Csor.00g107910 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g107910
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ethylene-responsive transcription factor 13-like
Location	Csor_Chr06: 7276525 .. 7277040 (-)
RNA-Seq Expression	Csor.00g107910
Synteny	Csor.00g107910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGTAACAGCAATTGCTCACAAGGGTCGTCGTCGTCATCGTCGTCAGAGGTGTTTCTGTTGGAGTGGATTCGGCGACATCTTTTGGAGGACGAGTTGGATTCGGTTGGGGGATTAGGGAAAAATACTCCGAGTTTGACGAGTAGTGATGGGGTTACGGATATCGAGGCCCCCGGGAAGGGGAGTTCGATTAGAGGGCTGCAGTTCAGAGGAGTGAGGAGGAGGCCATGGGGGAAGTACGCAGCAGAGATCAGAGACCCCAATAGAAAAGGGGCTCGCATATGGCTGGGGACATACCAGACCGCTGAAGAGGCTGCTTTGGCTTACGATCGAGCTGCTTTTCAGATGCGGGGAGCCAAGGCCAAGCTCAACTTTCCTCACATGATTGGTTCCGCGGAGGCGCTGATTGGCATAGGCTGCTGTTACCCTAAGCGCGCTTCCCCTGATTCCCCTCCGCCTCTGTTCAGCGTCAAGCGCCCTAGAACCGACTCGCCCTCAATGCCACGATGTTAA

mRNA sequence

ATGTCGAGTAACAGCAATTGCTCACAAGGGTCGTCGTCGTCATCGTCGTCAGAGGTGTTTCTGTTGGAGTGGATTCGGCGACATCTTTTGGAGGACGAGTTGGATTCGGTTGGGGGATTAGGGAAAAATACTCCGAGTTTGACGAGTAGTGATGGGGTTACGGATATCGAGGCCCCCGGGAAGGGGAGTTCGATTAGAGGGCTGCAGTTCAGAGGAGTGAGGAGGAGGCCATGGGGGAAGTACGCAGCAGAGATCAGAGACCCCAATAGAAAAGGGGCTCGCATATGGCTGGGGACATACCAGACCGCTGAAGAGGCTGCTTTGGCTTACGATCGAGCTGCTTTTCAGATGCGGGGAGCCAAGGCCAAGCTCAACTTTCCTCACATGATTGGTTCCGCGGAGGCGCTGATTGGCATAGGCTGCTGTTACCCTAAGCGCGCTTCCCCTGATTCCCCTCCGCCTCTGTTCAGCGTCAAGCGCCCTAGAACCGACTCGCCCTCAATGCCACGATGTTAA

Coding sequence (CDS)

ATGTCGAGTAACAGCAATTGCTCACAAGGGTCGTCGTCGTCATCGTCGTCAGAGGTGTTTCTGTTGGAGTGGATTCGGCGACATCTTTTGGAGGACGAGTTGGATTCGGTTGGGGGATTAGGGAAAAATACTCCGAGTTTGACGAGTAGTGATGGGGTTACGGATATCGAGGCCCCCGGGAAGGGGAGTTCGATTAGAGGGCTGCAGTTCAGAGGAGTGAGGAGGAGGCCATGGGGGAAGTACGCAGCAGAGATCAGAGACCCCAATAGAAAAGGGGCTCGCATATGGCTGGGGACATACCAGACCGCTGAAGAGGCTGCTTTGGCTTACGATCGAGCTGCTTTTCAGATGCGGGGAGCCAAGGCCAAGCTCAACTTTCCTCACATGATTGGTTCCGCGGAGGCGCTGATTGGCATAGGCTGCTGTTACCCTAAGCGCGCTTCCCCTGATTCCCCTCCGCCTCTGTTCAGCGTCAAGCGCCCTAGAACCGACTCGCCCTCAATGCCACGATGTTAA

Protein sequence

MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC

Homology

[Close]

BLAST of Csor.00g107910 vs. ExPASy Swiss-Prot
Match: Q8L9K1 (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana OX=3702 GN=ERF13 PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 3.6e-27
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 42  KNTPSLTSSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQ 101
           +N P  T + G     AP +    +G+Q+RGVRRRPWGK+AAEIRDP + GAR+WLGTY+
Sbjct: 71  ENKPPATKASG---SHAPRQ----KGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYE 130

Query: 102 TAEEAALAYDRAAFQMRGAKAKLNFPHMIGSAEALIGIGCCY------PKRASPD 151
           T E+AA+AYDRAAFQ+RG+KAKLNFPH+IGS        C Y      P+R SP+
Sbjct: 131 TPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS--------CKYEPVRIRPRRRSPE 170

[Close]

BLAST of Csor.00g107910 vs. ExPASy Swiss-Prot
Match: Q40476 (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum OX=4097 GN=ERF1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-24
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 66  RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLN 125
           RG  +RGVRRRPWGK+AAEIRDP + GAR+WLGTY+T EEAA+AYD+AA++MRG+KA LN
Sbjct: 101 RGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLN 160

Query: 126 FPHMIGSAEALIGIGCCYPKRASPD 151
           FPH IG  E    +     +RASP+
Sbjct: 161 FPHRIGLNEP-EPVRVTAKRRASPE 184

[Close]

BLAST of Csor.00g107910 vs. ExPASy Swiss-Prot
Match: Q9LW50 (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris OX=4096 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-24
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 66  RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLN 125
           +G  +RGVR+RPWGK+AAEIRDP + GAR+WLGTY+TAEEAALAYD+AA++MRG+KA LN
Sbjct: 99  KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLN 158

Query: 126 FPHMIGSAE 135
           FPH IG  E
Sbjct: 159 FPHRIGLNE 167

[Close]

BLAST of Csor.00g107910 vs. ExPASy Swiss-Prot
Match: Q40479 (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum OX=4097 GN=ERF2 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-24
Identity = 50/69 (72.46%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 66  RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLN 125
           +G  +RGVR+RPWGK+AAEIRDP + GAR+WLGTY+TAEEAALAYD+AA++MRG+KA LN
Sbjct: 95  KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLN 154

Query: 126 FPHMIGSAE 135
           FPH IG  E
Sbjct: 155 FPHRIGLNE 163

[Close]

BLAST of Csor.00g107910 vs. ExPASy Swiss-Prot
Match: O04681 (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-23
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 67  GLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNF 126
           G ++RGVRRRPWGKYAAEIRD  R GAR+WLGT++TAEEAALAYDRAAF+MRGAKA LNF
Sbjct: 56  GKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNF 115

Query: 127 PHMIGSAEALI 138
           P  I +A   +
Sbjct: 116 PSEIVNASVSV 126

[Close]

BLAST of Csor.00g107910 vs. NCBI nr
Match: KAG6597005.1 (Ethylene-responsive transcription factor 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 340 bits (873), Expect = 6.13e-118
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPG 60
           MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPG
Sbjct: 1   MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPG 60

Query: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120
           KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA
Sbjct: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120

Query: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 171
           KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC
Sbjct: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 171

[Close]

BLAST of Csor.00g107910 vs. NCBI nr
Match: XP_022950239.1 (ethylene-responsive transcription factor 1-like [Cucurbita moschata])

HSP 1 Score: 327 bits (839), Expect = 9.38e-113
Identity = 166/171 (97.08%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPG 60
           MSSNSNCSQGSSSS   EVFLLEWIRRHLLEDELD VGGLGKNTPSL SSDGVTDIEAPG
Sbjct: 1   MSSNSNCSQGSSSS---EVFLLEWIRRHLLEDELDLVGGLGKNTPSLASSDGVTDIEAPG 60

Query: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120
           KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA
Sbjct: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120

Query: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 171
           KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC
Sbjct: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 168

[Close]

BLAST of Csor.00g107910 vs. NCBI nr
Match: XP_022974259.1 (ethylene-responsive transcription factor 13-like [Cucurbita maxima])

HSP 1 Score: 326 bits (835), Expect = 3.44e-112
Identity = 165/171 (96.49%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPG 60
           MSSNSNCSQGSSSS   EVFLLEWIRRHLLEDELDSVGGLGKNTPSL S DGVTDIEAPG
Sbjct: 1   MSSNSNCSQGSSSS---EVFLLEWIRRHLLEDELDSVGGLGKNTPSLKSGDGVTDIEAPG 60

Query: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120
           KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA
Sbjct: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120

Query: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 171
           KAKLNFPHMIGSAEALIGIGCCYPKRASP+SPPPLFSVKRPRTDSPSMPRC
Sbjct: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPNSPPPLFSVKRPRTDSPSMPRC 168

[Close]

BLAST of Csor.00g107910 vs. NCBI nr
Match: XP_023539438.1 (ethylene-responsive transcription factor 13-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321 bits (823), Expect = 2.25e-110
Identity = 162/171 (94.74%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 1   MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPG 60
           MSSNSNCSQGSSS    EVFLLEWIRRHLLEDELDSVGGLGKNTPSLTS DGVTD E PG
Sbjct: 1   MSSNSNCSQGSSS----EVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSIDGVTDTETPG 60

Query: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120
           KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA
Sbjct: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120

Query: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 171
           KAKLNFPHMIGSAEALIGIGCC+PKRASPDSPPPLFSVKRPRTDSP+MPRC
Sbjct: 121 KAKLNFPHMIGSAEALIGIGCCHPKRASPDSPPPLFSVKRPRTDSPAMPRC 167

[Close]

BLAST of Csor.00g107910 vs. NCBI nr
Match: KAG7028473.1 (Ethylene-responsive transcription factor 13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278 bits (712), Expect = 4.25e-92
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 35  DSVGGLGKNTPSLTSSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGAR 94
           +SVGGLGKNTPSLTSSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGAR
Sbjct: 123 NSVGGLGKNTPSLTSSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGAR 182

Query: 95  IWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPP 154
           IWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPP
Sbjct: 183 IWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPP 242

Query: 155 LFSVKRPRTDSPSMPRC 171
           LFSVKRPRTDSPSMPRC
Sbjct: 243 LFSVKRPRTDSPSMPRC 259

[Close]

BLAST of Csor.00g107910 vs. ExPASy TrEMBL
Match: A0A6J1GF81 (ethylene-responsive transcription factor 1-like OS=Cucurbita moschata OX=3662 GN=LOC111453384 PE=4 SV=1)

HSP 1 Score: 327 bits (839), Expect = 4.54e-113
Identity = 166/171 (97.08%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPG 60
           MSSNSNCSQGSSSS   EVFLLEWIRRHLLEDELD VGGLGKNTPSL SSDGVTDIEAPG
Sbjct: 1   MSSNSNCSQGSSSS---EVFLLEWIRRHLLEDELDLVGGLGKNTPSLASSDGVTDIEAPG 60

Query: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120
           KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA
Sbjct: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120

Query: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 171
           KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC
Sbjct: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 168

[Close]

BLAST of Csor.00g107910 vs. ExPASy TrEMBL
Match: A0A6J1IH30 (ethylene-responsive transcription factor 13-like OS=Cucurbita maxima OX=3661 GN=LOC111472899 PE=4 SV=1)

HSP 1 Score: 326 bits (835), Expect = 1.67e-112
Identity = 165/171 (96.49%), Postives = 166/171 (97.08%), Query Frame = 0


Query: 1   MSSNSNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVTDIEAPG 60
           MSSNSNCSQGSSSS   EVFLLEWIRRHLLEDELDSVGGLGKNTPSL S DGVTDIEAPG
Sbjct: 1   MSSNSNCSQGSSSS---EVFLLEWIRRHLLEDELDSVGGLGKNTPSLKSGDGVTDIEAPG 60

Query: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120
           KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA
Sbjct: 61  KGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGA 120

Query: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPDSPPPLFSVKRPRTDSPSMPRC 171
           KAKLNFPHMIGSAEALIGIGCCYPKRASP+SPPPLFSVKRPRTDSPSMPRC
Sbjct: 121 KAKLNFPHMIGSAEALIGIGCCYPKRASPNSPPPLFSVKRPRTDSPSMPRC 168

[Close]

BLAST of Csor.00g107910 vs. ExPASy TrEMBL
Match: A0A5D3DAY8 (Putative Ethylene-responsive element binding factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00160 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 4.00e-43
Identity = 91/157 (57.96%), Postives = 102/157 (64.97%), Query Frame = 0


Query: 5   SNCSQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVT--DIEAPGKG 64
           S+ S  S   SSS++FLLE IRRHLLED+L      GK + +    DG+   DI   G G
Sbjct: 4   SSSSSSSLEGSSSDLFLLEQIRRHLLEDDL------GKGSTNNNVEDGIIRYDISCSGAG 63

Query: 65  ---------------SSI------------RGLQFRGVRRRPWGKYAAEIRDPNRKGARI 124
                          SSI            RGLQFRGVRRRPWGKYAAEIRDP+RKGARI
Sbjct: 64  WEMSNNNNNNMVDQMSSIIIRDNPEEKSRPRGLQFRGVRRRPWGKYAAEIRDPSRKGARI 123

Query: 125 WLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGS 132
           WLGTY TA++AALAYDRAAFQMRGAKAKLNFPH+I S
Sbjct: 124 WLGTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISS 154

[Close]

BLAST of Csor.00g107910 vs. ExPASy TrEMBL
Match: A0A0A0L893 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116730 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.09e-40
Identity = 88/155 (56.77%), Postives = 98/155 (63.23%), Query Frame = 0


Query: 8   SQGSSSSSSSEVFLLEWIRRHLLEDELDSVGGLGKNTPSLTSSDGVT--DIEAPGKG--- 67
           S  S   SSS++F LE IRRHLLED+L      GK +      DG+   DI   G G   
Sbjct: 5   SSSSLEGSSSDLFHLEQIRRHLLEDDL------GKGSTHNNVEDGIIRYDISRSGAGWEM 64

Query: 68  -----------SSI--------------RGLQFRGVRRRPWGKYAAEIRDPNRKGARIWL 127
                      SSI              RGLQFRGVRRRPWGKYAAEIRDP++KGARIWL
Sbjct: 65  SNNNNNMVDQMSSIIIRDNPEEKSQPRPRGLQFRGVRRRPWGKYAAEIRDPSKKGARIWL 124

Query: 128 GTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGS 132
           GTY TA++AALAYDRAAFQMRGAKAKLNFPH+I S
Sbjct: 125 GTYHTAQDAALAYDRAAFQMRGAKAKLNFPHIISS 153

[Close]

BLAST of Csor.00g107910 vs. ExPASy TrEMBL
Match: A0A6J1DCJ3 (ethylene-responsive transcription factor 14-like OS=Momordica charantia OX=3673 GN=LOC111019776 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 3.36e-40
Identity = 74/133 (55.64%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 15  SSSEVFLLEWIRRHLLEDELD-SVGGLGKNTPSLTSSDGVTDIEAPGKGSSIRGLQFRGV 74
           SS +  LLEWIR HLLE+++D        N  +  +++  +++   G    +   QF+GV
Sbjct: 2   SSGDWDLLEWIREHLLEEKMDPDPDPAASNANANANANSNSEVGGKGSELGVGVQQFKGV 61

Query: 75  RRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHMIGSA 134
           RRRPWGKYAAEIRDPNRKGAR WLGT+ TAE+AALAYDRAAF+MRGAKAKLNFPH+I S 
Sbjct: 62  RRRPWGKYAAEIRDPNRKGARTWLGTFHTAEDAALAYDRAAFKMRGAKAKLNFPHLIDSN 121

Query: 135 EALIGIGCCYPKR 146
                + C   KR
Sbjct: 122 SQPQSLACNTNKR 134

[Close]

BLAST of Csor.00g107910 vs. TAIR 10
Match: AT2G44840.1 (ethylene-responsive element binding factor 13 )

HSP 1 Score: 122.9 bits (307), Expect = 2.6e-28
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 42  KNTPSLTSSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQ 101
           +N P  T + G     AP +    +G+Q+RGVRRRPWGK+AAEIRDP + GAR+WLGTY+
Sbjct: 71  ENKPPATKASG---SHAPRQ----KGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYE 130

Query: 102 TAEEAALAYDRAAFQMRGAKAKLNFPHMIGSAEALIGIGCCY------PKRASPD 151
           T E+AA+AYDRAAFQ+RG+KAKLNFPH+IGS        C Y      P+R SP+
Sbjct: 131 TPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS--------CKYEPVRIRPRRRSPE 170

[Close]

BLAST of Csor.00g107910 vs. TAIR 10
Match: AT4G17500.1 (ethylene responsive element binding factor 1 )

HSP 1 Score: 107.8 bits (268), Expect = 8.5e-24
Identity = 47/72 (65.28%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 63  SSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKA 122
           ++ +G  +RGVR+RPWGK+AAEIRDP + GAR+WLGT++TAE+AALAYDRAAF+MRG++A
Sbjct: 141 TAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA 200

Query: 123 KLNFPHMIGSAE 135
            LNFP  + S E
Sbjct: 201 LLNFPLRVNSGE 212

[Close]

BLAST of Csor.00g107910 vs. TAIR 10
Match: AT5G61600.1 (ethylene response factor 104 )

HSP 1 Score: 105.9 bits (263), Expect = 3.2e-23
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 70  FRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKAKLNFPHM 129
           +RGVRRRPWGKYAAEIRDPN+KG RIWLGTY TA EA  AYD+AAFQ+RG KA LNFP  
Sbjct: 88  YRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLD 147

Query: 130 IG------SAEALIGIGCCYPKRASPDSPP 154
           +       S E +IG+G    ++    SPP
Sbjct: 148 VRVTSETCSGEGVIGLG---KRKRDKGSPP 174

[Close]

BLAST of Csor.00g107910 vs. TAIR 10
Match: AT5G47220.1 (ethylene responsive element binding factor 2 )

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 44  TPSLTSSDGVTDIEAPGKGSSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTA 103
           T + T+ +       P   ++++   +RGVR+RPWGK+AAEIRDP + GAR+WLGT++TA
Sbjct: 91  TENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETA 150

Query: 104 EEAALAYDRAAFQMRGAKAKLNFPHMIGSAE 135
           E+AALAYD AAF+MRG++A LNFP  + S E
Sbjct: 151 EDAALAYDIAAFRMRGSRALLNFPLRVNSGE 181

[Close]

BLAST of Csor.00g107910 vs. TAIR 10
Match: AT2G33710.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-22
Identity = 57/100 (57.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 63  SSIRGLQFRGVRRRPWGKYAAEIRDPNRKGARIWLGTYQTAEEAALAYDRAAFQMRGAKA 122
           S+ R   +RGVR+RPWGK+AAEIRDPN K AR+WLGT+ TAEEAALAYD+AAF+ RG KA
Sbjct: 63  SNSRQRNYRGVRQRPWGKWAAEIRDPN-KAARVWLGTFDTAEEAALAYDKAAFEFRGHKA 122

Query: 123 KLNFPHMIGSAEALIGIGCCYPKRA--------SPDSPPP 155
           KLNFP  I      +     YP  A        +P SPPP
Sbjct: 123 KLNFPEHIRVNPTQL-----YPSPATSHDRIIVTPPSPPP 156

The following BLAST results are available for this feature:

BLAST of Csor.00g107910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9K1	3.6e-27	55.65	Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana OX=3702 GN=E...	[more]
Q40476	2.2e-24	63.53	Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum OX=4097 GN=ERF1 ...	[more]
Q9LW50	3.7e-24	72.46	Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris OX=4096 GN=ER...	[more]
Q40479	3.7e-24	72.46	Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum OX=4097 GN=ERF2 ...	[more]
O04681	2.4e-23	73.24	Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicu...	[more]

BLAST of Csor.00g107910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597005.1	6.13e-118	100.00	Ethylene-responsive transcription factor 13, partial [Cucurbita argyrosperma sub...	[more]
XP_022950239.1	9.38e-113	97.08	ethylene-responsive transcription factor 1-like [Cucurbita moschata]	[more]
XP_022974259.1	3.44e-112	96.49	ethylene-responsive transcription factor 13-like [Cucurbita maxima]	[more]
XP_023539438.1	2.25e-110	94.74	ethylene-responsive transcription factor 13-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028473.1	4.25e-92	99.27	Ethylene-responsive transcription factor 13, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Csor.00g107910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GF81	4.54e-113	97.08	ethylene-responsive transcription factor 1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IH30	1.67e-112	96.49	ethylene-responsive transcription factor 13-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5D3DAY8	4.00e-43	57.96	Putative Ethylene-responsive element binding factor 13 OS=Cucumis melo var. maku...	[more]
A0A0A0L893	1.09e-40	56.77	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116730 PE=...	[more]
A0A6J1DCJ3	3.36e-40	55.64	ethylene-responsive transcription factor 14-like OS=Momordica charantia OX=3673 ...	[more]

BLAST of Csor.00g107910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44840.1	2.6e-28	55.65	ethylene-responsive element binding factor 13	[more]
AT4G17500.1	8.5e-24	65.28	ethylene responsive element binding factor 1	[more]
AT5G61600.1	3.2e-23	61.11	ethylene response factor 104	[more]
AT5G47220.1	1.2e-22	52.75	ethylene responsive element binding factor 2	[more]
AT2G33710.1	2.7e-22	57.00	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 93..109 score: 65.99 coord: 70..81 score: 65.91
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 69..133 e-value: 5.7E-35 score: 132.2
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 70..119 e-value: 1.9E-15 score: 56.8
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 69..127 score: 23.828024
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 69..128 e-value: 7.00714E-31 score: 104.661
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 68..129 e-value: 4.5E-29 score: 102.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..171
None	No IPR available	PANTHER	PTHR31190:SF128	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1	coord: 53..134
IPR044808	Ethylene-responsive transcription factor	PANTHER	PTHR31190	DNA-BINDING DOMAIN	coord: 53..134
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 70..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g107910.m01	Csor.00g107910.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity