Csor.00g096500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g096500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	SRP54 domain-containing protein
Location	Csor_Chr14: 1438761 .. 1439375 (-)
RNA-Seq Expression	Csor.00g096500
Synteny	Csor.00g096500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCTCAGGCAGAGATGGCGGAGTAACCAGTGCAGCAGGTTCCCGGTTTCCGGGCGTGGACGGTGAGAGAGAGTTAAATCCCAGCCATAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGATATTAAGGTAATTTTAACTTTTAGGTTTAGAAATTAAAATTTTATTTTCTTAAGGAATTAAGAAAAATGTATTTAAAAGTTAAGAGTATAAAATAATTTTGAAAATTAAAAATAGGTTTAAATAATGGTTGAAAAGATTATTAGACAGAACGCACCCTCGCTCTCATGGTCATTCCTTGATTAGAAACTCACGATCATTCCATAAATTAGGTGACGTGAACTTTCATCGTCCAACGAATATAATATATTAAAAAAATATTAAACTGAATGTAAAATTATATTGAAGAAGAAAGTGTTTGTTGTGAAATCTCAGGAGCAGGAGAAGAGAAAAGCAGCGGAAGAAGAACGAAACCGGGCGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATTGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTACGAGAAAACTGA

mRNA sequence

ATGGCGAGCTCAGGCAGAGATGGCGGAGTAACCAGTGCAGCAGGTTCCCGGTTTCCGGGCGTGGACGGTGAGAGAGAGTTAAATCCCAGCCATAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGATATTAAGGAGCAGGAGAAGAGAAAAGCAGCGGAAGAAGAACGAAACCGGGCGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATTGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTACGAGAAAACTGA

Coding sequence (CDS)

ATGGCGAGCTCAGGCAGAGATGGCGGAGTAACCAGTGCAGCAGGTTCCCGGTTTCCGGGCGTGGACGGTGAGAGAGAGTTAAATCCCAGCCATAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGATATTAAGGAGCAGGAGAAGAGAAAAGCAGCGGAAGAAGAACGAAACCGGGCGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATTGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTACGAGAAAACTGA

Protein sequence

MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAEEERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN

Homology

[Close]

BLAST of Csor.00g096500 vs. NCBI nr
Match: KAG6580706.1 (hypothetical protein SDJN03_20708, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (473), Expect = 3.64e-59
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60
           MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE
Sbjct: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60

Query: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN
Sbjct: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102

[Close]

BLAST of Csor.00g096500 vs. NCBI nr
Match: KAG7017465.1 (hypothetical protein SDJN02_19330 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184 bits (467), Expect = 2.99e-58
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60
           MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE
Sbjct: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60

Query: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EERNRAKKMEA QTLKMPFIVSSVIAAVAVVAFAIVKNLREN
Sbjct: 61  EERNRAKKMEAKQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102

[Close]

BLAST of Csor.00g096500 vs. NCBI nr
Match: XP_023528882.1 (uncharacterized protein LOC111791675 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170 bits (430), Expect = 1.28e-52
Identity = 96/102 (94.12%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60
           MASSGRDGGVT+AAGSRFP  DGERELNP HNKHVDVDPISSEAAASL IKEQEKRKAAE
Sbjct: 1   MASSGRDGGVTNAAGSRFP-ADGERELNPGHNKHVDVDPISSEAAASLVIKEQEKRKAAE 60

Query: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EERNRAKK EAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN
Sbjct: 61  EERNRAKKKEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 101

[Close]

BLAST of Csor.00g096500 vs. NCBI nr
Match: XP_022983165.1 (uncharacterized protein LOC111481798 [Cucurbita maxima])

HSP 1 Score: 170 bits (430), Expect = 1.32e-52
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60
           MASS RDGGVT+AAGSRFPGVDGERELNP HNK VDVDPISSEAAASL IKEQEKRKAAE
Sbjct: 1   MASSDRDGGVTNAAGSRFPGVDGERELNPGHNKQVDVDPISSEAAASLVIKEQEKRKAAE 60

Query: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EERNRAKK EAMQTLKMPFIVSSVIAAVAVVAFAIVK LREN
Sbjct: 61  EERNRAKKKEAMQTLKMPFIVSSVIAAVAVVAFAIVKKLREN 102

[Close]

BLAST of Csor.00g096500 vs. NCBI nr
Match: XP_022935404.1 (uncharacterized protein LOC111442294 [Cucurbita moschata])

HSP 1 Score: 167 bits (424), Expect = 1.05e-51
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60
           MASSGRDGGVT+AAGSRFP  DGERELNP  NKHVDVDPISSEAAASL IKEQEKRKAAE
Sbjct: 1   MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60

Query: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EERNR KKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN
Sbjct: 61  EERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 101

[Close]

BLAST of Csor.00g096500 vs. ExPASy TrEMBL
Match: A0A6J1J505 (uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 6.38e-53
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60
           MASS RDGGVT+AAGSRFPGVDGERELNP HNK VDVDPISSEAAASL IKEQEKRKAAE
Sbjct: 1   MASSDRDGGVTNAAGSRFPGVDGERELNPGHNKQVDVDPISSEAAASLVIKEQEKRKAAE 60

Query: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EERNRAKK EAMQTLKMPFIVSSVIAAVAVVAFAIVK LREN
Sbjct: 61  EERNRAKKKEAMQTLKMPFIVSSVIAAVAVVAFAIVKKLREN 102

[Close]

BLAST of Csor.00g096500 vs. ExPASy TrEMBL
Match: A0A6J1F5B5 (uncharacterized protein LOC111442294 OS=Cucurbita moschata OX=3662 GN=LOC111442294 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 5.08e-52
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60
           MASSGRDGGVT+AAGSRFP  DGERELNP  NKHVDVDPISSEAAASL IKEQEKRKAAE
Sbjct: 1   MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60

Query: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EERNR KKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN
Sbjct: 61  EERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 101

[Close]

BLAST of Csor.00g096500 vs. ExPASy TrEMBL
Match: A0A6J1CUK2 (uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014362 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 4.54e-37
Identity = 72/102 (70.59%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAE 60
           MAS G DGGV+ AAGS FP  D +RELNP HN+HV+VDP+SSE A SL+ KEQ KRKA E
Sbjct: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE 60

Query: 61  EERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EER  AKK + M+TLK  FIVS VIAAVAV AFAIVK LREN
Sbjct: 61  EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

[Close]

BLAST of Csor.00g096500 vs. ExPASy TrEMBL
Match: A0A6J1KYC8 (uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680 PE=4 SV=1)

HSP 1 Score: 126 bits (316), Expect = 1.56e-35
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAA- 60
           MAS GRDGG T  AGSRFP VD +REL+P HN+HV VDPISS+ AAS++ KEQ KRKA  
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EEER +AKK + MQTLK  FIVS VIAAVAV AF +VK LR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of Csor.00g096500 vs. ExPASy TrEMBL
Match: A0A6J1G5S8 (uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC111451047 PE=4 SV=1)

HSP 1 Score: 125 bits (315), Expect = 2.21e-35
Identity = 70/103 (67.96%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MASSGRDGGVTSAAGSRFPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAA- 60
           MAS GRDGG T  AGSRFP VD +REL+P HN+HV VDPISS+ AAS++ KEQ KRKA  
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERNRAKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EEER +AKK + MQTLK  FIVS V+AAVAV AF +VK LR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of Csor.00g096500 vs. TAIR 10
Match: AT3G52620.1 (unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-10
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 18  FPGVDGERELNPSHNKHVDVDPISSEAAASLDIKEQEKRKAAEEERNRAKKMEAMQTLKM 77
           FP  D E ELNP  NK+ +VDP+SSE A+      ++ +K  E+  N   K +  +TLK 
Sbjct: 8   FPEGDAEAELNPGQNKNFEVDPVSSEIAS------EKVQKIVEKRENAKAKRDGARTLKN 67

Query: 78  PFIVSSVIAAVAVVAFAIVKNLREN 103
             IVS+VI AVA  AFAI K L+EN
Sbjct: 68  TIIVSAVIVAVAGAAFAITKKLKEN 86

The following BLAST results are available for this feature:

BLAST of Csor.00g096500 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g096500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580706.1	3.64e-59	100.00	hypothetical protein SDJN03_20708, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017465.1	2.99e-58	99.02	hypothetical protein SDJN02_19330 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023528882.1	1.28e-52	94.12	uncharacterized protein LOC111791675 [Cucurbita pepo subsp. pepo]	[more]
XP_022983165.1	1.32e-52	93.14	uncharacterized protein LOC111481798 [Cucurbita maxima]	[more]
XP_022935404.1	1.05e-51	93.14	uncharacterized protein LOC111442294 [Cucurbita moschata]	[more]

BLAST of Csor.00g096500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J505	6.38e-53	93.14	uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798...	[more]
A0A6J1F5B5	5.08e-52	93.14	uncharacterized protein LOC111442294 OS=Cucurbita moschata OX=3662 GN=LOC1114422...	[more]
A0A6J1CUK2	4.54e-37	70.59	uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1KYC8	1.56e-35	68.93	uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680...	[more]
A0A6J1G5S8	2.21e-35	67.96	uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]

BLAST of Csor.00g096500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52620.1	1.9e-10	47.06	unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR37741	TRANSMEMBRANE PROTEIN	coord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g096500.m01	Csor.00g096500.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane