Csor.00g107930 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g107930
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 7282981 .. 7284680 (-)
RNA-Seq Expression	Csor.00g107930
Synteny	Csor.00g107930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTAGAATCTTCTCTCCTTCTCCTTTGTATTGGCGTTGCTGGTTTAAGGTCCTCTTTTCACATGCCCGCTTTGTATGGTTCAACTTCATTTCCATTTCCATTTCCTGTACCACTCATCATTATTGCTCCCTCATCTTACTTTTCTTTTCCTCTTTTCTAATATCTTATGTCACATGCTAACAACGTAACAACCCATGTTGTGAGATTTCATGTCGGTTAGAGAGGTGAACGAAACCCCCTTTTATAACGATCTGAAAATCTTGAGTGAAAGTTTGAAAATGAATATCCAAAGAGGACAATATTTACTGGTAATTGACTTACATTGTTAGATGTTTTCTTTAAAATATGGCAAAAACCCGTTTAGAAAAGACCATTTTCTACTTGATCTCAGCAAGTTCTAAATGTTTTGGCGACTGTGACAGAACAGTGTATGGGGTTTCATCCTATATAGACACAAAAGCATGAAGGAAAGGGACAAGATTTTATATAATTCAATGGCATATACCTTATAATAACAACAAATTTTGTTGGGTAGCTCTCAGTTGATTAAGATGTGGTGATTGATTATTGAAGGAAAGGTAAAATTGTTAAGTCTTACTCAACTGGTGTGGCAGTGAGCAGTTCGCCAGTCCCTTAAAACTAAGCCTCCTTAACGCTTTTACTCACTGCCACTGTCCTGAGTGAATGCCTAGCCCATCCATCCAAAAGTGTAGGCGCAGCGGAGGGGAGGCGGAGTGGAGCGTCCCTACATATTTGAAAAGAGGGACAATCGTGGGCTCCACGCCTCCCTCCCTTCTCTTTCACAGTCATTTTCTTTCCGCCCAAAGCAAAGCAAAAGTCTTTTCCGGATTCTGCTCTCATTCTTTGTTTTACCATTCCTTCTATTACCTCCTCCTCCAGATCCTTTCTCTGGGTCACTCACACTTCGCTCCGCCGCACCGTCTCTCTCTGCCTCAACCTTCCAGGACTCTACCGTCGTCGAATTGCACAAACCCTCCATACTGCTCTGCTCTTCTCCTACAATATCGTCTCACCAGGTTGTTCCTGTTTTCTTGCTCATTACCTCTTTCAGATCTCTTTATTTTCCTTGTTGCGTTGCTTTCAGTTCATTTTACGCTTGCCCTCGCTTTTCTACTCTCTTCCGGAGCTTGCAATGCCAGGAAACAAAGCATACATTGTAGCAATGTGATTAAAAGGAACCGTCTATAAAACCCTTTTAACTATATCAATGTTAGAGTTTCACTTCTGCTTATTTCCTGAGCTTCCCGTTTTTGTCTGCATAACCAAGAAATTCGAATTGGGTTTTGTACTTTCTTATGCTCCAAGTACAGGGTTGTGTCACTAACCCGGAGCTAAGCTATTCTTCCGATTGCGTCAGGTTATTCGGATAAGTTTTAGTTCTTGCGGATCTCTGTTTCCATTACGTTTGGGGCCTTCTTGTGTTCTTCAACTGCTTGTCCTTACTTATTGTGGGATACTCATTTCACTGATATTTAAGAAAGCATGGAAGACTGAATAAGGATATATTGATTCGTATGTTACCTGTTGAAGATAGGATTAACTGAACTAAAATCATATGTGCAGATCTTTTTCACTTGGAAGCTTCTCTATGTGATGACACAAGTCACTGGACATGGAGAGGATTCCAGAATCAAAAGCACTTCCATTATTACTGCCCATAGAGATGCTTCCTGA

mRNA sequence

ATGAAACTAGAATCTTCTCTCCTTCTCCTTTGTATTGGCGTTGCTGGTTTAAGGAAAGGTAAAATTGTTAAGTCTTACTCAACTGGTGTGGCAGCGCAGCGGAGGGGAGGCGGAGTGGAGCGTCCCTACATATTTGAAAAGAGGGACAATCGTGGGCTCCACGCCTCCCTCCCTTCTCTTTCACAGTCATTTTCTTTCCGCCCAAAGCAAAGCAAAAGTCTTTTCCGGATTCTGCTCTCATTCTTTGTTTTACCATTCCTTCTATTACCTCCTCCTCCAGATCCTTTCTCTGGGTCACTCACACTTCGCTCCGCCGCACCGTCTCTCTCTGCCTCAACCTTCCAGGACTCTACCGTCGTCGAATTGCACAAACCCTCCATACTGCTCTGCTCTTCTCCTACAATATCGTCTCACCAGATCTTTTTCACTTGGAAGCTTCTCTATGTGATGACACAAGTCACTGGACATGGAGAGGATTCCAGAATCAAAAGCACTTCCATTATTACTGCCCATAGAGATGCTTCCTGA

Coding sequence (CDS)

ATGAAACTAGAATCTTCTCTCCTTCTCCTTTGTATTGGCGTTGCTGGTTTAAGGAAAGGTAAAATTGTTAAGTCTTACTCAACTGGTGTGGCAGCGCAGCGGAGGGGAGGCGGAGTGGAGCGTCCCTACATATTTGAAAAGAGGGACAATCGTGGGCTCCACGCCTCCCTCCCTTCTCTTTCACAGTCATTTTCTTTCCGCCCAAAGCAAAGCAAAAGTCTTTTCCGGATTCTGCTCTCATTCTTTGTTTTACCATTCCTTCTATTACCTCCTCCTCCAGATCCTTTCTCTGGGTCACTCACACTTCGCTCCGCCGCACCGTCTCTCTCTGCCTCAACCTTCCAGGACTCTACCGTCGTCGAATTGCACAAACCCTCCATACTGCTCTGCTCTTCTCCTACAATATCGTCTCACCAGATCTTTTTCACTTGGAAGCTTCTCTATGTGATGACACAAGTCACTGGACATGGAGAGGATTCCAGAATCAAAAGCACTTCCATTATTACTGCCCATAGAGATGCTTCCTGA

Protein sequence

MKLESSLLLLCIGVAGLRKGKIVKSYSTGVAAQRRGGGVERPYIFEKRDNRGLHASLPSLSQSFSFRPKQSKSLFRILLSFFVLPFLLLPPPPDPFSGSLTLRSAAPSLSASTFQDSTVVELHKPSILLCSSPTISSHQIFFTWKLLYVMTQVTGHGEDSRIKSTSIITAHRDAS

Homology

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BLAST of Csor.00g107930 vs. NCBI nr
Match: KAG6597007.1 (hypothetical protein SDJN03_10187, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 336 bits (861), Expect = 5.62e-116
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MKLESSLLLLCIGVAGLRKGKIVKSYSTGVAAQRRGGGVERPYIFEKRDNRGLHASLPSL 60
           MKLESSLLLLCIGVAGLRKGKIVKSYSTGVAAQRRGGGVERPYIFEKRDNRGLHASLPSL
Sbjct: 1   MKLESSLLLLCIGVAGLRKGKIVKSYSTGVAAQRRGGGVERPYIFEKRDNRGLHASLPSL 60

Query: 61  SQSFSFRPKQSKSLFRILLSFFVLPFLLLPPPPDPFSGSLTLRSAAPSLSASTFQDSTVV 120
           SQSFSFRPKQSKSLFRILLSFFVLPFLLLPPPPDPFSGSLTLRSAAPSLSASTFQDSTVV
Sbjct: 61  SQSFSFRPKQSKSLFRILLSFFVLPFLLLPPPPDPFSGSLTLRSAAPSLSASTFQDSTVV 120

Query: 121 ELHKPSILLCSSPTISSHQIFFTWKLLYVMTQVTGHGEDSRIKSTSIITAHRDAS 175
           ELHKPSILLCSSPTISSHQIFFTWKLLYVMTQVTGHGEDSRIKSTSIITAHRDAS
Sbjct: 121 ELHKPSILLCSSPTISSHQIFFTWKLLYVMTQVTGHGEDSRIKSTSIITAHRDAS 175

The following BLAST results are available for this feature:

BLAST of Csor.00g107930 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g107930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597007.1	5.62e-116	100.00	hypothetical protein SDJN03_10187, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g107930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g107930 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g107930.m01	Csor.00g107930.m01	mRNA