Csor.00g097000 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g097000
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	33 kDa ribonucleoprotein, chloroplastic
Location	Csor_Chr14: 1684648 .. 1686761 (-)
RNA-Seq Expression	Csor.00g097000
Synteny	Csor.00g097000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCCTGCAAGAAACTCTTCTTCGCCCAACATCTCAACCGAATTCCCTCCCATTTTTCTCCAAAACAGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACATTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAAGGACTCGAAGTCTCCGACCCTATAACAGAAGACGCAGAGACTGAAGAATCGGACGGAGGCGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTTGTGATTGATCTAGCTTCTTTTTGTTTTACCTTTATCCGTCTGAATCCATTTTTCTAGGGCTTATTGGAGCTGCTTAGCCATTGTTGGTTTCTTATGTGATTTTCTTCCGGATCTTCTGTTAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTGTAACTACTTCTTATTCTTTCTCTCTTCATTTCATTTTGTCTTCGCTTAACAATTGTGGTGGAAACTAGGGATGGATATCCAGTTTGTTCAGCTTAACTTACTGATGGTTGCTGATTGATAACACCTTAAAGCTGAATCTTGCTGAGAGAAAAAAGTTGCCTCTATAAAACACTAACTTAAGTACATCATTCTCAATGAAACAAAACTTTGGAGAAAGTCCAAACCTGTAGGCAAGTTCTAATGTTTGGGTGTAACGTCTGATAAATGTAAAATGATGGTAGTGCTTTTCCATTGATTGAATGGAAGCACCTGCATCTAGTGTTGGCATGGTTGGTGTCTTTGTGGGATTAGATGATATAATGGTAGAGTTAGATTTTAACAGCCGAAGCCCACCACTAGCAGATATTGTTCTCTTTGGGTTTTTCCTTTCGAGTTTCCCTCAAAGTTTTTAAAATGCGTTTGTTAGGAAGAGGTTTCCACACCCTTATAAAGAATGTTTCATTTCCCTCTCCAAGCGATTTGGGATCTCACAATCCACTCTCTTCGGAGCCACTCATTGACATTCGTTATCTCACATAGTCATTAGTGTAAGACATTGAAGGGTGTGGATGATTCTAATGCAGTAGAGTTTACAAATGCTTGGTCCTCTAATAGTTTAGACACCACATTATGATATCTCTAAATGATTGAGTAATGTATTGATTGTTTGTTAGATATTTTTGCTATAAAGTTGCTAATGGATGAATTACTTGTCAGCTAATCGGAGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTGATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTCGTTGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGCCTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAATCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGTAAGAACGTGGAGTTACTTTTCAATATGATTCTAGAGATTAGACATGATGAACTTGTGACAGAATTTACTGATGTGATTGATCCTTAACTACATTAAAAGCTACCTCTAAATGGGCCGATGTTTACAACACATAAACCTAATCCAGAAATACATTAGTTTAGAAAAAGGCATGAGAAAATGTACCTGCATTTTGTACAATCATTCCTGTGTTATTGACTTCTTCCATGCAAATATGCTACCAGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGTATCAGTGCCTGA

mRNA sequence

ATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCCTGCAAGAAACTCTTCTTCGCCCAACATCTCAACCGAATTCCCTCCCATTTTTCTCCAAAACAGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACATTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAAGGACTCGAAGTCTCCGACCCTATAACAGAAGACGCAGAGACTGAAGAATCGGACGGAGGCGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTCTAATCGGAGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTGATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTCGTTGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGCCTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAATCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGTATCAGTGCCTGA

Coding sequence (CDS)

ATGTCAGCTTCTTCTCTCACAATGGCTGCTGCTGCAGCTTCAGTTTCGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCCTGCAAGAAACTCTTCTTCGCCCAACATCTCAACCGAATTCCCTCCCATTTTTCTCCAAAACAGAAGCCATTGAAGCTTCTCGAGCTCAGAATCCATTTACCCAACATTTACCCTCTTGCTTTCTCCTCCGCTTCTCATCTCTACTGTGCTCCTCCTGCATTCGAAGGACTCGAAGTCTCCGACCCTATAACAGAAGACGCAGAGACTGAAGAATCGGACGGAGGCGAAGAAAGCCGGGAGGAAGACGAACAAAAGGTATCGGCATCTCGCGACGCAGGGAAGCTTTATATTGGAAATTTACCATATGCTATGACCTCTTCCCAATTGACTGAGGTCTTCGCCGAAGCCGGTCATGTGGTTTCTGTACAGGTTATATATGACAAAGTTACGGATAGGAGTAGGGGATTTGCATTTGTGACAATGGCAACTTTGGAGGAAGCTAAAGAAGCAATTCGGATGTTTGACGGCTCTCTAATCGGAGGGCGAACTGTTCGGGTGAACTTCCCTGAAGTTCCAAGGGGAGGAGAAAAGGAAGTGATGGGGCCAAAGATAAGAAGCAGCTATAACAAATTCGTTGATAGTCCTCACAAGATATATGCAGGTAACCTTGGTTGGGGCCTTACTTCTCAGAGTCTTAGAGAGGCTTTTGAAAACCAACCAGGGATATTGAGTGCCAAGGTCATCTATGATAGGGAATCTGGAAGAAGTCGAGGTTTTGGATTTGTATCTTTTGAAACTGCTGAGGATGCAGAGTCTGCTTTGGATTCCATGAACGGAGTGGAAGTTGAAGGGCGACCACTTCGTTTGAACATGGCTGCAGACCGGGCCCCAACTTCTCCAGCAGCATTCACAAGGACTGAGAATACCATCGACAGCAATGAATTGCTTACAAGTATCAGTGCCTGA

Protein sequence

MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAPTSPAAFTRTENTIDSNELLTSISA

Homology

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BLAST of Csor.00g097000 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.3e-81
Identity = 176/321 (54.83%), Postives = 229/321 (71.34%), Query Frame = 0


Query: 12  AASVSSSSSSSSSSSPCKKLFFAQH--LNRIPSHFSPKQKPLKLLELRIHLPNIYPLAFS 71
           AA+ S+SS+S       K  F   H  L+   +HF+ K   +   +L+ H P I  L  S
Sbjct: 9   AATASTSSTSLLYLFTQKPKFSVDHLSLSTYNTHFNFK---INSTKLKAHFP-ISSLYRS 68

Query: 72  SASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAGKLYIGNLPY 131
           S     CA  + +G+EV     E+     ++  EE  E++E+  S S + G+LY+GNLP+
Sbjct: 69  SIFLSTCASVS-DGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPF 128

Query: 132 AMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGR 191
           +MTSSQL+E+FAEAG V +V+++YD+VTDRSRGFAFVTM ++EEAKEAIR+FDGS +GGR
Sbjct: 129 SMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGR 188

Query: 192 TVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGI 251
           TV+VNFPEVPRGGE+EVM  KIRS+Y  FVDSPHK+Y  NL W LTSQ LR+AF +QPG 
Sbjct: 189 TVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGF 248

Query: 252 LSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAPTS--P 311
           +SAKVIYDR SGRSRGFGF++F +AE   SALD+MN VE+EGRPLRLN+A  +AP S  P
Sbjct: 249 MSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPP 308

Query: 312 AAFTRTENTIDSNELLTSISA 329
              T  EN  D++ELL+S+S+
Sbjct: 309 VVETSPENDSDNSELLSSLSS 324

[Close]

BLAST of Csor.00g097000 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.7e-78
Identity = 168/336 (50.00%), Postives = 232/336 (69.05%), Query Frame = 0


Query: 3   ASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHLPN 62
           +S+   +A A S ++++SS+++ +P   L  +   +++   F+PK       +L  + PN
Sbjct: 2   SSAYCSSAVAVSAAATASSAATFNP---LLSSHSNSQLFYRFTPKS-----FKLVANCPN 61

Query: 63  IYPLAFSSASHLYCAPPAFEGLEVSDPI-----TEDAETEESDGGEESREEDEQKVSASR 122
              L  +   H +      E     D I      E+   EE D GEE  EE++Q   AS 
Sbjct: 62  PLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG 121

Query: 123 DAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA 182
           + G+LY+GNLPY +TSS+L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA
Sbjct: 122 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 181

Query: 183 IRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQ 242
           ++MF+ S IGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTSQ
Sbjct: 182 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQ 241

Query: 243 SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN 302
            L++AF +QPG+L AKVIY+R +GRSRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN
Sbjct: 242 GLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLN 301

Query: 303 MAADR-----APTSPAAFTRTENTIDSNELLTSISA 329
           +A++R     +P S       E +++SNE+L+++SA
Sbjct: 302 LASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

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BLAST of Csor.00g097000 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-41
Identity = 85/199 (42.71%), Postives = 129/199 (64.82%), Query Frame = 0


Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KL++GNLP+++ S+ L  +F  AG+V  V+VIYDK++ RSRGF FVTM+T EE + A + 
Sbjct: 89  KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148

Query: 181 FDGSLIGGRTVRVNFPEVP-----------RGGEKEVMGPKIRSSY------NKFVDSPH 240
           F+G  I GR +RVN    P           RGG     G +  +S        + VDS +
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSN 208

Query: 241 KIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDS 300
           ++Y GNL WG+   +L+E F  Q  ++ AKV+YDR+SGRSRGFGFV++ +A++   A+DS
Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDS 268

Query: 301 MNGVEVEGRPLRLNMAADR 303
           +NG++++GR +R++ A +R
Sbjct: 269 LNGIDLDGRSIRVSAAEER 287

[Close]

BLAST of Csor.00g097000 vs. ExPASy Swiss-Prot
Match: Q08937 (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.4e-40
Identity = 94/239 (39.33%), Postives = 142/239 (59.41%), Query Frame = 0


Query: 83  GLEVSDPITEDAETEESDGGEESREEDEQKVSASR--DAGKLYIGNLPYAMTSSQLTEVF 142
           GL    P      T  +  G +  E+D +     R  +  KL++GNLP+++ S+ L  +F
Sbjct: 48  GLCSIKPFESSFSTRVALSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLF 107

Query: 143 AEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVP- 202
             AG+V  V+VIYDK+T RSRGF FVTM+T EE + A + F+G  I GR +RVN    P 
Sbjct: 108 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPA 167

Query: 203 ----------RGGEKEVMGPKIRSSY------NKFVDSPHKIYAGNLGWGLTSQSLREAF 262
                     RGG     G +  +S        + VDS +++Y GNL WG+   +L+E F
Sbjct: 168 KRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELF 227

Query: 263 ENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADR 303
             Q  ++ AKV+YDR+SGRSRGFGFV++ ++++   A+DS+NGV+++GR +R++ A +R
Sbjct: 228 SEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286

[Close]

BLAST of Csor.00g097000 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 3.9e-38
Identity = 93/258 (36.05%), Postives = 151/258 (58.53%), Query Frame = 0


Query: 60  LPNIYPLAFSSASHLYCAPPAFEGLEVSD-------------PITEDAETEESDGGEESR 119
           LP   P + +++   +  PP+   L +S               +++  + E+ + G++  
Sbjct: 18  LPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFDQIEDVEDGDDGV 77

Query: 120 EEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFV 179
           EE+    + S D  K+++GNLP++  S+ L E+F  AG+V  V+VIYDK+T RSRGF FV
Sbjct: 78  EEER---NFSPDL-KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFV 137

Query: 180 TMATLEEAKEAIRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIY 239
           TM++ EE + A + F+G  + GR +RVN    P   E        R   +   DS +++Y
Sbjct: 138 TMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGS--FDSSNRVY 197

Query: 240 AGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNG 299
            GNL WG+   +L   F  Q  ++ AKV+YDR+SGRSRGFGFV++ +AE+  +A++S++G
Sbjct: 198 VGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257

Query: 300 VEVEGRPLRLNMAADRAP 305
           V++ GR +R++ A  R P
Sbjct: 258 VDLNGRAIRVSPAEARPP 269

[Close]

BLAST of Csor.00g097000 vs. NCBI nr
Match: KAG6580756.1 (hypothetical protein SDJN03_20758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 619 bits (1596), Expect = 6.47e-223
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL 60

Query: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120
           PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG
Sbjct: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328
           DRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]

BLAST of Csor.00g097000 vs. NCBI nr
Match: XP_022934919.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022934920.1 33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 611 bits (1576), Expect = 6.96e-220
Identity = 326/328 (99.39%), Postives = 326/328 (99.39%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSS SSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSS-SSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL 60

Query: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120
           PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDG EESREEDEQKVSASRDAG
Sbjct: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328
           DRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 327

[Close]

BLAST of Csor.00g097000 vs. NCBI nr
Match: XP_023527627.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 611 bits (1576), Expect = 8.08e-220
Identity = 327/331 (98.79%), Postives = 327/331 (98.79%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSS---PCKKLFFAQHLNRIPSHFSPKQKPLKLLELR 60
           MSASSLTMAAAAASVSSSSSSSSSSS   PCKKLFFAQHLNRIPSHFSPKQKPLKLLELR
Sbjct: 1   MSASSLTMAAAAASVSSSSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELR 60

Query: 61  IHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASR 120
           IHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDG EESREEDEQKVSASR
Sbjct: 61  IHLPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASR 120

Query: 121 DAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA 180
           DAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA
Sbjct: 121 DAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA 180

Query: 181 IRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQ 240
           IRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQ
Sbjct: 181 IRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQ 240

Query: 241 SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN 300
           SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN
Sbjct: 241 SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN 300

Query: 301 MAADRAPTSPAAFTRTENTIDSNELLTSISA 328
           MAADRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 MAADRAPTSPAAFTRTENTIDSNELLTSISA 331

[Close]

BLAST of Csor.00g097000 vs. NCBI nr
Match: KAG7017509.1 (hypothetical protein SDJN02_19374 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 610 bits (1574), Expect = 1.40e-219
Identity = 326/328 (99.39%), Postives = 326/328 (99.39%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSS SSSSPCKKLFFAQHLNRIPS FSPKQKPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSS-SSSSPCKKLFFAQHLNRIPSRFSPKQKPLKLLELRIHL 60

Query: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120
           PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG
Sbjct: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328
           DRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 327

[Close]

BLAST of Csor.00g097000 vs. NCBI nr
Match: XP_022983024.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 591 bits (1523), Expect = 8.62e-212
Identity = 319/329 (96.96%), Postives = 321/329 (97.57%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHL-NRIPSHFSPKQKPLKLLELRIH 60
           MSASSLTMAAAAASVSSSSSS SSSSPCKKLFF   L NRIPSHFSPK KPLKLLELRIH
Sbjct: 1   MSASSLTMAAAAASVSSSSSS-SSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIH 60

Query: 61  LPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDA 120
           LPN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSASRDA
Sbjct: 61  LPNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDA 120

Query: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180
           GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR
Sbjct: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180

Query: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240
           MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL
Sbjct: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240

Query: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300
           REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA
Sbjct: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300

Query: 301 ADRAPTSPAAFTRTENTIDSNELLTSISA 328
           ADRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 ADRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]

BLAST of Csor.00g097000 vs. ExPASy TrEMBL
Match: A0A6J1F948 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441950 PE=4 SV=1)

HSP 1 Score: 611 bits (1576), Expect = 3.37e-220
Identity = 326/328 (99.39%), Postives = 326/328 (99.39%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL 60
           MSASSLTMAAAAASVSSSSSS SSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL
Sbjct: 1   MSASSLTMAAAAASVSSSSSS-SSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHL 60

Query: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDAG 120
           PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDG EESREEDEQKVSASRDAG
Sbjct: 61  PNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGSEESREEDEQKVSASRDAG 120

Query: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180
           KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM
Sbjct: 121 KLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 180

Query: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240
           FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR
Sbjct: 181 FDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSLR 240

Query: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300
           EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA
Sbjct: 241 EAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAA 300

Query: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 328
           DRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 DRAPTSPAAFTRTENTIDSNELLTSISA 327

[Close]

BLAST of Csor.00g097000 vs. ExPASy TrEMBL
Match: A0A6J1J651 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481694 PE=4 SV=1)

HSP 1 Score: 591 bits (1523), Expect = 4.17e-212
Identity = 319/329 (96.96%), Postives = 321/329 (97.57%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHL-NRIPSHFSPKQKPLKLLELRIH 60
           MSASSLTMAAAAASVSSSSSS SSSSPCKKLFF   L NRIPSHFSPK KPLKLLELRIH
Sbjct: 1   MSASSLTMAAAAASVSSSSSS-SSSSPCKKLFFFTQLPNRIPSHFSPKPKPLKLLELRIH 60

Query: 61  LPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDA 120
           LPN YPLAFSSASHLYCAPPAFEGLEVSDPI+E+AETEESDG EESREEDEQKVSASRDA
Sbjct: 61  LPNFYPLAFSSASHLYCAPPAFEGLEVSDPISENAETEESDGKEESREEDEQKVSASRDA 120

Query: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180
           GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR
Sbjct: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180

Query: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240
           MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL
Sbjct: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240

Query: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300
           REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA
Sbjct: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300

Query: 301 ADRAPTSPAAFTRTENTIDSNELLTSISA 328
           ADRAPTSPAAFTRTENTIDSNELLTSISA
Sbjct: 301 ADRAPTSPAAFTRTENTIDSNELLTSISA 328

[Close]

BLAST of Csor.00g097000 vs. ExPASy TrEMBL
Match: A0A1S3B7N1 (33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 PE=4 SV=1)

HSP 1 Score: 513 bits (1322), Expect = 1.34e-181
Identity = 274/329 (83.28%), Postives = 293/329 (89.06%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPC-KKLFFAQHLNRIPSHFSPKQKPLKLLELRIH 60
           MSA SL  AAAAAS         SSSP  KK FF QH N+IPSHFSPK   LKLL L IH
Sbjct: 1   MSAYSLAAAAAAASA--------SSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIH 60

Query: 61  LPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDA 120
           LPN YPL+FSS SH++CAPPAF+ LE+SDP TE  + +ESDG E+++EEDEQK+S SR+A
Sbjct: 61  LPNFYPLSFSSVSHIHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREA 120

Query: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180
           GKLYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR
Sbjct: 121 GKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180

Query: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240
           MFDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL
Sbjct: 181 MFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240

Query: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300
           R+AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+A
Sbjct: 241 RDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 300

Query: 301 ADRAPTSPAAFTRTENTIDSNELLTSISA 328
           A+RAPTSPAAF RTENTIDS ELLTSISA
Sbjct: 301 AERAPTSPAAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of Csor.00g097000 vs. ExPASy TrEMBL
Match: A0A5D3DPZ1 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004690 PE=4 SV=1)

HSP 1 Score: 513 bits (1321), Expect = 1.90e-181
Identity = 274/329 (83.28%), Postives = 293/329 (89.06%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPC-KKLFFAQHLNRIPSHFSPKQKPLKLLELRIH 60
           MSA SL  AAAAAS         SSSP  KK FF QH N+IPSHFSPK   LKLL L IH
Sbjct: 1   MSAYSLAAAAAAASA--------SSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIH 60

Query: 61  LPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDA 120
           LPN YPL+FSS SH++CAPPAF+ LE+SDP TE  + +ESDG E+++EEDEQK+S SR+A
Sbjct: 61  LPNFYPLSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREA 120

Query: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180
           GKLYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR
Sbjct: 121 GKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180

Query: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240
           MFDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL
Sbjct: 181 MFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240

Query: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300
           R+AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+A
Sbjct: 241 RDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 300

Query: 301 ADRAPTSPAAFTRTENTIDSNELLTSISA 328
           A+RAPTSPAAF RTENTIDS ELLTSISA
Sbjct: 301 AERAPTSPAAFPRTENTIDSKELLTSISA 321

[Close]

BLAST of Csor.00g097000 vs. ExPASy TrEMBL
Match: A0A5A7TK11 (33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001350 PE=4 SV=1)

HSP 1 Score: 513 bits (1321), Expect = 1.04e-180
Identity = 274/329 (83.28%), Postives = 293/329 (89.06%), Query Frame = 0


Query: 1   MSASSLTMAAAAASVSSSSSSSSSSSPC-KKLFFAQHLNRIPSHFSPKQKPLKLLELRIH 60
           MSA SL  AAAAAS         SSSP  KK FF QH N+IPSHFSPK   LKLL L IH
Sbjct: 48  MSAYSLAAAAAAASA--------SSSPLYKKHFFTQHPNQIPSHFSPKHNKLKLLNLTIH 107

Query: 61  LPNIYPLAFSSASHLYCAPPAFEGLEVSDPITEDAETEESDGGEESREEDEQKVSASRDA 120
           LPN YPL+FSS SH++CAPPAF+ LE+SDP TE  + +ESDG E+++EEDEQK+S SR+A
Sbjct: 108 LPNFYPLSFSSVSHVHCAPPAFDELEISDPETEYGDVQESDGEEQTQEEDEQKISVSREA 167

Query: 121 GKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 180
           GKLYIGNLPYAMTSSQL+EVFAEAG VVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR
Sbjct: 168 GKLYIGNLPYAMTSSQLSEVFAEAGQVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIR 227

Query: 181 MFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 240
           MFDGS IGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL
Sbjct: 228 MFDGSQIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQSL 287

Query: 241 REAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMA 300
           R+AFENQPGILSAKVIYDR SG+SRGFGFVSFETAEDAESAL+SMNGVEVEGRPLRLN+A
Sbjct: 288 RDAFENQPGILSAKVIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPLRLNIA 347

Query: 301 ADRAPTSPAAFTRTENTIDSNELLTSISA 328
           A+RAPTSPAAF RTENTIDS ELLTSISA
Sbjct: 348 AERAPTSPAAFPRTENTIDSKELLTSISA 368

[Close]

BLAST of Csor.00g097000 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 294.3 bits (752), Expect = 1.2e-79
Identity = 168/336 (50.00%), Postives = 232/336 (69.05%), Query Frame = 0


Query: 3   ASSLTMAAAAASVSSSSSSSSSSSPCKKLFFAQHLNRIPSHFSPKQKPLKLLELRIHLPN 62
           +S+   +A A S ++++SS+++ +P   L  +   +++   F+PK       +L  + PN
Sbjct: 2   SSAYCSSAVAVSAAATASSAATFNP---LLSSHSNSQLFYRFTPKS-----FKLVANCPN 61

Query: 63  IYPLAFSSASHLYCAPPAFEGLEVSDPI-----TEDAETEESDGGEESREEDEQKVSASR 122
              L  +   H +      E     D I      E+   EE D GEE  EE++Q   AS 
Sbjct: 62  PLILHSNIRRHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG 121

Query: 123 DAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEA 182
           + G+LY+GNLPY +TSS+L+++F EAG VV VQ++YDKVTDRSRGF FVTM ++EEAKEA
Sbjct: 122 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 181

Query: 183 IRMFDGSLIGGRTVRVNFPEVPRGGEKEVMGPKIRSSYNKFVDSPHKIYAGNLGWGLTSQ 242
           ++MF+ S IGGRTV+VNFPEVPRGGE EVM  KIR +   +VDSPHK+YAGNLGW LTSQ
Sbjct: 182 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQ 241

Query: 243 SLREAFENQPGILSAKVIYDRESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLN 302
            L++AF +QPG+L AKVIY+R +GRSRGFGF+SFE+AE+ +SAL +MNGVEVEGR LRLN
Sbjct: 242 GLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLN 301

Query: 303 MAADR-----APTSPAAFTRTENTIDSNELLTSISA 329
           +A++R     +P S       E +++SNE+L+++SA
Sbjct: 302 LASEREKPTVSPPSVEEGETEEASLESNEVLSNVSA 329

[Close]

BLAST of Csor.00g097000 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.5 bits (402), Expect = 4.7e-39
Identity = 90/227 (39.65%), Postives = 141/227 (62.11%), Query Frame = 0


Query: 90  ITEDAETEESDGGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAGHVVSV 149
           IT + E EE DG  +     EQ  SA     KL++GNLP+ + S+QL ++F  AG+V  V
Sbjct: 65  ITSEFEVEE-DGFADVAPPKEQSFSADL---KLFVGNLPFNVDSAQLAQLFESAGNVEMV 124

Query: 150 QVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGEKEVMG 209
           +VIYDK+T RSRGF FVTM+++ E + A + F+G  + GR +RVN  P  P+  +    G
Sbjct: 125 EVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRG 184

Query: 210 PKIRSSYNKF-----------VDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYD 269
           P  RSS+                S +++Y GNL WG+   +L   F  Q  ++ A+VIYD
Sbjct: 185 P--RSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 244

Query: 270 RESGRSRGFGFVSFETAEDAESALDSMNGVEVEGRPLRLNMAADRAP 305
           R+SGRS+GFGFV+++++++ ++A+ S++G +++GR +R++ A  R P
Sbjct: 245 RDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285

[Close]

BLAST of Csor.00g097000 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-34
Identity = 107/335 (31.94%), Postives = 163/335 (48.66%), Query Frame = 0


Query: 42  SHFSPKQKPLKL------------LELRIHLPNIYPLAFSSASHLYCAPPA-FEGLEVSD 101
           S F+PK  PL +            L  ++H  ++  +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 102 -PITEDAETEESD---GGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAG 161
             ++ D E EE D    G++S   +    S      KL++GNL + + S+QL ++F  AG
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDL---KLFVGNLSFNVDSAQLAQLFESAG 128

Query: 162 HVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGE 221
           +V  V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E
Sbjct: 129 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 188

Query: 222 KEVMGPKI------------------------------------------------RSSY 281
               GP+                                                 RSSY
Sbjct: 189 SFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSY 248

Query: 282 ------NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFV 305
                      S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV
Sbjct: 249 GSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 308

[Close]

BLAST of Csor.00g097000 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-34
Identity = 107/335 (31.94%), Postives = 163/335 (48.66%), Query Frame = 0


Query: 42  SHFSPKQKPLKL------------LELRIHLPNIYPLAFSSASHLYCAPPA-FEGLEVSD 101
           S F+PK  PL +            L  ++H  ++  +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 102 -PITEDAETEESD---GGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAG 161
             ++ D E EE D    G++S   +    S      KL++GNL + + S+QL ++F  AG
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDL---KLFVGNLSFNVDSAQLAQLFESAG 128

Query: 162 HVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGE 221
           +V  V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E
Sbjct: 129 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 188

Query: 222 KEVMGPKI------------------------------------------------RSSY 281
               GP+                                                 RSSY
Sbjct: 189 SFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSY 248

Query: 282 ------NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFV 305
                      S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV
Sbjct: 249 GSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 308

[Close]

BLAST of Csor.00g097000 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-34
Identity = 107/335 (31.94%), Postives = 163/335 (48.66%), Query Frame = 0


Query: 42  SHFSPKQKPLKL------------LELRIHLPNIYPLAFSSASHLYCAPPA-FEGLEVSD 101
           S F+PK  PL +            L  ++H  ++  +  SSA  L C+ PA +    V +
Sbjct: 9   SAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSA--LKCSSPAEYPSRFVRN 68

Query: 102 -PITEDAETEESD---GGEESREEDEQKVSASRDAGKLYIGNLPYAMTSSQLTEVFAEAG 161
             ++ D E EE D    G++S   +    S      KL++GNL + + S+QL ++F  AG
Sbjct: 69  VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDL---KLFVGNLSFNVDSAQLAQLFESAG 128

Query: 162 HVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRMFDGSLIGGRTVRVNF-PEVPRGGE 221
           +V  V+VIYDKVT RSRGF FVTM+T  E + A + F+G    GR +RVN  P  P+  E
Sbjct: 129 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 188

Query: 222 KEVMGPKI------------------------------------------------RSSY 281
               GP+                                                 RSSY
Sbjct: 189 SFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSY 248

Query: 282 ------NKFVDSPHKIYAGNLGWGLTSQSLREAFENQPGILSAKVIYDRESGRSRGFGFV 305
                      S +++Y GNL WG+   +L   F  Q  ++ A+VIYDR+SGRS+GFGFV
Sbjct: 249 GSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 308

The following BLAST results are available for this feature:

BLAST of Csor.00g097000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	1.3e-81	54.83	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	1.7e-78	50.00	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P49314	3.8e-41	42.71	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q08937	5.4e-40	39.33	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q08935	3.9e-38	36.05	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of Csor.00g097000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580756.1	6.47e-223	100.00	hypothetical protein SDJN03_20758, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022934919.1	6.96e-220	99.39	33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata] >XP_022934920.1 33 ...	[more]
XP_023527627.1	8.08e-220	98.79	33 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG7017509.1	1.40e-219	99.39	hypothetical protein SDJN02_19374 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022983024.1	8.62e-212	96.96	33 kDa ribonucleoprotein, chloroplastic [Cucurbita maxima]	[more]

BLAST of Csor.00g097000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F948	3.37e-220	99.39	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J651	4.17e-212	96.96	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]
A0A1S3B7N1	1.34e-181	83.28	33 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486688 ...	[more]
A0A5D3DPZ1	1.90e-181	83.28	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7TK11	1.04e-180	83.28	33 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Csor.00g097000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52380.1	1.2e-79	50.00	chloroplast RNA-binding protein 33	[more]
AT2G37220.1	4.7e-39	39.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	2.1e-34	31.94	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	2.1e-34	31.94	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	2.1e-34	31.94	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 121..194 e-value: 8.8E-28 score: 108.3 coord: 224..297 e-value: 4.6E-26 score: 102.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 122..192 e-value: 7.6E-20 score: 70.5 coord: 225..295 e-value: 2.0E-19 score: 69.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 223..301 score: 19.17783
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 120..198 score: 19.194885
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 208..310 e-value: 1.7E-25 score: 91.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 85..206 e-value: 8.2E-30 score: 105.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..105
None	No IPR available	PANTHER	PTHR48025:SF11	RNA-BINDING PROTEIN CP33, CHLOROPLASTIC	coord: 9..311
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 9..311
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 121..197 e-value: 1.90815E-32 score: 113.862
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 116..196
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 218..307

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g097000.m01	Csor.00g097000.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding