Csor.00g108090 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g108090
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Location	Csor_Chr06: 7435142 .. 7435516 (-)
RNA-Seq Expression	Csor.00g108090
Synteny	Csor.00g108090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGAGAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGAGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCCTTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCTACTACTTCAAATTACTATATTACCCTTTAATTTTGTTTCTGGATTTATAA

mRNA sequence

ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGAGAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGAGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCCTTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCTACTACTTCAAATTACTATATTACCCTTTAATTTTGTTTCTGGATTTATAA

Coding sequence (CDS)

ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGAGAAGGTAGATGCCGAAAGCAACGAGAGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGAGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCCTTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCTACTACTTCAAATTACTATATTACCCTTTAATTTTGTTTCTGGATTTATAA

Protein sequence

MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRHCKTALISLSLRSFTSSWMGADRHFLLSSLFSLPSYYFKLLYYPLILFLDL

Homology

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BLAST of Csor.00g108090 vs. NCBI nr
Match: KAG6597022.1 (hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240 bits (613), Expect = 8.08e-80
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60
           MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP
Sbjct: 1   MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60

Query: 61  PEELSSRSQRLIRHCKTALISLSLRSFTSSWMGADRHFLLSSLFSLPSYYFKLLYYPLIL 120
           PEELSSRSQRLIRHCKTALISLSLRSFTSSWMGADRHFLLSSLFSLPSYYFKLLYYPLIL
Sbjct: 61  PEELSSRSQRLIRHCKTALISLSLRSFTSSWMGADRHFLLSSLFSLPSYYFKLLYYPLIL 120

Query: 121 FLDL 124
           FLDL
Sbjct: 121 FLDL 124

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BLAST of Csor.00g108090 vs. NCBI nr
Match: KAA0054191.1 (hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK15069.1 hypothetical protein E5676_scaffold45G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 2.40e-30
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60
          MGGGG I MV+VR R R+DPV+ LLA+KVDAESNE DAEAR GM+ELIG+H MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 74
          PEELS RSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of Csor.00g108090 vs. NCBI nr
Match: KAB2627647.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 75.1 bits (183), Expect = 5.24e-13
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 2  GGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCPP 61
          GGGG        G    + V+ LLA++VDAE NESDA+A  G++ELIGEHRMLPPLV PP
Sbjct: 8  GGGGG-------GGWSDEAVVDLLADEVDAECNESDAKAGRGVAELIGEHRMLPPLVPPP 67

Query: 62 EELSSRSQRLIRHCKTALISLSLRSFT--SSWMGADR 96
          EEL  R Q   RH K       + +FT  S+ + AD+
Sbjct: 68 EELPCRKQFSFRH-KAKAPPTRIATFTCFSARVNADK 96

[Close]

BLAST of Csor.00g108090 vs. NCBI nr
Match: RAL52756.1 (hypothetical protein DM860_007524 [Cuscuta australis])

HSP 1 Score: 69.7 bits (169), Expect = 5.75e-13
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 15 RRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRH 74
          RR +D V+   A +VDAE N+ DAE R+G++ELI +HR+LPPLV PPEELS RS+RL  +
Sbjct: 2  RRSIDLVVGGFAGEVDAEGNKGDAEPRNGVAELIRQHRVLPPLVPPPEELSRRSKRLCHY 61

[Close]

BLAST of Csor.00g108090 vs. NCBI nr
Match: KAB1208638.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella rubra])

HSP 1 Score: 72.4 bits (176), Expect = 3.78e-12
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 18  MDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRHCKT 77
           M+ V+ LLA++VD+E N+ DAEARSG+++LI +HR+LPPLV PPEELS  SQ LI H  +
Sbjct: 1   MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICHYLS 60

Query: 78  ALISLSLRSFTSSWMGADRHFLL 100
             + L L    S+  G D   LL
Sbjct: 61  HSLPLLLLLLLSN--GNDEKHLL 81

[Close]

BLAST of Csor.00g108090 vs. ExPASy TrEMBL
Match: A0A5A7UKX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001210 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 1.16e-30
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60
          MGGGG I MV+VR R R+DPV+ LLA+KVDAESNE DAEAR GM+ELIG+H MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 74
          PEELS RSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of Csor.00g108090 vs. ExPASy TrEMBL
Match: A0A0A0KP64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 1.16e-30
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60
          MGGGG I MV+VR RRR+DPV+ LLA+KVDAESNE DAEARSG++ELIG+H MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 74
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]

BLAST of Csor.00g108090 vs. ExPASy TrEMBL
Match: A0A5N5HLF1 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_042700 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.53e-13
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 2  GGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCPP 61
          GGGG        G    + V+ LLA++VDAE NESDA+A  G++ELIGEHRMLPPLV PP
Sbjct: 8  GGGGG-------GGWSDEAVVDLLADEVDAECNESDAKAGRGVAELIGEHRMLPPLVPPP 67

Query: 62 EELSSRSQRLIRHCKTALISLSLRSFT--SSWMGADR 96
          EEL  R Q   RH K       + +FT  S+ + AD+
Sbjct: 68 EELPCRKQFSFRH-KAKAPPTRIATFTCFSARVNADK 96

[Close]

BLAST of Csor.00g108090 vs. ExPASy TrEMBL
Match: A0A328E5M9 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_007524 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.79e-13
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 15 RRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRH 74
          RR +D V+   A +VDAE N+ DAE R+G++ELI +HR+LPPLV PPEELS RS+RL  +
Sbjct: 2  RRSIDLVVGGFAGEVDAEGNKGDAEPRNGVAELIRQHRVLPPLVPPPEELSRRSKRLCHY 61

[Close]

BLAST of Csor.00g108090 vs. ExPASy TrEMBL
Match: A0A6A1V9T8 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR7G029153 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.83e-12
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 18  MDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRHCKT 77
           M+ V+ LLA++VD+E N+ DAEARSG+++LI +HR+LPPLV PPEELS  SQ LI H  +
Sbjct: 1   MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICHYLS 60

Query: 78  ALISLSLRSFTSSWMGADRHFLL 100
             + L L    S+  G D   LL
Sbjct: 61  HSLPLLLLLLLSN--GNDEKHLL 81

The following BLAST results are available for this feature:

BLAST of Csor.00g108090 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g108090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597022.1	8.08e-80	100.00	hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0054191.1	2.40e-30	75.68	hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK150...	[more]
KAB2627647.1	5.24e-13	49.48	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Pyrus ussuriensis x Py...	[more]
RAL52756.1	5.75e-13	58.33	hypothetical protein DM860_007524 [Cuscuta australis]	[more]
KAB1208638.1	3.78e-12	51.81	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella...	[more]

BLAST of Csor.00g108090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKX3	1.16e-30	75.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KP64	1.16e-30	75.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1	[more]
A0A5N5HLF1	2.53e-13	49.48	4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Pyrus ussuriensis x Pyrus ...	[more]
A0A328E5M9	2.79e-13	58.33	Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_007524 PE=4 SV=1	[more]
A0A6A1V9T8	1.83e-12	51.81	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morel...	[more]

BLAST of Csor.00g108090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g108090.m01	Csor.00g108090.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050518	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity