Csor.00g108100 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g108100
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr06: 7435386 .. 7439080 (+)
RNA-Seq ExpressionCsor.00g108100
SyntenyCsor.00g108100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCACTCCTGGCCTCGGCATCGCTCTCGTTGCTTTCGGCATCTACCTTCTCGGCGAGCAAGTATATAACAGGATCCATTCTCCTTCTTCCTCTCACCATCACCATGCTGATGCTTCCTCCGCCACCCATTAACTCTTACCGGTGATTTCCCTAACTCTTCACTCCGGTTTTCATTTTAATACTTTCTTCCCTCCGCCGTCGGGGTGAATTCTGTCGTGTTTGAATCTTGTCTATTCATTTTCCCCTAGTTTTCTGTTTTAAATGAATTTTTATCCCGCTCTCATCTGAAGAGAACGAATGTGTTTCTTTTTTTTTCATCTTTCTGGGTCAAGGTTGCCCGTAATTTCGATGGGGTTTCTTTTTTATGTTCTAGAATTTCGCAGTGCTTCCTATTTTTCGATGTGCTATTTCTTTTTAAATGTATTCTGCGGCAATCTGTGGCGTGTTGTTGTCTATAATCGTTCAATGCTATAGATCTGTCTTTTATGTATACTTCTAAATAAATTAAGGGAGGAACGCACAATTTTTCCTGCTGCTGGTTATGACAATTTTGAATTTCTTGGAAGTTTAGCCTGATTAACTTTGGTAATTATGTTAGTGGTTGCTGGAATGGAAGTCGTTTTTATTTTTAGTAGTCTGTATTGGATATATTAATTAAGTCATGGGATATTTACTTCGAGTTTTCGATTTCATTATTCATGTATTGCTTGCATATTCGTTCTTACCCAGGAATAGAGCTTGGTTCTTGTGTCGTTGTGACTGGTGTATCATAGTTTGATTGGATGCGCTATGAACTGTGATGCCATGAACATTGCGTTTTAACTGTTTTGGAGCTTTGTATGAAGGAATTGTGTCTTGGTGTTGTTTCTGCACCTACACGGGTATAGTCTCTGTTCTGTTCATTTGTCAAACCACTTTAAAATTATGGAACTTAGGAATAGCTATCTAGAGTACCAATTTGAATTTCCTGTCGCTTAGCTATGCGACAAATCCTCGCTATGTCAATTCCCCCTAATGATGAGGAGAATGGTCTTTTAATACTTTATTTCTTCTAAAGAATGCTTCTAATAGAATGTAGATAATATCTCAAGCTGTATGCATTTATATTTTCTCTGCAGCATTCTTCATTAGAAATAAACCGCTCTCCATTGAATAACAAAGTTTCATGGCTTGACAATGCATCTGGATGCACAAGGGCATCACTGGCATATGTATGTCTTATCCCCAAGTCTTTTTCTGAATTTAATGCAAGGGGAATTACCGATGTAGTGTCCTATCTCTTAAAAAAGATACAATATACAAGGTGAAATACTTTAGGCTCAATCTTGTTACAAGATTATGTAAGATTATAGTTATAACCTTGGTTGATAGATTGACGAAAGTCCTTCCTTGCACTATTTCCTACTCCCAAGGGGCCTGTTCTCTGTTAATTAGAGATGCAAGTATGAATGAGACCAATGTCTGTCTTATCTCTTTAAAAAAGATAAGATATACAAGGTGAAATACTTTAGACTCAATCTTGTTACTAGATTACATAAGATTATAGTTATGACTTGGTTGATAGATTGAGGAAAGTCCATCCTAGCACTATTTCAACTGCCAAGACACAAATCTAATACCAAGTGTTGATTGCTAACCAAGTCATTGAAGACTAGGAAAACTGATGACCATGTGGATTTCATACATGAAGTCATGGGGAGGAAGGGATTTGAGTTTAAGTGGAGACCTGAGTGTGGAGTTGTATAAGTTCAGTAATTTTTTCCCATATTTGTCAATGGGAAACCTAGGGGCAAGATATTTGCTTTTATAGGTCTTAGACGAGGGATCCTCTATCACCCTTTCTCTTTATCTTAGGGGTGAATGTTCTAAGTATGTTAATTTCGTTTGGAGTGCATAAAAGGGGTGGAAGAGGGGTTTAAGGTGGGAAAGGAGTTAAGGAGTTGATTCATCTATTGCATTTTCAGCTTGTTGATGACACCCGTTTTGTCTATTCGGGATTGGGAGGATCATTTGTTAATCTTAATGGTTTTTTGTCTTTCTTTGAAGTTTGTTTTTTTCCTTAACATTAATAGGGACAAAAACTCCATTGTAGGTTTAAACTTCTACCCCTCTAAGTTGAGTTCTTTGGCTTCTTTGGTTGGGTGTGAGGTGATTCAGTTCCCTTCTTATCTAGAATTTCTTTTGGGTGGTATTCTGAAGAGTGAGGGTTTATAGAGTCTTGTTATAGAAAAAATTCATAACCGATTGTCTACATGGGTAAGCATCTTCTTCTTGGGAGACGCACTCTTGTTCCCTTGGTGTTGAGTGGATAAAAGGGGTGGGAGAGGAGTTTAAGGTGGGAAAGGAGTTAAGGAGTTGATGCATCTAGTGCATTTTCAGCTTGTTGATGACACCTTTTTCAATTTGGGATTGGGAGGATCATTTGCTAATATTCTTAGAAGTTTGTTTTTTCCTTGAGATTAATAGGGCAAAAGCTCCATTGTAGGTTTGAACTTCTACCCCTCTAGGTTGAGTTCTTTGGCTTCTTTGGTTGGGTGTGAGGTGGTTCAATTCCCTTCCTCTTATCTAGAATTTCTTTTGGGTGCACGTACATATTTGGGTTGGCCCAATGATAAGTCCATTGGGGAGGCCTTACGAGCCGATCCAAATGTGGCATAAATGGGTCAGCCCATGAGTCAGATCGATCGGGCTGGTCAAACTTTGCTTTTGAACCAATCATGGATCAATGGGCTTAACTTGGGCCAACCTTTGGGCATGGCCTTGTTGATGAGGTTGAACCCAGGGAAAAGGGAATTCAAGATTTGAACCCTTGATCTTCTATGGGTTTCTCTCACAATTATCTTTCTCACATCTTGCCTGCCACTTTTTTACCCTAAGGTGTCTTTTCTTTCTCCACTCTCTAGAATAACTTTTCAAAGGTCAAAATTTTCGTGTGACAAGTTTTACATAGGAAGTCAATACCATGGATTGTGTTCAAAAACACTCTGTGTTGTACTTGCTTTGGTGCATTCTTTATAGGTAGCAAGAGGAGGACCTTGATCATATGTTATGAGGTAGCCAGTTTGCACAATTGCTTTGGATTCAGAGGGATGGGTTGATTTGGATGTTTGTCATGGAGTAAGGATGGTTACTCTATGGTTGAGAGCAGGAAATGTTTCATGGCATGCTAGCTTCTTTGTTATTTTGTGGGACATTTAGCTTGAGAGGAATAGGATGAAGTTTATAGAGTTAGAGAGTTCGTCTGTGGAGGTTTGGGAGACCCGTGGTTACATGGCCTTTGTAAATAGGAGCTATGTTGTATTATGTTGGATTGAATTAGGTTTTGAACTCTTTGTTATTGTTTTTGTTTTCAGTAGTATGTCCTTGTATATTATTTCATTTCTCTCAACGGAAGCTTGGTTTCTTACCAAATAACTAAATAAAACTGGTATTTCTAACTTATAATATTTTTCTCTTATTTTTATTAAGTGTTGTTAATTGAATAGAGTTCTATGACAATGTAAAACTTTTTCCCGATGTGTTATGTTCAAAACATCCTCACTGAACTATCTCCTCACTCTTAATGTGTTCGTAAATGTTGTAATCTGTGCAACTTATGTGACTTCTTGCTAATTTTGCAGATGCTTCCTGCTACTGAATCTAAGCTTGGAGTACTACAACACTCTTTCCCTTTTACCCTTTTATGTGCAATAA

mRNA sequence

ATGCCACTCCTGGCCTCGGCATCGCTCTCGTTGCTTTCGGCATCTACCTTCTCGGCGAGCAAGTATATAACAGGATCCATTCTCCTTCTTCCTCTCACCATCACCATGCTGATGCTTCCTCCGCCACCCATTAACTCTTACCGATGCTTCCTGCTACTGAATCTAAGCTTGGAGTACTACAACACTCTTTCCCTTTTACCCTTTTATGTGCAATAA

Coding sequence (CDS)

ATGCCACTCCTGGCCTCGGCATCGCTCTCGTTGCTTTCGGCATCTACCTTCTCGGCGAGCAAGTATATAACAGGATCCATTCTCCTTCTTCCTCTCACCATCACCATGCTGATGCTTCCTCCGCCACCCATTAACTCTTACCGATGCTTCCTGCTACTGAATCTAAGCTTGGAGTACTACAACACTCTTTCCCTTTTACCCTTTTATGTGCAATAA

Protein sequence

MPLLASASLSLLSASTFSASKYITGSILLLPLTITMLMLPPPPINSYRCFLLLNLSLEYYNTLSLLPFYVQ
Homology
[Close]
BLAST of Csor.00g108100 vs. NCBI nr
Match: KAG6597023.1 (hypothetical protein SDJN03_10203, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (328), Expect = 5.29e-38
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MPLLASASLSLLSASTFSASKYITGSILLLPLTITMLMLPPPPINSYRCFLLLNLSLEYY 60
          MPLLASASLSLLSASTFSASKYITGSILLLPLTITMLMLPPPPINSYRCFLLLNLSLEYY
Sbjct: 1  MPLLASASLSLLSASTFSASKYITGSILLLPLTITMLMLPPPPINSYRCFLLLNLSLEYY 60

Query: 61 NTLSLLPFYVQ 71
          NTLSLLPFYVQ
Sbjct: 61 NTLSLLPFYVQ 71

[Close]
BLAST of Csor.00g108100 vs. NCBI nr
Match: KAG6601665.1 (hypothetical protein SDJN03_06898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.1 bits (144), Expect = 4.79e-09
Identity = 37/48 (77.08%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 2   PLLASASLSLLSASTFSASKYITGSILLLPLTITMLMLPPPPINSYRC 49
           PLLASAS S LSAST SASK  TGSIL L LT TM M PPPPIN YRC
Sbjct: 116 PLLASASPSSLSASTLSASKSTTGSILPLLLTTTMPMHPPPPINCYRC 163

The following BLAST results are available for this feature:
BLAST of Csor.00g108100 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g108100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6597023.15.29e-38100.00hypothetical protein SDJN03_10203, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6601665.14.79e-0977.08hypothetical protein SDJN03_06898, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g108100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g108100 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g108100.m01Csor.00g108100.m01mRNA