Csor.00g096710 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g096710
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	ubiquitin-conjugating enzyme E2 variant 1D
Location	Csor_Chr14: 1535515 .. 1539823 (+)
RNA-Seq Expression	Csor.00g096710
Synteny	Csor.00g096710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCTTGGTTCAGGAGGCTCGAGTGTTGTTGGTTAGTCTTTTTAATCTGTTCGTCAAAATTTGATTGATCTCAAGCATTCTCTTTCACATCCTCATTTTTTTTTTTTCTGATTTGACTATTTCATCGATATTTTTATTGATCGTTGATGGACTTGTGTTAATTGTTCAATATTTTAACTTTTATTTGACCCCTTTGCAAATATCTGTGCGTTGCATTCTCCGCCGTTGATGTATTTGCTTCTGTTACTCTTGTTTTTCTGTGTGTTCTATGAGATTTGGTTTGCTCTGAAATCTAAATGCTATACTTGATTTTGTAGGTCAAACTAGTTTTGGTGTGAAATAATGTTGGACCTTCGTGATTGAACTCGTCTTTACTTTATTGTGAATGCTCTCTGTGGCTTATTTTGGACAGATGTCCGCTACATCGTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAGGGTTTGGCTACTGGCTATTGTTTATGTGTATTTTGTGAACTAGAAACCCTGACACGTTCCAGAGCGATGAATCACATTTTTTGTTGTTGTATAAATGCCTATACCTCATAGTTGTCTTAATTACATGTATTCTTAGGGCTCTTCTACATCATCTTGTATTTTGGCAACGTTTTAAATTCAATTTGTAATCACGAATTCAAGGTTAATTGATTTCTTTAATTATCTCAAACATCTAAACGAGGAGAAAAATGGTCTGCTTTCGACTGTTCCAGATTTTTCGTTACATACATAACGTACTTTAGAAGACTTTTTGAAGCTTAGGATGGAGACTTGCTTTGGACGAGGCTCAATTGAACTCTGTAAACAAAAACGTAAAGAATGAGTAGAACTTGTCTGTGATAATAAGAACGGTGTTGAATGACATTTTAGAATCTTTCTTTAAGTAAGTAAAGATTGGATATATGAGTTTTTAAATTTTTAATGATGATGATAATAGTTATTCTTAGTACTACTGGATAATGCAGTTTGATGGTTTTTATCAATGCTTTTGTATTTGGATTGAGGATAATCCCTCAAACTACTTCGAGGCTTGTGCCTCACCTCTTTAGACGAAAAGATCTCGATGCTGTTTTTTACTTTTATAACATTGTTTGGATGTCACTTGAGCCTCAGATATGAAAAAAAATTAACTCAAGCACTTTTTCCTCCAAGTTTGACTGAACAATAGACTTTGCAATTGATTGAACGGGCTCCTATTTTAGTTAAGCTTTCACTGAAAATTGTGCATTTTTCTTAAAATCAAAGTATTTAATTTACAAATGTAGACTGTAATTTATATAACATGAGTAGGATGTGGTTGGGGGATTATCCTGCCAGCTTTTTTATCCCTTAGCCTCATTAAATAATTTGGAAAATGATGTTTTCATTGGTTTCCTTCGCTGTTGCCCAGTCACCTTCAGTGAGAGCCAATACGTGTAGAGCGTTCATTGCTTGAGTGATCAAGGGGTGCACACAATAAGTCACACATTTTGAGTTGAAATTTGGCACCCGGAAATGTTGAGTTCATGACAGCCAATGTGAATGCTCTACTTAAGAGACCTTGGCAATCTGCCCTCGTTTTCCCTCTTAGATAGCAAACAAGTCGAAAGACTTCTACCCTAGAATGCTAGATATTGTATTATTCCTAGTATATTTACTGGCATATTTTGACCATATATTAGCTCACCATGGCTCATCCCACCATTGAAATATGTTTGAGTCACAAGTTGGTCAAATGAAGGACTGGTAGTTAAAAAATCCAACATATGATTGATATGATAGAACTAACTCAAAGAAACATGCAATTCTTGGGAAAATCACTGAGATGTTCAAAATTTGGCTGACCGTATAGATTAAATAATAAAATCGGAAGAACTTCATGATGTGAAGTTAGACTTGTGCTAGACTGCTACCCATGATTGACATAAGCATGAAAGTGGAAAACGGAACCATCTGGGAAGATGAATACTTGTCCTGCACTAATAATTATGAGGTGTGGGAATGTGCGATGGTACAACAAGGGGTGGTTGAAATCAAATTGGAACTTGCCAAACCTAAATTTGAGTGGCAAGTAGTCAAGATTCAAGGGTCTAAGACTAAGACTAAGGTGTCTTAAGGGAGTTGGACCTCGGTGGAAGCTATAGATGTAACCAGGTGCTTATGATGTATGGTTGGAGTTTGAACATTTATGTAATTTAGTACTCGATTTTTTGAGTTTCCAGCCATGTCTAGGATTTTCCAGATTGTTACTATCAATCTCAGATTCTTGTCAAGGTAGGTCAGTGCTAAATTGCAAAACAATTTTGATGTTCGCTGTGTTCCAAGATAGACACGACCCAGGTGGTGTTGGATTTTCACATATTATGATTGATTTGCTAAATCCTCCTCGTGCTTATGTGGTACTCATTTGGAGTCCCCGTACAGAATTGTTTGATGGAAGTTGGAAATATCCTTTTTTTTTGTTACACCATGGAGTAAGCTACTTAAAGAGCAATTGCATCCTTAAAATTTGTGGCTTATTTTGTTGGGGTGTTAATTTTTGGCATATGCTGAAATAAATGGCAATAGTTTGGTTGAATGAGGGCAGTTAAATGGGAATATTAGCATACTCTTTGCTAGGTCATGGTGATTTCTAGGGAGGCAAGTAATATTAACTGTTATATGTTGGCATCTGGGTGTAGTCGATATATGGAATAGTTTAAGTTTATCCACATGGTTTGAGAGATTCGTTCATAGGAAGTGGTTATAAAAATAAATGGAGAGGAAGCCAGATGGGCAGTGCTGATAATGAGTTCTCCAAATAGCTTGGAATTGGGAGAATAAGAGGAAAATTCTCAAATTCCATCCTTCTTTTTTTCTATCTTTCCTTCATTCTAGTACGAATATCAATTTGGTTCATCAATGTGATGGCATATGAAGCTTTTGATACAGAAGCACCATAATGAACATAAGAGAAATGTCTGACAGGACATTCTTGAATAATTTAGTACAATTATCAATATGATTATACTTCTCTCTGAATAAATTGAATTGGTGTGGAGTGATTGTAAACCAGTCAGTTGGGTCCACTATTTTTCTATGTTGCTCTCTGTGAGGGCAAGTCGATTAAATAATTTGTACATTGCAGATTGTAAAGTTGTGTGATGTAGATGTCTCGCCATTGTCAAAACTTAAGCATCTTCTAAAGTGGTTGCTTTCTATCACAGTTCCTAGGAACTTCCGGCTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGTGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGTTCATGGACTGGCACCATTATTGGTCCACACAATGTAATGACTTCTGCCCTTCTTTTCAGGAATTTTAGTTCATTGCCTTGCTCGTGAAGAAAATTTGAAAATTTATAATTCATACTTACCACCTAATATATATATAATTCATCAAATATCATTCATTGCTATAGGCACTATTCCTGCTCTTTTCCAATTGTAATTAGCTAACATGTCTTTCTTCTTGAATTTTGGAGGAAAGGTCTTTTTTCTTTCTTTTTTTTTTCAAAGCTTTGTATCAACAACATGAGGGGGCAGGGTCTGTAAATGGTTGGTATGATAAATGCTCTCAGGAGTTTTAAGCAGAAAATTGGCGGTCTACCTTATTTTACAATTGCTATTTTATGGCGATACGTATGGTGCAGTAAAAATTCATCATGCTTCTTTTTTTCTTGCAGACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTTTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTATCTTTGTTTTTATTCACATAGTTGACAATATGAATCTCTCGGTATTTTTTTTATTGAACTAAAAGTTGATATTTGAAAGAAAGACCAAAAGATAAGTGTAATATGAATATATAAATTGTACATTAAACTTGTGTTTTCAGAATTTTAGCTCCAATAGCAGCAAGTACACCAACTGTTATATTTTGTTTACCTAGATTTTATTAACTGATCTTCATGTTCTTTCTCTACGGTGCTAATTTTGATTTGTTACCCAATGATTGATTTCCAACAGGTTGAGTCAAAAAAATTTGGACTTCTTGCAAATTGGCAGCGAGAGTACTCCATGGAGGATATACTGACGCAGCTGAAAAAGGAAATGACAGCCCCGCATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAG

mRNA sequence

ATGACGCTTGGTTCAGGAGGCTCGAGTGTTGTTGTTCCTAGGAACTTCCGGCTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGTGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGTTCATGGACTGGCACCATTATTGGTCCACACAATACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTTTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAAAAATTTGGACTTCTTGCAAATTGGCAGCGAGAGTACTCCATGGAGGATATACTGACGCAGCTGAAAAAGGAAATGACAGCCCCGCATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAG

Coding sequence (CDS)

ATGACGCTTGGTTCAGGAGGCTCGAGTGTTGTTGTTCCTAGGAACTTCCGGCTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGTGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGTTCATGGACTGGCACCATTATTGGTCCACACAATACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTTTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAAAAATTTGGACTTCTTGCAAATTGGCAGCGAGAGTACTCCATGGAGGATATACTGACGCAGCTGAAAAAGGAAATGACAGCCCCGCATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAG

Protein sequence

MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKEMTAPHNRKLVQPPEGTYF

Homology

[Close]

BLAST of Csor.00g096710 vs. ExPASy Swiss-Prot
Match: Q9SVD7 (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-78
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREY+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 147
           IL QLKKEM+  HNRKLVQPPEGT F
Sbjct: 121 ILVQLKKEMSTSHNRKLVQPPEGTCF 146

[Close]

BLAST of Csor.00g096710 vs. ExPASy Swiss-Prot
Match: Q9SJ44 (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.0e-78
Identity = 134/146 (91.78%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGS GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGS-GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+Y+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 147
           ILTQLKKEM A HNRKLVQPPEGT+F
Sbjct: 121 ILTQLKKEMAASHNRKLVQPPEGTFF 145

[Close]

BLAST of Csor.00g096710 vs. ExPASy Swiss-Prot
Match: Q93YP0 (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.8e-59
Identity = 103/141 (73.05%), Postives = 119/141 (84.40%), Query Frame = 0


Query: 3   LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
           + S  + VVVPRNFRLLEELERGEKGIGDGTVSYGMDD DDIYM+SWTGTI+GP NT +E
Sbjct: 1   MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYE 60

Query: 63  GRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDIL 122
           G+I+QLKLFC K+YP+ PP+VRF +R+NM CVN ETGVVE   F +L NW+REY+MEDIL
Sbjct: 61  GKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDIL 120

Query: 123 TQLKKEMTAPHNRKLVQPPEG 144
            +LKKEM   HNRKL QPPEG
Sbjct: 121 VKLKKEMMTSHNRKLAQPPEG 141

[Close]

BLAST of Csor.00g096710 vs. ExPASy Swiss-Prot
Match: Q9CAB6 (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.4e-58
Identity = 101/141 (71.63%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 3   LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
           +GS    VVVPRNFRLLEELERGEKGIGDGTVSYGMDD DDI M+SWTGTI+GPHNT +E
Sbjct: 1   MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query: 63  GRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDIL 122
           G+I+QLKLFC KDYP+ PP+VRF SR+NM CVN E GVV+   F +L+NW+RE++MED+L
Sbjct: 61  GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLL 120

Query: 123 TQLKKEMTAPHNRKLVQPPEG 144
            QLKKEM +  NRKL QP EG
Sbjct: 121 IQLKKEMMSSQNRKLAQPLEG 141

[Close]

BLAST of Csor.00g096710 vs. ExPASy Swiss-Prot
Match: Q54D06 (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=44689 GN=ube2v PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-44
Identity = 76/135 (56.30%), Postives = 104/135 (77.04%), Query Frame = 0


Query: 12  VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF 71
           +PRNF LLEELE GEK  GDGT+SYG++  DDI + SW GTIIGP NT  + R Y LKL+
Sbjct: 4   IPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLY 63

Query: 72  CDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKEMTA 131
           CDKDYP+KPP+VRF +++N+ CVN + GVV+ K   +L+NW  +  +++IL++L++EM++
Sbjct: 64  CDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSS 123

Query: 132 PHNRKLVQPPEGTYF 147
             N+KLVQPPEG  F
Sbjct: 124 SSNKKLVQPPEGANF 138

[Close]

BLAST of Csor.00g096710 vs. NCBI nr
Match: XP_022935384.1 (ubiquitin-conjugating enzyme E2 variant 1C-like [Cucurbita moschata] >XP_023528271.1 ubiquitin-conjugating enzyme E2 variant 1C [Cucurbita pepo subsp. pepo] >KAG6580727.1 Ubiquitin-conjugating enzyme E2 variant 1D, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017481.1 Ubiquitin-conjugating enzyme E2 variant 1D [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310 bits (793), Expect = 1.47e-106
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED
Sbjct: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEMTAPHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. NCBI nr
Match: XP_022983154.1 (ubiquitin-conjugating enzyme E2 variant 1C [Cucurbita maxima])

HSP 1 Score: 308 bits (788), Expect = 8.48e-106
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED
Sbjct: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. NCBI nr
Match: XP_022144653.1 (ubiquitin-conjugating enzyme E2 variant 1C [Momordica charantia] >XP_038904037.1 ubiquitin-conjugating enzyme E2 variant 1C [Benincasa hispida])

HSP 1 Score: 306 bits (785), Expect = 2.43e-105
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. NCBI nr
Match: XP_004136503.1 (ubiquitin-conjugating enzyme E2 variant 1C [Cucumis sativus] >XP_008442892.1 PREDICTED: ubiquitin-conjugating enzyme E2 variant 1C [Cucumis melo] >KGN59179.1 hypothetical protein Csa_001903 [Cucumis sativus])

HSP 1 Score: 305 bits (781), Expect = 9.92e-105
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. NCBI nr
Match: XP_021636663.1 (ubiquitin-conjugating enzyme E2 variant 1C isoform X2 [Hevea brasiliensis] >XP_022766996.1 ubiquitin-conjugating enzyme E2 variant 1C [Durio zibethinus])

HSP 1 Score: 305 bits (780), Expect = 1.41e-104
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPPSVRFHSR+NMTCVNHETGVVESKKFGLLANWQREY+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVESKKFGLLANWQREYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. ExPASy TrEMBL
Match: A0A6J1F593 (ubiquitin-conjugating enzyme E2 variant 1C-like OS=Cucurbita moschata OX=3662 GN=LOC111442285 PE=4 SV=1)

HSP 1 Score: 310 bits (793), Expect = 7.09e-107
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED
Sbjct: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEMTAPHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. ExPASy TrEMBL
Match: A0A6J1J6I4 (ubiquitin-conjugating enzyme E2 variant 1C OS=Cucurbita maxima OX=3661 GN=LOC111481792 PE=4 SV=1)

HSP 1 Score: 308 bits (788), Expect = 4.11e-106
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED
Sbjct: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. ExPASy TrEMBL
Match: A0A6J1CTV6 (ubiquitin-conjugating enzyme E2 variant 1C OS=Momordica charantia OX=3673 GN=LOC111014288 PE=4 SV=1)

HSP 1 Score: 306 bits (785), Expect = 1.18e-105
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. ExPASy TrEMBL
Match: A0A0A0LE42 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778350 PE=4 SV=1)

HSP 1 Score: 305 bits (781), Expect = 4.80e-105
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. ExPASy TrEMBL
Match: A0A1S3B6A6 (ubiquitin-conjugating enzyme E2 variant 1C OS=Cucumis melo OX=3656 GN=LOC103486656 PE=4 SV=1)

HSP 1 Score: 305 bits (781), Expect = 4.80e-105
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 146
           ILTQLKKEM APHNRKLVQPPEGTYF
Sbjct: 121 ILTQLKKEMAAPHNRKLVQPPEGTYF 146

[Close]

BLAST of Csor.00g096710 vs. TAIR 10
Match: AT3G52560.1 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 293.5 bits (750), Expect = 9.3e-80
Identity = 135/146 (92.47%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREY+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 147
           IL QLKKEM+  HNRKLVQPPEGT F
Sbjct: 121 ILVQLKKEMSTSHNRKLVQPPEGTCF 146

[Close]

BLAST of Csor.00g096710 vs. TAIR 10
Match: AT2G36060.1 (MMS ZWEI homologue 3 )

HSP 1 Score: 291.6 bits (745), Expect = 3.6e-79
Identity = 134/146 (91.78%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGS GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGS-GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+Y+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 147
           ILTQLKKEM A HNRKLVQPPEGT+F
Sbjct: 121 ILTQLKKEMAASHNRKLVQPPEGTFF 145

[Close]

BLAST of Csor.00g096710 vs. TAIR 10
Match: AT3G52560.2 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 288.9 bits (738), Expect = 2.3e-78
Identity = 135/147 (91.84%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-T 60
           MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN T
Sbjct: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVT 60

Query: 61  VHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSME 120
           VHEGRIYQLKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREY+ME
Sbjct: 61  VHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTME 120

Query: 121 DILTQLKKEMTAPHNRKLVQPPEGTYF 147
           DIL QLKKEM+  HNRKLVQPPEGT F
Sbjct: 121 DILVQLKKEMSTSHNRKLVQPPEGTCF 147

[Close]

BLAST of Csor.00g096710 vs. TAIR 10
Match: AT2G36060.2 (MMS ZWEI homologue 3 )

HSP 1 Score: 287.0 bits (733), Expect = 8.7e-78
Identity = 134/147 (91.16%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-T 60
           MTLGS GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN T
Sbjct: 1   MTLGS-GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVT 60

Query: 61  VHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSME 120
           VHEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+Y+ME
Sbjct: 61  VHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTME 120

Query: 121 DILTQLKKEMTAPHNRKLVQPPEGTYF 147
           DILTQLKKEM A HNRKLVQPPEGT+F
Sbjct: 121 DILTQLKKEMAASHNRKLVQPPEGTFF 146

[Close]

BLAST of Csor.00g096710 vs. TAIR 10
Match: AT2G36060.3 (MMS ZWEI homologue 3 )

HSP 1 Score: 285.4 bits (729), Expect = 2.5e-77
Identity = 133/146 (91.10%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
           MTLGS GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV
Sbjct: 1   MTLGS-GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60

Query: 61  HEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMED 120
           HEGRIYQLKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TG V+SKKFG+LANWQR+Y+MED
Sbjct: 61  HEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTG-VDSKKFGVLANWQRQYTMED 120

Query: 121 ILTQLKKEMTAPHNRKLVQPPEGTYF 147
           ILTQLKKEM A HNRKLVQPPEGT+F
Sbjct: 121 ILTQLKKEMAASHNRKLVQPPEGTFF 144

The following BLAST results are available for this feature:

BLAST of Csor.00g096710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVD7	1.3e-78	92.47	Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9SJ44	5.0e-78	91.78	Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q93YP0	1.8e-59	73.05	Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9CAB6	4.4e-58	71.63	Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q54D06	2.1e-44	56.30	Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=...	[more]

BLAST of Csor.00g096710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935384.1	1.47e-106	100.00	ubiquitin-conjugating enzyme E2 variant 1C-like [Cucurbita moschata] >XP_0235282...	[more]
XP_022983154.1	8.48e-106	99.32	ubiquitin-conjugating enzyme E2 variant 1C [Cucurbita maxima]	[more]
XP_022144653.1	2.43e-105	98.63	ubiquitin-conjugating enzyme E2 variant 1C [Momordica charantia] >XP_038904037.1...	[more]
XP_004136503.1	9.92e-105	97.95	ubiquitin-conjugating enzyme E2 variant 1C [Cucumis sativus] >XP_008442892.1 PRE...	[more]
XP_021636663.1	1.41e-104	97.26	ubiquitin-conjugating enzyme E2 variant 1C isoform X2 [Hevea brasiliensis] >XP_0...	[more]

BLAST of Csor.00g096710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F593	7.09e-107	100.00	ubiquitin-conjugating enzyme E2 variant 1C-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J6I4	4.11e-106	99.32	ubiquitin-conjugating enzyme E2 variant 1C OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1CTV6	1.18e-105	98.63	ubiquitin-conjugating enzyme E2 variant 1C OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A0A0LE42	4.80e-105	97.95	UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778350 PE...	[more]
A0A1S3B6A6	4.80e-105	97.95	ubiquitin-conjugating enzyme E2 variant 1C OS=Cucumis melo OX=3656 GN=LOC1034866...	[more]

BLAST of Csor.00g096710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52560.1	9.3e-80	92.47	ubiquitin E2 variant 1D-4	[more]
AT2G36060.1	3.6e-79	91.78	MMS ZWEI homologue 3	[more]
AT3G52560.2	2.3e-78	91.84	ubiquitin E2 variant 1D-4	[more]
AT2G36060.2	8.7e-78	91.16	MMS ZWEI homologue 3	[more]
AT2G36060.3	2.5e-77	91.10	MMS ZWEI homologue 3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 16..144 e-value: 1.5E-4 score: 28.2
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 10..140
None	No IPR available	PANTHER	PTHR24068:SF370	UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1D	coord: 10..140
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 43..136 e-value: 4.3E-14 score: 52.4
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 13..146 score: 32.051857
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 4..146 e-value: 1.1E-42 score: 147.0
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 11..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g096710.m01	Csor.00g096710.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0070534	protein K63-linked ubiquitination
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016746	acyltransferase activity
molecular_function	GO:0004839	ubiquitin activating enzyme activity