Csor.00g104060 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g104060
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Csor_Chr20: 1111105 .. 1111578 (-)
RNA-Seq Expression	Csor.00g104060
Synteny	Csor.00g104060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTGGCGGAGGATCAAGCAAAGAATATAGAGAAGGATCGTCGAGCTCGGCTCCAACGACCCCGAGTCGATATGAGTCACAGAAACGGCGAGATTGGAACACTTACGGTCAGTACTTGAACAATCAAAGGCCTCCAGTGGCAGTGTCCCAGAGCAACTTCAACCATGTGTTGGAGTTCCTAAGGTACTTGGATCAATTTGGGAAGACAAAAGTTCATGTAGAAGGCTGCATGTTTTATGGGGAGGCAGAGCCGGCAGGCCCTTGTGGCTGTCCGCTGAAGCAAGCTTGGGGCAGCCTTGACGCTCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAGCATGGAGGGTCCCCTGAGAGTAACCCTTTTGCAAGCGCTTCTATAAGGGTTTATCTTAGAGAAGTTAGGGAGTGTCAAGCCAAAGCTAGAGGAATCCCTTATAAAAAGAAGAAGAAGAAGACCAACCAATAA

mRNA sequence

ATGTCAGGTGGCGGAGGATCAAGCAAAGAATATAGAGAAGGATCGTCGAGCTCGGCTCCAACGACCCCGAGTCGATATGAGTCACAGAAACGGCGAGATTGGAACACTTACGGTCAGTACTTGAACAATCAAAGGCCTCCAGTGGCAGTGTCCCAGAGCAACTTCAACCATGTGTTGGAGTTCCTAAGGTACTTGGATCAATTTGGGAAGACAAAAGTTCATGTAGAAGGCTGCATGTTTTATGGGGAGGCAGAGCCGGCAGGCCCTTGTGGCTGTCCGCTGAAGCAAGCTTGGGGCAGCCTTGACGCTCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAGCATGGAGGGTCCCCTGAGAGTAACCCTTTTGCAAGCGCTTCTATAAGGGTTTATCTTAGAGAAGTTAGGGAGTGTCAAGCCAAAGCTAGAGGAATCCCTTATAAAAAGAAGAAGAAGAAGACCAACCAATAA

Coding sequence (CDS)

ATGTCAGGTGGCGGAGGATCAAGCAAAGAATATAGAGAAGGATCGTCGAGCTCGGCTCCAACGACCCCGAGTCGATATGAGTCACAGAAACGGCGAGATTGGAACACTTACGGTCAGTACTTGAACAATCAAAGGCCTCCAGTGGCAGTGTCCCAGAGCAACTTCAACCATGTGTTGGAGTTCCTAAGGTACTTGGATCAATTTGGGAAGACAAAAGTTCATGTAGAAGGCTGCATGTTTTATGGGGAGGCAGAGCCGGCAGGCCCTTGTGGCTGTCCGCTGAAGCAAGCTTGGGGCAGCCTTGACGCTCTGATAGGGCGGTTGAGAGCTGCTTATGAAGAGCATGGAGGGTCCCCTGAGAGTAACCCTTTTGCAAGCGCTTCTATAAGGGTTTATCTTAGAGAAGTTAGGGAGTGTCAAGCCAAAGCTAGAGGAATCCCTTATAAAAAGAAGAAGAAGAAGACCAACCAATAA

Protein sequence

MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ

Homology

[Close]

BLAST of Csor.00g104060 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-63
Identity = 119/154 (77.27%), Postives = 128/154 (83.12%), Query Frame = 0


Query: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60
           MS      K   E S S  P TPSRYESQKRRDWNT+GQYL NQRPPV +S  + NHVL+
Sbjct: 1   MSSPRERGKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLD 60

Query: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120
           FLRYLDQFGKTKVHV GCMFYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GG PE
Sbjct: 61  FLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPE 120

Query: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKK 155
           +NPFAS +IRVYLREVRECQAKARGIPYKKKKKK
Sbjct: 121 TNPFASGAIRVYLREVRECQAKARGIPYKKKKKK 154

[Close]

BLAST of Csor.00g104060 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.8e-56
Identity = 100/138 (72.46%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 17  SSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVE 76
           SS P TPSRYESQKRRDWNT+ QYL N +PP+A+S+ +  HV+EFL+YLDQFGKTKVHV 
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 77  GCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREV 136
            C ++G  +P  PC CPLKQAWGSLDALIGRLRAAYEE+GG P+SNPFA+ ++R+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 137 RECQAKARGIPYKKKKKK 155
           RE QAKARGIPY+KKK+K
Sbjct: 143 RESQAKARGIPYEKKKRK 160

[Close]

BLAST of Csor.00g104060 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.8e-56
Identity = 99/135 (73.33%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P   SRYESQKRRDWNT+ QYL NQ+PPV +SQ   NH+L+FL+YLDQFGKTKVH+ GC+
Sbjct: 35  PPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCV 94

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           F+G+ EPAG C CPLKQAWGSLDALIGRLRAA+EE+GG PE NPFA   IRV+LREVR+ 
Sbjct: 95  FFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDS 154

Query: 140 QAKARGIPYKKKKKK 155
           QAKARG+PYKK+KK+
Sbjct: 155 QAKARGVPYKKRKKR 169

[Close]

BLAST of Csor.00g104060 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.9e-55
Identity = 101/144 (70.14%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 17  SSAPTTP---SRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKV 76
           ++AP  P   SRYESQKRRDWNT+ QYL N RPP+ +++ +  HV+EFLRYLDQFGKTKV
Sbjct: 20  AAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 79

Query: 77  HVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYL 136
           H  GC FYG+  P GPC CPL+QAWGSLDALIGRLRAAYEE GG+PESNPFA+ ++R+YL
Sbjct: 80  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 139

Query: 137 REVRECQAKARGIPYKKKKKKTNQ 158
           REVR+ QAKARGIPY+KKK+K +Q
Sbjct: 140 REVRDSQAKARGIPYEKKKRKRSQ 163

[Close]

BLAST of Csor.00g104060 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.9e-55
Identity = 101/144 (70.14%), Postives = 121/144 (84.03%), Query Frame = 0


Query: 17  SSAPTTP---SRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKV 76
           ++AP  P   SRYESQKRRDWNT+ QYL N RPP+ +++ +  HV+EFLRYLDQFGKTKV
Sbjct: 20  AAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 79

Query: 77  HVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYL 136
           H  GC FYG+  P GPC CPL+QAWGSLDALIGRLRAAYEE GG+PESNPFA+ ++R+YL
Sbjct: 80  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 139

Query: 137 REVRECQAKARGIPYKKKKKKTNQ 158
           REVR+ QAKARGIPY+KKK+K +Q
Sbjct: 140 REVRDSQAKARGIPYEKKKRKRSQ 163

[Close]

BLAST of Csor.00g104060 vs. NCBI nr
Match: XP_022944662.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022986042.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >XP_023512487.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo] >KAG6570531.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010388.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (820), Expect = 2.57e-110
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60
           MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE
Sbjct: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60

Query: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120
           FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE
Sbjct: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120

Query: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157
           SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ
Sbjct: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157

[Close]

BLAST of Csor.00g104060 vs. NCBI nr
Match: XP_038900865.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 271 bits (694), Expect = 9.52e-91
Identity = 134/150 (89.33%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 7   SSKEYREGSSSSAPTT---PSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLR 66
           SSKEY EGSSSS PTT   PSRYESQKRRDWNT+GQYL NQRPPVA+SQ NFNHVLEFLR
Sbjct: 2   SSKEYGEGSSSSPPTTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLR 61

Query: 67  YLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNP 126
           YLDQFGKTKVHV+GCMFYG+ EP  PC CPLKQAWGSLDALIGRLRAAYEE+GGSPESNP
Sbjct: 62  YLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPESNP 121

Query: 127 FASASIRVYLREVRECQAKARGIPYKKKKK 153
           FASASIRVYLREVRECQAKARGIPYKKKKK
Sbjct: 122 FASASIRVYLREVRECQAKARGIPYKKKKK 151

[Close]

BLAST of Csor.00g104060 vs. NCBI nr
Match: XP_008448236.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_016900524.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >TYK04855.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (691), Expect = 5.21e-90
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 7   SSKEYREGSSSSAPT--TPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRY 66
           SSKEY EGSS+S PT  TPSRYESQKRRDWNT+GQYL NQRPPVA+SQ NFNHVLEFLRY
Sbjct: 11  SSKEYGEGSSNSPPTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRY 70

Query: 67  LDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPF 126
           LDQFGKTKVHV+GCMFYG+ EP  PC CPLKQAWGSLDALIGRLRAAYEE+GGSPE+NPF
Sbjct: 71  LDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPF 130

Query: 127 ASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157
           ASASIRVYLREVRECQAKARGIPYKKKKK   Q
Sbjct: 131 ASASIRVYLREVRECQAKARGIPYKKKKKSNKQ 163

[Close]

BLAST of Csor.00g104060 vs. NCBI nr
Match: KAA0062179.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (691), Expect = 5.77e-90
Identity = 133/151 (88.08%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 7   SSKEYREGSSSSAPT---TPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLR 66
           SSKEY EGSS+S PT   TPSRYESQKRRDWNT+GQYL NQRPPVA+SQ NFNHVLEFLR
Sbjct: 11  SSKEYGEGSSNSPPTAATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLR 70

Query: 67  YLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNP 126
           YLDQFGKTKVHV+GCMFYG+ EP  PC CPLKQAWGSLDALIGRLRAAYEE+GGSPE+NP
Sbjct: 71  YLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNP 130

Query: 127 FASASIRVYLREVRECQAKARGIPYKKKKKK 154
           FASASIRVYLREVRECQAKARGIPYKKKKKK
Sbjct: 131 FASASIRVYLREVRECQAKARGIPYKKKKKK 161

[Close]

BLAST of Csor.00g104060 vs. NCBI nr
Match: XP_022947237.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022970867.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima] >KAG6604771.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034898.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270 bits (689), Expect = 6.75e-90
Identity = 131/148 (88.51%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 9   KEYREGSSSSAPTT---PSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYL 68
           KEY EGSSSS PTT   PSRYESQKRRDWNT+GQYL NQRPPVA++Q NFNHVLEFLRYL
Sbjct: 7   KEYGEGSSSSPPTTTTTPSRYESQKRRDWNTFGQYLKNQRPPVALAQCNFNHVLEFLRYL 66

Query: 69  DQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFA 128
           DQFGKTKVHV+GCMFYG+ EP  PC CPLKQAWGSLDALIGRLRAAYEEHGGSPE+NPFA
Sbjct: 67  DQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEEHGGSPETNPFA 126

Query: 129 SASIRVYLREVRECQAKARGIPYKKKKK 153
           SASIRVYLREVRECQAKARGIPYKKKKK
Sbjct: 127 SASIRVYLREVRECQAKARGIPYKKKKK 154

[Close]

BLAST of Csor.00g104060 vs. ExPASy TrEMBL
Match: A0A6J1J6H9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111483896 PE=3 SV=1)

HSP 1 Score: 320 bits (820), Expect = 1.24e-110
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60
           MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE
Sbjct: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60

Query: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120
           FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE
Sbjct: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120

Query: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157
           SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ
Sbjct: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157

[Close]

BLAST of Csor.00g104060 vs. ExPASy TrEMBL
Match: A0A6J1FW75 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111449051 PE=3 SV=1)

HSP 1 Score: 320 bits (820), Expect = 1.24e-110
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60
           MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE
Sbjct: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60

Query: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120
           FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE
Sbjct: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120

Query: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157
           SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ
Sbjct: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157

[Close]

BLAST of Csor.00g104060 vs. ExPASy TrEMBL
Match: A0A1S4DX19 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103490491 PE=3 SV=1)

HSP 1 Score: 270 bits (691), Expect = 2.52e-90
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 7   SSKEYREGSSSSAPT--TPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRY 66
           SSKEY EGSS+S PT  TPSRYESQKRRDWNT+GQYL NQRPPVA+SQ NFNHVLEFLRY
Sbjct: 11  SSKEYGEGSSNSPPTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRY 70

Query: 67  LDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPF 126
           LDQFGKTKVHV+GCMFYG+ EP  PC CPLKQAWGSLDALIGRLRAAYEE+GGSPE+NPF
Sbjct: 71  LDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPF 130

Query: 127 ASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157
           ASASIRVYLREVRECQAKARGIPYKKKKK   Q
Sbjct: 131 ASASIRVYLREVRECQAKARGIPYKKKKKSNKQ 163

[Close]

BLAST of Csor.00g104060 vs. ExPASy TrEMBL
Match: A0A5D3C0I4 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00410 PE=3 SV=1)

HSP 1 Score: 270 bits (691), Expect = 2.52e-90
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 7   SSKEYREGSSSSAPT--TPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRY 66
           SSKEY EGSS+S PT  TPSRYESQKRRDWNT+GQYL NQRPPVA+SQ NFNHVLEFLRY
Sbjct: 11  SSKEYGEGSSNSPPTATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLRY 70

Query: 67  LDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPF 126
           LDQFGKTKVHV+GCMFYG+ EP  PC CPLKQAWGSLDALIGRLRAAYEE+GGSPE+NPF
Sbjct: 71  LDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNPF 130

Query: 127 ASASIRVYLREVRECQAKARGIPYKKKKKKTNQ 157
           ASASIRVYLREVRECQAKARGIPYKKKKK   Q
Sbjct: 131 ASASIRVYLREVRECQAKARGIPYKKKKKSNKQ 163

[Close]

BLAST of Csor.00g104060 vs. ExPASy TrEMBL
Match: A0A5A7V919 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005640 PE=3 SV=1)

HSP 1 Score: 270 bits (691), Expect = 2.79e-90
Identity = 133/151 (88.08%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 7   SSKEYREGSSSSAPT---TPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLR 66
           SSKEY EGSS+S PT   TPSRYESQKRRDWNT+GQYL NQRPPVA+SQ NFNHVLEFLR
Sbjct: 11  SSKEYGEGSSNSPPTAATTPSRYESQKRRDWNTFGQYLKNQRPPVALSQCNFNHVLEFLR 70

Query: 67  YLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNP 126
           YLDQFGKTKVHV+GCMFYG+ EP  PC CPLKQAWGSLDALIGRLRAAYEE+GGSPE+NP
Sbjct: 71  YLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLKQAWGSLDALIGRLRAAYEENGGSPETNP 130

Query: 127 FASASIRVYLREVRECQAKARGIPYKKKKKK 154
           FASASIRVYLREVRECQAKARGIPYKKKKKK
Sbjct: 131 FASASIRVYLREVRECQAKARGIPYKKKKKK 161

[Close]

BLAST of Csor.00g104060 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 243.8 bits (621), Expect = 9.1e-65
Identity = 119/154 (77.27%), Postives = 128/154 (83.12%), Query Frame = 0


Query: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60
           MS      K   E S S  P TPSRYESQKRRDWNT+GQYL NQRPPV +S  + NHVL+
Sbjct: 1   MSSPRERGKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLD 60

Query: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120
           FLRYLDQFGKTKVHV GCMFYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GG PE
Sbjct: 61  FLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPE 120

Query: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKK 155
           +NPFAS +IRVYLREVRECQAKARGIPYKKKKKK
Sbjct: 121 TNPFASGAIRVYLREVRECQAKARGIPYKKKKKK 154

[Close]

BLAST of Csor.00g104060 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 243.8 bits (621), Expect = 9.1e-65
Identity = 119/154 (77.27%), Postives = 128/154 (83.12%), Query Frame = 0


Query: 1   MSGGGGSSKEYREGSSSSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLE 60
           MS      K   E S S  P TPSRYESQKRRDWNT+GQYL NQRPPV +S  + NHVL+
Sbjct: 1   MSSPRERGKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLD 60

Query: 61  FLRYLDQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPE 120
           FLRYLDQFGKTKVHV GCMFYG+ EP  PC CPL+QAWGSLDALIGRLRAAYEE+GG PE
Sbjct: 61  FLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPE 120

Query: 121 SNPFASASIRVYLREVRECQAKARGIPYKKKKKK 155
           +NPFAS +IRVYLREVRECQAKARGIPYKKKKKK
Sbjct: 121 TNPFASGAIRVYLREVRECQAKARGIPYKKKKKK 154

[Close]

BLAST of Csor.00g104060 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-57
Identity = 100/138 (72.46%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 17  SSAPTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVE 76
           SS P TPSRYESQKRRDWNT+ QYL N +PP+A+S+ +  HV+EFL+YLDQFGKTKVHV 
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 77  GCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREV 136
            C ++G  +P  PC CPLKQAWGSLDALIGRLRAAYEE+GG P+SNPFA+ ++R+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 137 RECQAKARGIPYKKKKKK 155
           RE QAKARGIPY+KKK+K
Sbjct: 143 RESQAKARGIPYEKKKRK 160

[Close]

BLAST of Csor.00g104060 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-57
Identity = 99/135 (73.33%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 20  PTTPSRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYLDQFGKTKVHVEGCM 79
           P   SRYESQKRRDWNT+ QYL NQ+PPV +SQ   NH+L+FL+YLDQFGKTKVH+ GC+
Sbjct: 35  PPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCV 94

Query: 80  FYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEHGGSPESNPFASASIRVYLREVREC 139
           F+G+ EPAG C CPLKQAWGSLDALIGRLRAA+EE+GG PE NPFA   IRV+LREVR+ 
Sbjct: 95  FFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDS 154

Query: 140 QAKARGIPYKKKKKK 155
           QAKARG+PYKK+KK+
Sbjct: 155 QAKARGVPYKKRKKR 169

[Close]

BLAST of Csor.00g104060 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 210.7 bits (535), Expect = 8.6e-55
Identity = 103/150 (68.67%), Postives = 123/150 (82.00%), Query Frame = 0


Query: 7   SSKEYREGSSSSAPTTP-SRYESQKRRDWNTYGQYLNNQRPPVAVSQSNFNHVLEFLRYL 66
           SS  + +      P  P SRYESQKRRDWNT+ QYL +Q PP+ +SQ ++ HVL FLRYL
Sbjct: 18  SSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYL 77

Query: 67  DQFGKTKVHVEGCMFYGEAEPAGPCGCPLKQAWGSLDALIGRLRAAYEEH-GGSPESNPF 126
           DQFGKTKVH + C+F+G+ +P GPC CPLKQAWGSLDALIGRLRAAYEEH GGSP++NPF
Sbjct: 78  DQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPF 137

Query: 127 ASASIRVYLREVRECQAKARGIPYKKKKKK 155
           A+ SIRV+LREVRE QAKARGIPY+KKK++
Sbjct: 138 ANGSIRVHLREVRESQAKARGIPYRKKKRR 167

The following BLAST results are available for this feature:

BLAST of Csor.00g104060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	1.3e-63	77.27	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9LMK2	5.8e-56	72.46	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9ZVA0	5.8e-56	73.33	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XED8	2.9e-55	70.14	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	2.9e-55	70.14	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]

BLAST of Csor.00g104060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944662.1	2.57e-110	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022986...	[more]
XP_038900865.1	9.52e-91	89.33	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]
XP_008448236.1	5.21e-90	86.93	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_0...	[more]
KAA0062179.1	5.77e-90	88.08	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa]	[more]
XP_022947237.1	6.75e-90	88.51	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata] >XP_022970...	[more]

BLAST of Csor.00g104060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6H9	1.24e-110	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FW75	1.24e-110	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A1S4DX19	2.52e-90	86.93	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3C0I4	2.52e-90	86.93	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7V919	2.79e-90	88.08	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]

BLAST of Csor.00g104060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	9.1e-65	77.27	Protein of unknown function (DUF640)	[more]
AT2G42610.2	9.1e-65	77.27	Protein of unknown function (DUF640)	[more]
AT1G07090.1	4.1e-57	72.46	Protein of unknown function (DUF640)	[more]
AT1G78815.1	4.1e-57	73.33	Protein of unknown function (DUF640)	[more]
AT4G18610.1	8.6e-55	68.67	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 15..138 e-value: 3.6E-62 score: 208.1
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 25..152 score: 72.650414
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR31165:SF10	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 10	coord: 13..156
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 13..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g104060.m01	Csor.00g104060.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus