAACATTGAAATTTTAATGTGGCATGCACAAATGGATCCAATAGATTACAGAGTGCAGTTGAAATGAGTCATAGTGCTAGGAGAATTCAAAGGGGAATAGGTTTTGGGTTTGTAAAACATATAGATGGTCCTAAGCTGGTAACTTCTTGAAACATAATTTCATGTAGCTAGTTTACAGGTATCTTGAACTATATCAAAGAATGGGTTTACATTTTTAGAAATGAATTTATTGGGCCTTTAGCTGTTCCTATGACCGATACCTTGTGGCCATTACTTTTCATGATGGTCTTTATATTCATTGAAATATGCTGCCAGCCTCCCTTTAGTTCCATCCCCATCTTCAATCTCATTGTCTAAAGTAGGTTTCATACAATTTCAACAATGTAACCTTGCATCCATCGTCGATCTTTTCCCCCTTGTATATCTAATTCAACATGTTTCTTTCTCTAGGATCGTGAGAGATTGCTCATTGCTGAACTTAGCGACTTACTCATTTCCAAGCAGGAGGATAACTATGTACATGTTTGTTCATCATGATGTTTTAGGTATAAAAATTGAAGTTTAGAATAGTTGGCTGTGCAGTTTCTTAGACAATGTTTATAATCTATCTACATTTCCCCTTTTTGCTGTAATGTAGGTGGATGA

mRNA sequence

ATGTCCTCCGCCGCTGCCATGGCTGCTAGGTCAGCCCTCGGATCTATCGTAGCCCGAACCACCATCTCCGGCAGACTTACCAGCGGTGCCAAATTGAAATCACTACGATCTCCGTTTGGCATCCCCAAGGGCAAGCAGAGCCCACTCTCCCAATCCCATTGCATTTCGAGGTTTCCTGTTGAGGTGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGTTTACGTCTTTGCTTTGCACCTCTTGTAGGAGCTACGGTTGGACCCCTGAAGACTGCATTGATGATGACTTACCTAAGGTAATCAATTCTAGGATCGTGAGAGATTGCTCATTGCTGAACTTAGCGACTTACTCATTTCCAAGCAGGAGGATAACTATGTACATGTTTGTTCATCATGATGTTTTAGGTGGATGA

Coding sequence (CDS)

ATGTCCTCCGCCGCTGCCATGGCTGCTAGGTCAGCCCTCGGATCTATCGTAGCCCGAACCACCATCTCCGGCAGACTTACCAGCGGTGCCAAATTGAAATCACTACGATCTCCGTTTGGCATCCCCAAGGGCAAGCAGAGCCCACTCTCCCAATCCCATTGCATTTCGAGGTTTCCTGTTGAGGTGAGTTGCTGTGTGGAATCGTTGCTTCCTTACCACTCTGCTACTGCCTCTGCATTGTTTACGTCTTTGCTTTGCACCTCTTGTAGGAGCTACGGTTGGACCCCTGAAGACTGCATTGATGATGACTTACCTAAGGTAATCAATTCTAGGATCGTGAGAGATTGCTCATTGCTGAACTTAGCGACTTACTCATTTCCAAGCAGGAGGATAACTATGTACATGTTTGTTCATCATGATGTTTTAGGTGGATGA

Protein sequence

MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPVEVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDDDLPKVINSRIVRDCSLLNLATYSFPSRRITMYMFVHHDVLGG

Homology

[Close]

BLAST of Csor.00g114940 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.9e-09
Identity = 47/103 (45.63%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 2   SSAAAMAARSALGSIVARTTI--SGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFP 61
           +SA    ARS L +  +R+    +GR  S AK      P      ++SPL       R P
Sbjct: 3   TSAVLSGARSMLRAASSRSAAASTGRFASQAK---SAPPLFRATARRSPLLSP---LRNP 62

Query: 62  VEVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDD 103
           VE+S CVESLLPYHSATASAL TS L  S ++YGW  + C DD
Sbjct: 63  VELSFCVESLLPYHSATASALMTSKLSISGQTYGWLSDACNDD 99

[Close]

BLAST of Csor.00g114940 vs. NCBI nr
Match: KAG6594588.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286 bits (732), Expect = 2.54e-97
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
           MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV
Sbjct: 1   MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60

Query: 61  EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDDDLPKVINSRIVRDCSLLN 120
           EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDDDLPKVINSRIVRDCSLLN
Sbjct: 61  EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDDDLPKVINSRIVRDCSLLN 120

Query: 121 LATYSFPSRRITMYMFVHHDVLGG 144
           LATYSFPSRRITMYMFVHHDVLGG
Sbjct: 121 LATYSFPSRRITMYMFVHHDVLGG 144

[Close]

BLAST of Csor.00g114940 vs. NCBI nr
Match: XP_023003343.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 196 bits (498), Expect = 3.15e-62
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
           MSSAAAM ARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV
Sbjct: 1   MSSAAAMVARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60

Query: 61  EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDD 102
           EVSCCVESLLPYHSATASALFTS+LC SCRSYGWTPEDCIDD
Sbjct: 61  EVSCCVESLLPYHSATASALFTSMLCISCRSYGWTPEDCIDD 102

[Close]

BLAST of Csor.00g114940 vs. NCBI nr
Match: XP_023518414.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193 bits (490), Expect = 5.22e-61
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
           MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSH ISRFPV
Sbjct: 1   MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHRISRFPV 60

Query: 61  EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDD 102
           EVSCCVESLLPYHSATASALFTS+LC SCRSYGWTPEDCIDD
Sbjct: 61  EVSCCVESLLPYHSATASALFTSMLCISCRSYGWTPEDCIDD 102

[Close]

BLAST of Csor.00g114940 vs. NCBI nr
Match: KAG7026558.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189 bits (480), Expect = 1.54e-59
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
          MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPK KQSPLSQSHCISRFPV
Sbjct: 1  MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKSKQSPLSQSHCISRFPV 60

Query: 61 EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPED 98
          EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPED
Sbjct: 61 EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPED 98

[Close]

BLAST of Csor.00g114940 vs. NCBI nr
Match: XP_023003345.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 187 bits (474), Expect = 1.26e-58
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
          MSSAAAM ARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV
Sbjct: 1  MSSAAAMVARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60

Query: 61 EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPED 98
          EVSCCVESLLPYHSATASALFTS+LC SCRSYGWTPED
Sbjct: 61 EVSCCVESLLPYHSATASALFTSMLCISCRSYGWTPED 98

[Close]

BLAST of Csor.00g114940 vs. ExPASy TrEMBL
Match: A0A6J1KW85 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496977 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 1.52e-62
Identity = 99/102 (97.06%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 1   MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
           MSSAAAM ARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV
Sbjct: 1   MSSAAAMVARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60

Query: 61  EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDD 102
           EVSCCVESLLPYHSATASALFTS+LC SCRSYGWTPEDCIDD
Sbjct: 61  EVSCCVESLLPYHSATASALFTSMLCISCRSYGWTPEDCIDD 102

[Close]

BLAST of Csor.00g114940 vs. ExPASy TrEMBL
Match: A0A6J1KRI2 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111496977 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 6.11e-59
Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
          MSSAAAM ARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV
Sbjct: 1  MSSAAAMVARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60

Query: 61 EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPED 98
          EVSCCVESLLPYHSATASALFTS+LC SCRSYGWTPED
Sbjct: 61 EVSCCVESLLPYHSATASALFTSMLCISCRSYGWTPED 98

[Close]

BLAST of Csor.00g114940 vs. ExPASy TrEMBL
Match: A0A6J1KT22 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496977 PE=4 SV=1)

HSP 1 Score: 184 bits (468), Expect = 5.01e-58
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
          MSSAAAM ARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV
Sbjct: 1  MSSAAAMVARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60

Query: 61 EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPE 97
          EVSCCVESLLPYHSATASALFTS+LC SCRSYGWTPE
Sbjct: 61 EVSCCVESLLPYHSATASALFTSMLCISCRSYGWTPE 97

[Close]

BLAST of Csor.00g114940 vs. ExPASy TrEMBL
Match: A0A6J1CKI3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012443 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 3.15e-43
Identity = 80/102 (78.43%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
           MS+AAAMAARSAL S VAR  ISGRLT GAK+KS RSPFG+PK  Q+PLSQSH I R PV
Sbjct: 1   MSTAAAMAARSALRSTVARAAISGRLTGGAKVKSARSPFGMPK--QNPLSQSHRILRSPV 60

Query: 61  EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDD 102
           E+SCCVESLLPYHSATASAL TS+L  S RSYGWTPEDC DD
Sbjct: 61  EMSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPEDCNDD 100

[Close]

BLAST of Csor.00g114940 vs. ExPASy TrEMBL
Match: A0A6J1CMC1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111012443 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 1.07e-40
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MSSAAAMAARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPV 60
          MS+AAAMAARSAL S VAR  ISGRLT GAK+KS RSPFG+PK  Q+PLSQSH I R PV
Sbjct: 1  MSTAAAMAARSALRSTVARAAISGRLTGGAKVKSARSPFGMPK--QNPLSQSHRILRSPV 60

Query: 61 EVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPED 98
          E+SCCVESLLPYHSATASAL TS+L  S RSYGWTPED
Sbjct: 61 EMSCCVESLLPYHSATASALLTSMLSVSRRSYGWTPED 96

[Close]

BLAST of Csor.00g114940 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-15
Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 8   AARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPVEVSCCVE 67
           AARS   S V R  ++   ++     S RS F +P  KQSPL  SH I R PVE+SCCVE
Sbjct: 3   AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLP--KQSPL--SHRIFRSPVELSCCVE 62

Query: 68  SLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDD 103
           ++LPYH+ATASAL  S+L  S RS  WT +DCIDD
Sbjct: 63  TMLPYHTATASALLNSMLSVSGRSI-WTFQDCIDD 92

[Close]

BLAST of Csor.00g114940 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 8   AARSALGSIVARTTISG-RLTSGAK--LKSLRSPFGIPKGKQSPLSQSHCISRFPVEVSC 67
           AARS   S  +R + +  R ++G K    S R+ F +P  KQSPL+    I R PVE+SC
Sbjct: 3   AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMP--KQSPLTNR--IFRSPVELSC 62

Query: 68  CVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDD 103
           CVE++LPYH+ATASAL  S+L  S R  GW  +DC DD
Sbjct: 63  CVETMLPYHTATASALLNSMLSVSRR--GWIVDDCNDD 94

[Close]

BLAST of Csor.00g114940 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-12
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 8  AARSALGSIVARTTISGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFPVEVSCCVE 67
          AARS   S V R  ++   ++     S RS F +P  KQSPL  SH I R PVE+SCCVE
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLP--KQSPL--SHRIFRSPVELSCCVE 62

Query: 68 SLLPYHSATASALFTSLLCTSCRSYGWT 96
          ++LPYH+ATASAL  S+L  S RS  WT
Sbjct: 63 TMLPYHTATASALLNSMLSVSGRSI-WT 85

[Close]

BLAST of Csor.00g114940 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-10
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 8  AARSALGSIVARTTISG-RLTSGAK--LKSLRSPFGIPKGKQSPLSQSHCISRFPVEVSC 67
          AARS   S  +R + +  R ++G K    S R+ F +P  KQSPL+    I R PVE+SC
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMP--KQSPLTNR--IFRSPVELSC 62

Query: 68 CVESLLPYHSATASALFTSLLCTSCRSYGWTPED 99
          CVE++LPYH+ATASAL  S+L  S R  GW  +D
Sbjct: 63 CVETMLPYHTATASALLNSMLSVSRR--GWIVDD 90

[Close]

BLAST of Csor.00g114940 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-10
Identity = 47/103 (45.63%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 2   SSAAAMAARSALGSIVARTTI--SGRLTSGAKLKSLRSPFGIPKGKQSPLSQSHCISRFP 61
           +SA    ARS L +  +R+    +GR  S AK      P      ++SPL       R P
Sbjct: 3   TSAVLSGARSMLRAASSRSAAASTGRFASQAK---SAPPLFRATARRSPLLSP---LRNP 62

Query: 62  VEVSCCVESLLPYHSATASALFTSLLCTSCRSYGWTPEDCIDD 103
           VE+S CVESLLPYHSATASAL TS L  S ++YGW  + C DD
Sbjct: 63  VELSFCVESLLPYHSATASALMTSKLSISGQTYGWLSDACNDD 99

The following BLAST results are available for this feature:

BLAST of Csor.00g114940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	4.9e-09	45.63	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Csor.00g114940 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594588.1	2.54e-97	100.00	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurb...	[more]
XP_023003343.1	3.15e-62	97.06	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_023518414.1	5.22e-61	97.06	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucu...	[more]
KAG7026558.1	1.54e-59	98.98	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurb...	[more]
XP_023003345.1	1.26e-58	96.94	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]

BLAST of Csor.00g114940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KW85	1.52e-62	97.06	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1KRI2	6.11e-59	96.94	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]
A0A6J1KT22	5.01e-58	96.91	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1CKI3	3.15e-43	78.43	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1CMC1	1.07e-40	78.57	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 ...	[more]

BLAST of Csor.00g114940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33847.1	2.1e-15	53.68	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT1G28395.4	2.8e-12	48.98	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G33847.2	3.7e-12	52.27	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT1G28395.5	2.6e-10	47.87	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20585.1	3.5e-10	45.63	nuclear fusion defective 6	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..113
None	No IPR available	PANTHER	PTHR33156:SF49	SUBFAMILY NOT NAMED	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g114940.m01	Csor.00g114940.m01	mRNA