Csor.00g101640 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g101640
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Protein transport protein Sec61 subunit beta
Location	Csor_Chr20: 2379103 .. 2379897 (+)
RNA-Seq Expression	Csor.00g101640
Synteny	Csor.00g101640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGGAGACGGCTGTGGGGGCGATTCTCGGCAGGCTAGGGCGCCACTGCTATGCGGTTTTGTGTTTAGGAGTGCTTCTTCTGACGGTTGCCGTCGTTCACTACGTCGGCGATGGAGAACCGACCGATCCTCGCGAGCGAAGCAAGCGCCGTCTTCGCACCTTGCATGGCGGCCGTGATCCGCCTCCGGTTTTCAATCGCGGTGTGTCGTAAACTGGAGCGCCCAGCGGTTAGGGCTGAATCCGATGCATTCGCTGCTTTTGTGATGATTTTGTAAAAGATTAATAAATAGTTGTAAATTACTTGCTTTCTTTCTTTCTAGATCTAAGCTTTTAGTAACATTATTATATATTTTATTTCGGTTATGTGAATTTACGAAAATAGCCCCGATGTAAGGGAAGCCATTTGGGGGTCTTCTCTGTTTGTCTCTCATTTTCCCCCCAAATCCACCTGATTCCGATCTTCCTCTCCGATTCTCAATCCCAATCCGCATCCTCCTCCACCTCCAGACGTGGCGTCGTCGCTCCTCGCGGCTCTGCGGCCGCGACGGCTGGCCTTCGACGTCGCCGTCTCGGCTCCACTTCTGCTGCCGGCTCTACTGGACTCGTTGGCGGTGGATCAAGCGGCGGCGGCGGCGGCAACAACATGTTGAGGTTCTACACCGATGTTGCTCCAGGCTTGAAGATTTCTCCCACCGTCGTCCTCGTTTTGAGCATCTGCTTCATCGATTTCATCACCGTCCTCCACGTCTTTGGTAAGCTCTACCGCGCGAGATCCGCGGCTGGAGTTTAA

mRNA sequence

ATGGAGATGGAGACGGCTGTGGGGGCGATTCTCGGCAGGCTAGGGCGCCACTGCTATGCGGTTTTGTGTTTAGGAGTGCTTCTTCTGACGGTTGCCGTCGTTCACTACGTCGGCGATGGAGAACCGACCGATCCTCGCGAGCGAAGCAAGCGCCGTCTTCGCACCTTGCATGGCGGCCGTGATCCGCCTCCGCCCCGATGTAAGGGAAGCCATTTGGGGGTCTTCTCTGTTTGTCTCTCATTTTCCCCCCAAATCCACCTGATTCCGATCTTCCTCTCCGATTCTCAATCCCAATCCGCATCCTCCTCCACCTCCAGACGTGGCGTCGTCGCTCCTCGCGGCTCTGCGGCCGCGACGGCTGGCCTTCGACGTCGCCGTCTCGGCTCCACTTCTGCTGCCGGCTCTACTGGACTCGTTGGCGGTGGATCAAGCGGCGGCGGCGGCGGCAACAACATGTTGAGGTTCTACACCGATGTTGCTCCAGGCTTGAAGATTTCTCCCACCGTCGTCCTCGTTTTGAGCATCTGCTTCATCGATTTCATCACCGTCCTCCACGTCTTTGGTAAGCTCTACCGCGCGAGATCCGCGGCTGGAGTTTAA

Coding sequence (CDS)

ATGGAGATGGAGACGGCTGTGGGGGCGATTCTCGGCAGGCTAGGGCGCCACTGCTATGCGGTTTTGTGTTTAGGAGTGCTTCTTCTGACGGTTGCCGTCGTTCACTACGTCGGCGATGGAGAACCGACCGATCCTCGCGAGCGAAGCAAGCGCCGTCTTCGCACCTTGCATGGCGGCCGTGATCCGCCTCCGCCCCGATGTAAGGGAAGCCATTTGGGGGTCTTCTCTGTTTGTCTCTCATTTTCCCCCCAAATCCACCTGATTCCGATCTTCCTCTCCGATTCTCAATCCCAATCCGCATCCTCCTCCACCTCCAGACGTGGCGTCGTCGCTCCTCGCGGCTCTGCGGCCGCGACGGCTGGCCTTCGACGTCGCCGTCTCGGCTCCACTTCTGCTGCCGGCTCTACTGGACTCGTTGGCGGTGGATCAAGCGGCGGCGGCGGCGGCAACAACATGTTGAGGTTCTACACCGATGTTGCTCCAGGCTTGAAGATTTCTCCCACCGTCGTCCTCGTTTTGAGCATCTGCTTCATCGATTTCATCACCGTCCTCCACGTCTTTGGTAAGCTCTACCGCGCGAGATCCGCGGCTGGAGTTTAA

Protein sequence

MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGRDPPPPRCKGSHLGVFSVCLSFSPQIHLIPIFLSDSQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV

Homology

[Close]

BLAST of Csor.00g101640 vs. ExPASy Swiss-Prot
Match: P38389 (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.3e-14
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 113 RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLV 172
           RGSAAATA +RRR+   TS AG     GGG+SGG  G +ML+FYTD APGLKISP VVL+
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAG-SMLQFYTDDAPGLKISPNVVLI 68

Query: 173 LSICFIDFITVLHVFGKLY 192
           +SI FI F+ VLHV GKLY
Sbjct: 69  MSIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of Csor.00g101640 vs. ExPASy Swiss-Prot
Match: Q54YR4 (Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum OX=44689 GN=sec61b PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 23/46 (50.00%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 148 GGNNMLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRA 194
           GGN+M++FY++ A GLK+ PT VL +S+ FI F+ +LH+ GK  R+
Sbjct: 16  GGNSMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKYTRS 61

[Close]

BLAST of Csor.00g101640 vs. ExPASy Swiss-Prot
Match: A8I6P9 (Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=3055 GN=SEC61B PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 92  LSDSQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNN 151
           ++ SQSQ AS+  +R G  +      A   LRRR +  +  +G+T               
Sbjct: 1   MAGSQSQ-ASTLVARGGRSSSNAPTGAAGALRRRPVRGSGGSGTT----------KAQQA 60

Query: 152 MLRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGK 190
            + FYTD  PG K+SP VV+ +S+ FI F+T+LHV GK
Sbjct: 61  AMNFYTDDTPGWKMSPVVVITMSLSFIAFVTILHVVGK 87

[Close]

BLAST of Csor.00g101640 vs. NCBI nr
Match: KAG6570773.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 379 bits (974), Expect = 2.05e-132
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 1   MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR 60
           MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR
Sbjct: 1   MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR 60

Query: 61  DPPPPRCKGSHLGVFSVCLSFSPQIHLIPIFLSDSQSQSASSSTSRRGVVAPRGSAAATA 120
           DPPPPRCKGSHLGVFSVCLSFSPQIHLIPIFLSDSQSQSASSSTSRRGVVAPRGSAAATA
Sbjct: 61  DPPPPRCKGSHLGVFSVCLSFSPQIHLIPIFLSDSQSQSASSSTSRRGVVAPRGSAAATA 120

Query: 121 GLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDF 180
           GLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDF
Sbjct: 121 GLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDF 180

Query: 181 ITVLHVFGKLYRARSAAGV 199
           ITVLHVFGKLYRARSAAGV
Sbjct: 181 ITVLHVFGKLYRARSAAGV 199

[Close]

BLAST of Csor.00g101640 vs. NCBI nr
Match: KAG7010620.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283 bits (724), Expect = 7.62e-95
Identity = 160/199 (80.40%), Postives = 162/199 (81.41%), Query Frame = 0


Query: 1   MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR 60
           MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR
Sbjct: 1   MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR 60

Query: 61  DPPPPRCKGSHLGVFSVCLSFSPQIHLIPIFLSDSQSQSASSSTSRRGVVAPRGSAAATA 120
           DPPP         VF+  +S                          RGVVAPRGSAAATA
Sbjct: 61  DPPP---------VFNRGVS--------------------------RGVVAPRGSAAATA 120

Query: 121 GLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDF 180
           GLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDF
Sbjct: 121 GLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLVLSICFIDF 164

Query: 181 ITVLHVFGKLYRARSAAGV 199
           ITVLHVFGKLYRARSAAGV
Sbjct: 181 ITVLHVFGKLYRARSAAGV 164

[Close]

BLAST of Csor.00g101640 vs. NCBI nr
Match: XP_022958107.1 (protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532.1 protein transport protein Sec61 subunit beta [Cucurbita maxima] >XP_023534505.1 protein transport protein Sec61 subunit beta [Cucurbita pepo subsp. pepo] >KAG7013903.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158 bits (399), Expect = 3.19e-46
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 95  SQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLR 154
           SQSQSASSSTSR GVVAPRGSAAATAGLRRRRLGSTS AG+TGLV GGSSGGG   NMLR
Sbjct: 6   SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGG---NMLR 65

Query: 155 FYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV 199
           FYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Sbjct: 66  FYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of Csor.00g101640 vs. NCBI nr
Match: XP_038902812.1 (protein transport protein Sec61 subunit beta [Benincasa hispida])

HSP 1 Score: 157 bits (396), Expect = 9.09e-46
Identity = 92/105 (87.62%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 95  SQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLR 154
           SQSQS SSSTSR GVVAPRGSAAATAGLRRRR GSTSAA STGLVGGGSSGGG   NMLR
Sbjct: 6   SQSQSTSSSTSRPGVVAPRGSAAATAGLRRRRPGSTSAAASTGLVGGGSSGGG---NMLR 65

Query: 155 FYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV 199
           FYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Sbjct: 66  FYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of Csor.00g101640 vs. NCBI nr
Match: XP_004149541.1 (protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypothetical protein Csa_023023 [Cucumis sativus])

HSP 1 Score: 151 bits (382), Expect = 1.28e-43
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 93  SDSQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNM 152
           S SQS ++S ST+R GVVAPRGSAAATAGLRRRR GSTSA+ STGLVGGGSSGGG   NM
Sbjct: 6   SQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG---NM 65

Query: 153 LRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV 199
           LRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Sbjct: 66  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of Csor.00g101640 vs. ExPASy TrEMBL
Match: A0A6J1JZ65 (Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111491039 PE=3 SV=1)

HSP 1 Score: 158 bits (399), Expect = 1.54e-46
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 95  SQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLR 154
           SQSQSASSSTSR GVVAPRGSAAATAGLRRRRLGSTS AG+TGLV GGSSGGG   NMLR
Sbjct: 6   SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGG---NMLR 65

Query: 155 FYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV 199
           FYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Sbjct: 66  FYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of Csor.00g101640 vs. ExPASy TrEMBL
Match: A0A6J1H102 (Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111459432 PE=3 SV=1)

HSP 1 Score: 158 bits (399), Expect = 1.54e-46
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 95  SQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLR 154
           SQSQSASSSTSR GVVAPRGSAAATAGLRRRRLGSTS AG+TGLV GGSSGGG   NMLR
Sbjct: 6   SQSQSASSSTSRPGVVAPRGSAAATAGLRRRRLGSTSGAGTTGLVSGGSSGGG---NMLR 65

Query: 155 FYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV 199
           FYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Sbjct: 66  FYTDDAPGLKISPTVVLVVSLCFIGFVTGLHVFGKLYRARSAAGV 107

[Close]

BLAST of Csor.00g101640 vs. ExPASy TrEMBL
Match: A0A0A0KHR1 (Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6G293930 PE=3 SV=1)

HSP 1 Score: 151 bits (382), Expect = 6.22e-44
Identity = 88/107 (82.24%), Postives = 95/107 (88.79%), Query Frame = 0


Query: 93  SDSQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNM 152
           S SQS ++S ST+R GVVAPRGSAAATAGLRRRR GSTSA+ STGLVGGGSSGGG   NM
Sbjct: 6   SQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSASASTGLVGGGSSGGG---NM 65

Query: 153 LRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV 199
           LRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Sbjct: 66  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of Csor.00g101640 vs. ExPASy TrEMBL
Match: A0A5D3CTD4 (Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00270 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 8.82e-44
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 93  SDSQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNM 152
           S SQS ++S ST+R GVVAPRGSAAATAGLRRRR GSTSA  STGLVGGGSSGGG   NM
Sbjct: 6   SQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG---NM 65

Query: 153 LRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV 199
           LRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Sbjct: 66  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of Csor.00g101640 vs. ExPASy TrEMBL
Match: A0A1S3CKE5 (Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC103501938 PE=3 SV=1)

HSP 1 Score: 151 bits (381), Expect = 8.82e-44
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 93  SDSQSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNM 152
           S SQS ++S ST+R GVVAPRGSAAATAGLRRRR GSTSA  STGLVGGGSSGGG   NM
Sbjct: 6   SQSQSSTSSGSTARPGVVAPRGSAAATAGLRRRRPGSTSATASTGLVGGGSSGGG---NM 65

Query: 153 LRFYTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAAGV 199
           LRFYTD APGLKISPTVVLV+S+CFI F+T LHVFGKLYRARSAAGV
Sbjct: 66  LRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSAAGV 109

[Close]

BLAST of Csor.00g101640 vs. TAIR 10
Match: AT5G60460.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-26
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 96  QSQSASSSTSRRGVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRF 155
           QS S  SST+R G+ APRGSAAATAG+RRRRLG      S    GGGS  G G +NMLRF
Sbjct: 10  QSTSTGSSTARPGLAAPRGSAAATAGMRRRRLGGGGGVSS----GGGSGVGSGSSNMLRF 69

Query: 156 YTDVAPGLKISPTVVLVLSICFIDFITVLHVFGKLYRARSAA 198
           YTD APGLKISPTVVL++S+CFI F+T LHVFGKLY  +S +
Sbjct: 70  YTDDAPGLKISPTVVLIMSLCFIGFVTALHVFGKLYLHKSGS 107

[Close]

BLAST of Csor.00g101640 vs. TAIR 10
Match: AT3G60540.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-16
Identity = 50/88 (56.82%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 108 GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISP 167
           G    RGSAAATA +RRR+             GG SS GGG   ML+FYTD APGLKISP
Sbjct: 4   GGAPQRGSAAATASMRRRK-----------PAGGSSSAGGGAGTMLQFYTDDAPGLKISP 63

Query: 168 TVVLVLSICFIDFITVLHVFGKLYRARS 196
            VVL++SI FI F+ VLHV GKLY  +S
Sbjct: 64  NVVLIMSIGFIAFVAVLHVMGKLYFVKS 80

[Close]

BLAST of Csor.00g101640 vs. TAIR 10
Match: AT3G60540.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 81.6 bits (200), Expect = 7.6e-16
Identity = 50/88 (56.82%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 108 GVVAPRGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISP 167
           G    RGSAAATA +RRR+             GG SS GGG   ML+FYTD APGLKISP
Sbjct: 4   GGAPQRGSAAATASMRRRK-----------PAGGSSSAGGGAGTMLQFYTDDAPGLKISP 63

Query: 168 TVVLVLSICFIDFITVLHVFGKLYRARS 196
            VVL++SI FI F+ VLHV GKLY  +S
Sbjct: 64  NVVLIMSIGFIAFVAVLHVMGKLYFVKS 80

[Close]

BLAST of Csor.00g101640 vs. TAIR 10
Match: AT2G45070.1 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-15
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 113 RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLV 172
           RGSAAATA +RRR+   TS AG     GGG+SGG  G +ML+FYTD APGLKISP VVL+
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAG-SMLQFYTDDAPGLKISPNVVLI 68

Query: 173 LSICFIDFITVLHVFGKLY 192
           +SI FI F+ VLHV GKLY
Sbjct: 69  MSIGFIAFVAVLHVMGKLY 79

[Close]

BLAST of Csor.00g101640 vs. TAIR 10
Match: AT2G45070.2 (Preprotein translocase Sec, Sec61-beta subunit protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-15
Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 113 RGSAAATAGLRRRRLGSTSAAGSTGLVGGGSSGGGGGNNMLRFYTDVAPGLKISPTVVLV 172
           RGSAAATA +RRR+   TS AG     GGG+SGG  G +ML+FYTD APGLKISP VVL+
Sbjct: 9   RGSAAATASMRRRK--PTSGAG-----GGGASGGAAG-SMLQFYTDDAPGLKISPNVVLI 68

Query: 173 LSICFIDFITVLHVFGKLY 192
           +SI FI F+ VLHV GKLY
Sbjct: 69  MSIGFIAFVAVLHVMGKLY 79

The following BLAST results are available for this feature:

BLAST of Csor.00g101640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38389	5.3e-14	65.82	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q54YR4	1.8e-06	50.00	Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum OX=4468...	[more]
A8I6P9	1.0e-04	36.73	Protein transport protein Sec61 subunit beta OS=Chlamydomonas reinhardtii OX=305...	[more]

BLAST of Csor.00g101640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570773.1	2.05e-132	100.00	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
KAG7010620.1	7.62e-95	80.40	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
XP_022958107.1	3.19e-46	87.62	protein transport protein Sec61 subunit beta [Cucurbita moschata] >XP_022995532....	[more]
XP_038902812.1	9.09e-46	87.62	protein transport protein Sec61 subunit beta [Benincasa hispida]	[more]
XP_004149541.1	1.28e-43	82.24	protein transport protein Sec61 subunit beta [Cucumis sativus] >KGN47316.1 hypot...	[more]

BLAST of Csor.00g101640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ65	1.54e-46	87.62	Protein transport protein Sec61 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H102	1.54e-46	87.62	Protein transport protein Sec61 subunit beta OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0KHR1	6.22e-44	82.24	Protein transport protein Sec61 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_6...	[more]
A0A5D3CTD4	8.82e-44	82.24	Protein transport protein Sec61 subunit beta OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CKE5	8.82e-44	82.24	Protein transport protein Sec61 subunit beta OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of Csor.00g101640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60460.1	2.8e-26	65.69	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT3G60540.1	7.6e-16	56.82	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT3G60540.2	7.6e-16	56.82	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.1	3.8e-15	65.82	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT2G45070.2	3.8e-15	65.82	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 149..188 e-value: 5.5E-15 score: 55.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..67
None	No IPR available	PANTHER	PTHR13509:SF14	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA	coord: 95..196
IPR030671	Protein transport Sec61-beta/Sbh	PANTHER	PTHR13509	SEC61 SUBUNIT BETA	coord: 95..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g101640.m01	Csor.00g101640.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005784	Sec61 translocon complex