Csor.00g107580 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g107580
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA ligase
Location	Csor_Chr06: 6548026 .. 6548499 (+)
RNA-Seq Expression	Csor.00g107580
Synteny	Csor.00g107580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCACAAACCTCTCCTACCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATTTCTTCCACCGCTGTTCCCACCACAAGTAAGTAACTCCCTTTTTTCTTTCACTTTCTACTGGTTTTCCCTAATCAATCTCTGAATTTTCTTGTCTTCCAGGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGTCTCTCTCTGTTTTTTCTCGAGAAAATTTCAAATAATTTTCTCAGCATCCAAACAGGTGTGATTGAGAAATTGAAGCGTGTTTTGTTGTACAAATTTTGTAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGACGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAG

mRNA sequence

ATGGGTCACAAACCTCTCCTACCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATTTCTTCCACCGCTGTTCCCACCACAAGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGACGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAG

Coding sequence (CDS)

ATGGGTCACAAACCTCTCCTACCCCTCACCTTCCTTCTTCTCTTTCTGGCTTTCGCCTTTCTCATTTCTTCCACCGCTGTTCCCACCACAAGAGTCCTCCAATCAAATTTTGATGACCCATCTGCCCAACCTTCCGTTTTCCAGGATTGGAGAGATTTGGAGATAAGCGGTGAAGATTCGCTTGAATTTGTTGACGAAAGATTGTCTGAAGGAAGAGTGGTTTTGGAGAACAACGACTATCCTGGCACAGGAGCAAACAATCACCACGATCCAAAGTCTCCTGCTACCAAACCATAG

Protein sequence

MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP

Homology

[Close]

BLAST of Csor.00g107580 vs. NCBI nr
Match: KAG6596972.1 (hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028446.1 hypothetical protein SDJN02_09627 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194 bits (494), Expect = 1.70e-62
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS 60
          MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS
Sbjct: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS 60

Query: 61 LEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP 98
          LEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP
Sbjct: 61 LEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPATKP 98

[Close]

BLAST of Csor.00g107580 vs. NCBI nr
Match: KGN59481.1 (hypothetical protein Csa_001422 [Cucumis sativus])

HSP 1 Score: 109 bits (272), Expect = 1.03e-28
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISG 60
          MG K     TF LLFLAF+FL+SS    AVPTTR+L+S FD PS Q  V QD RD+EI  
Sbjct: 1  MGQKIF---TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIID 60

Query: 61 EDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95
           DS     ERL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 61 GDSF----ERLFEGRLILENNDYPGTGANNHHDPKSPA 91

[Close]

BLAST of Csor.00g107580 vs. NCBI nr
Match: KAG7017658.1 (hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (256), Expect = 2.50e-26
Identity = 59/96 (61.46%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MGHKPLLPLT-FLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGED 60
          MG K  L L   LLLFL F+ L+SS AVPTTR+ +S FD PSAQ  VFQD RDLE +G D
Sbjct: 1  MGQKISLSLRRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60

Query: 61 SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95
                     GR+VLENNDYPGTGANNHHDP +PA
Sbjct: 61 LF---------GRLVLENNDYPGTGANNHHDPNTPA 87

[Close]

BLAST of Csor.00g107580 vs. NCBI nr
Match: KAA0053852.1 (hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (256), Expect = 2.88e-26
Identity = 63/99 (63.64%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISST---AVPTTRVLQSNFD-DPSAQPSVFQDWRDLEIS 60
          MG K     TF LLFLAF+FL+SS+   AVPTTR+L+S F+  PS Q  V +D RDLEI 
Sbjct: 1  MGQKIF---TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEII 60

Query: 61 GEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95
            DS     ERL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 61 DGDSF----ERLFEGRLILENNDYPGTGANNHHDPKSPA 92

[Close]

BLAST of Csor.00g107580 vs. NCBI nr
Match: KAG6580910.1 (hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102 bits (254), Expect = 5.03e-26
Identity = 59/96 (61.46%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1  MGHKPLLPLT-FLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGED 60
          MG K  L L   LLLFL F+ L+SS AVPTTR+ +S FD PSAQ  VFQD RDLE +G D
Sbjct: 1  MGQKISLSLQRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGD 60

Query: 61 SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95
                     GR VLENNDYPGTGANNHHDP +PA
Sbjct: 61 LF---------GRFVLENNDYPGTGANNHHDPNTPA 87

[Close]

BLAST of Csor.00g107580 vs. ExPASy TrEMBL
Match: A0A0A0LHJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 4.97e-29
Identity = 64/98 (65.31%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISST---AVPTTRVLQSNFDDPSAQPSVFQDWRDLEISG 60
          MG K     TF LLFLAF+FL+SS    AVPTTR+L+S FD PS Q  V QD RD+EI  
Sbjct: 1  MGQKIF---TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEIID 60

Query: 61 EDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95
           DS     ERL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 61 GDSF----ERLFEGRLILENNDYPGTGANNHHDPKSPA 91

[Close]

BLAST of Csor.00g107580 vs. ExPASy TrEMBL
Match: A0A5A7UDI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002430 PE=4 SV=1)

HSP 1 Score: 103 bits (256), Expect = 1.39e-26
Identity = 63/99 (63.64%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISST---AVPTTRVLQSNFD-DPSAQPSVFQDWRDLEIS 60
          MG K     TF LLFLAF+FL+SS+   AVPTTR+L+S F+  PS Q  V +D RDLEI 
Sbjct: 1  MGQKIF---TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEII 60

Query: 61 GEDSLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSPA 95
            DS     ERL EGR++LENNDYPGTGANNHHDPKSPA
Sbjct: 61 DGDSF----ERLFEGRLILENNDYPGTGANNHHDPKSPA 92

[Close]

BLAST of Csor.00g107580 vs. ExPASy TrEMBL
Match: A0A2R6Q481 (Protein Rev like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23042 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.81e-20
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWR-DLEISGED 60
          M HK  LPL  L+LFL F+F++SS AVPT+R L+S  DDP  Q  +  D   D+ + GE 
Sbjct: 1  MEHKGWLPL--LVLFLGFSFVLSSVAVPTSRSLKSFLDDPLVQDLLAPDGEMDMGMDGE- 60

Query: 61 SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 94
           L  V+E   +GR+ LENNDYPGTGANNHHDP +P
Sbjct: 61 -LSNVEEFSMQGRMDLENNDYPGTGANNHHDPNAP 91

[Close]

BLAST of Csor.00g107580 vs. ExPASy TrEMBL
Match: A0A5B6ZB32 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.70e-19
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 1   MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWRDLEISGEDS 60
           M HK  L L  L+LFL F F++SS AVPT+R L+S   DP+AQ    Q   D+   GE  
Sbjct: 38  MEHKAFLRL--LVLFLGFYFVLSSAAVPTSRSLKSIEKDPTAQDLFAQSVMDMRTDGE-- 97

Query: 61  LEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 94
              ++ER  EGR+ +E+NDYPGTGANNHHDPK+P
Sbjct: 98  --LLEERFIEGRMDIESNDYPGTGANNHHDPKTP 125

[Close]

BLAST of Csor.00g107580 vs. ExPASy TrEMBL
Match: A0A7J0GF03 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_20g0011950 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.91e-19
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 0


Query: 1  MGHKPLLPLTFLLLFLAFAFLISSTAVPTTRVLQSNFDDPSAQPSVFQDWR-DLEISGED 60
          M HK  LPL  L+LFL F+F++SS AVPT+R L+S  DDP  Q  +  D   ++ + GE 
Sbjct: 1  MEHKGWLPL--LVLFLGFSFVLSSVAVPTSRSLKSFLDDPLVQDLLAPDGEMEMGMDGES 60

Query: 61 SLEFVDERLSEGRVVLENNDYPGTGANNHHDPKSP 94
          S   V+E   +GR+ LENNDYPGTGANNHHDP +P
Sbjct: 61 SN--VEEFSLQGRMDLENNDYPGTGANNHHDPNTP 91

The following BLAST results are available for this feature:

BLAST of Csor.00g107580 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g107580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596972.1	1.70e-62	100.00	hypothetical protein SDJN03_10152, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN59481.1	1.03e-28	65.31	hypothetical protein Csa_001422 [Cucumis sativus]	[more]
KAG7017658.1	2.50e-26	61.46	hypothetical protein SDJN02_19524 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0053852.1	2.88e-26	63.64	hypothetical protein E6C27_scaffold135G002430 [Cucumis melo var. makuwa]	[more]
KAG6580910.1	5.03e-26	61.46	hypothetical protein SDJN03_20912, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g107580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHJ0	4.97e-29	65.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1	[more]
A0A5A7UDI6	1.39e-26	63.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2R6Q481	6.81e-20	54.74	Protein Rev like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23...	[more]
A0A5B6ZB32	1.70e-19	53.19	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781...	[more]
A0A7J0GF03	3.91e-19	53.68	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_20g0011950 PE=4 SV=1	[more]

BLAST of Csor.00g107580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..98
None	No IPR available	PANTHER	PTHR33474:SF28	PROTEIN, PUTATIVE-RELATED	coord: 4..96
None	No IPR available	PANTHER	PTHR33474	TRANSMEMBRANE PROTEIN	coord: 4..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g107580.m01	Csor.00g107580.m01	mRNA