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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTGTAAGCAATGTAAAACCATTTTTTTTGCAACCACCGTCGACAACCGATCCAGTTTACGTACCTCCACCTTCCACAGGTGCATGGAAACAAGATGAGAAACCCAGGGAGTTTTCCATCAAACCTGCTGTCCATGATCAACCCATTCCAGCCCTCAGCCTCGAGGGGTCGGATGGTCCAGAGCTCGATCAGCGGGAAATGTGCAACTTATATTTAAGAGTCAGGGCTTCTAGTCATTTTTTCTTCAGGTTTCCTTTATACTTTCGTTTTTGGTTTTCCTCTGAAAAGGAAAGTGAACAATCAAGAAGAGTTACTTCACAATAAGTGAAAGCTACGTCAAACAAACCATTTAAAAGTATCATAATATTATATATATATCCAGGATCAAAAGGTACCTCCTTTTTGGTGTGTGGCTCAAAACACGTAACCACCATTCATTTAAAGAACTAATAATCTACGGAACGCTCCTTCATGATCATATCATTGTACATATTTGACTACCGATTTCATTGATTTGTTCCTCCACTTCCTTCCAGCGTTTTGCTCACACATTGGAGCTTAAGCTTCACCTTTTCTAATGACTTGTGACACTGCAACCATTTGCTTTTGGATTCCCGAAAACGCATCCTTGCAAACTTTTTTTACGAGAGAGAAAACAGGTTTATGCAAGTAGAATCGTATGAGATATCCGGATGTCAACAAAACGAAAAGAAAAGAAAAATACAGACGACATATGACATACGACTGGTCGTCTCAATATTGACGATCACAAAAAGAGATTAATCAACACGAACGATTTTCTATGCACTACACGCAGTAACGTCAAAGCACTGATTTAATTACAACTAACAACCTGCAAATTTATATACATTCACAAGGATTGGAGAAATCCCAAGTTTTGTAAGTTTCCACAAACGGGATATTGGTTCATAAGAACAGAACGTTTGATAGATTCATTCAGATTATTCCATCAGATGGATTTAAAGGGAAATAATTACAAGCCAATGCAAAATGTCATTTATCCCCTTTACGAGTTCGTCTCAAATGTATTTGGAAAGCTTGAAGCTCGGAAACAAGTAATGTCCTTACCTTAGGTCGGACGTGCAACAAGAATGGCCATGGCCAGTCCCCCCACATTTCCAGAATAAGATTGAATGATATAGCAGAAGTTTTTGCAATCACCAGCATCCTCAAAAGTCAATAACAATGGCAAGGCTTTGGCTCAAGTTCAAGATCTTCAGCCATCTTCCGAAGGAATGAATCCTACTCTCTGCTCTCCCTCTTGCCCAGTATTACAGTTCGATGCACTGTAA mRNA sequence ATGGCTGTAAGCAATGTAAAACCATTTTTTTTGCAACCACCGTCGACAACCGATCCAGTTTACGTACCTCCACCTTCCACAGGTGCATGGAAACAAGATGAGAAACCCAGGGAGTTTTCCATCAAACCTGCTGTCCATGATCAACCCATTCCAGCCCTCAGCCTCGAGGGGTCGGATGGTCCAGAGCTCGATCAGCGGGAAATGTGCAACTTATATTTAAGAAAGTTTTTGCAATCACCAGCATCCTCAAAAGTCAATAACAATGGCAAGGCTTTGGCTCAAGTTCAAGATCTTCAGCCATCTTCCGAAGGAATGAATCCTACTCTCTGCTCTCCCTCTTGCCCAGTATTACAGTTCGATGCACTGTAA Coding sequence (CDS) ATGGCTGTAAGCAATGTAAAACCATTTTTTTTGCAACCACCGTCGACAACCGATCCAGTTTACGTACCTCCACCTTCCACAGGTGCATGGAAACAAGATGAGAAACCCAGGGAGTTTTCCATCAAACCTGCTGTCCATGATCAACCCATTCCAGCCCTCAGCCTCGAGGGGTCGGATGGTCCAGAGCTCGATCAGCGGGAAATGTGCAACTTATATTTAAGAAAGTTTTTGCAATCACCAGCATCCTCAAAAGTCAATAACAATGGCAAGGCTTTGGCTCAAGTTCAAGATCTTCAGCCATCTTCCGAAGGAATGAATCCTACTCTCTGCTCTCCCTCTTGCCCAGTATTACAGTTCGATGCACTGTAA Protein sequence MAVSNVKPFFLQPPSTTDPVYVPPPSTGAWKQDEKPREFSIKPAVHDQPIPALSLEGSDGPELDQREMCNLYLRKFLQSPASSKVNNNGKALAQVQDLQPSSEGMNPTLCSPSCPVLQFDAL
Homology
BLAST of Csor.00g108630 vs. NCBI nr
Match: KAG6597075.1 (hypothetical protein SDJN03_10255, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 251 bits (642), Expect = 2.62e-84 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query: 1 MAVSNVKPFFLQPPSTTDPVYVPPPSTGAWKQDEKPREFSIKPAVHDQPIPALSLEGSDG 60
MAVSNVKPFFLQPPSTTDPVYVPPPSTGAWKQDEKPREFSIKPAVHDQPIPALSLEGSDG
Sbjct: 1 MAVSNVKPFFLQPPSTTDPVYVPPPSTGAWKQDEKPREFSIKPAVHDQPIPALSLEGSDG 60
Query: 61 PELDQREMCNLYLRKFLQSPASSKVNNNGKALAQVQDLQPSSEGMNPTLCSPSCPVLQFD 120
PELDQREMCNLYLRKFLQSPASSKVNNNGKALAQVQDLQPSSEGMNPTLCSPSCPVLQFD
Sbjct: 61 PELDQREMCNLYLRKFLQSPASSKVNNNGKALAQVQDLQPSSEGMNPTLCSPSCPVLQFD 120
Query: 121 AL 122
AL
Sbjct: 121 AL 122
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6597075.1 | 2.62e-84 | 100.00 | hypothetical protein SDJN03_10255, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..37 |
Relationships
The following mRNA feature(s) are a part of this gene:
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