Csor.00g096040 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g096040
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 1169237 .. 1169687 (-)
RNA-Seq Expression	Csor.00g096040
Synteny	Csor.00g096040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATGAACGGAGAACCACGAGAAGTTCAACTTTCCGGTGGGTTTCCCGGAATGTTGTACTGCCGGAGCCGGACATGGCGGGGATTGGTTTCTTATCATTCGAAATCAAGCCTCTTATGTCAAATTGGGTAATTAGAAGACGATGTTGATTAGTGTCTTGATTGGGGACAAATGTTTGAACCCTGTTCTTCACGAAAAATTCGTTAAAAATCCGATGAAGAACGAATTTAATTGGGGCAGATGCCATTACAGATGAAAAAAAAAATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTATTGTGCTCACGGCGGACCTGTCGAGGGAAATGGAGGTTCTAGCCGCGGTTGAACAAAATTTGAGGAGGAACACGACGATTTTTTCCTTCGCCGGCGGCGGTGGAAAATCGTTCAATTACCGTGGCACCGCCGTCGTGTTCAGAGCTTGA

mRNA sequence

ATGGCAAATGAACGGAGAACCACGAGAAGTTCAACTTTCCGGTGGGTTTCCCGGAATGTTGTACTGCCGGAGCCGGACATGGCGGGGATTGGTTTCTTATCATTCGAAATCAAGCCTCTTATGTCAAATTGGATGCCATTACAGATGAAAAAAAAAATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTATTGTGCTCACGGCGGACCTGTCGAGGGAAATGGAGGTTCTAGCCGCGGTTGAACAAAATTTGAGGAGGAACACGACGATTTTTTCCTTCGCCGGCGGCGGTGGAAAATCGTTCAATTACCGTGGCACCGCCGTCGTGTTCAGAGCTTGA

Coding sequence (CDS)

ATGGCAAATGAACGGAGAACCACGAGAAGTTCAACTTTCCGGTGGGTTTCCCGGAATGTTGTACTGCCGGAGCCGGACATGGCGGGGATTGGTTTCTTATCATTCGAAATCAAGCCTCTTATGTCAAATTGGATGCCATTACAGATGAAAAAAAAAATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTATTGTGCTCACGGCGGACCTGTCGAGGGAAATGGAGGTTCTAGCCGCGGTTGAACAAAATTTGAGGAGGAACACGACGATTTTTTCCTTCGCCGGCGGCGGTGGAAAATCGTTCAATTACCGTGGCACCGCCGTCGTGTTCAGAGCTTGA

Protein sequence

MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSNWMPLQMKKKMDRRVKKMQKFIVLTADLSREMEVLAAVEQNLRRNTTIFSFAGGGGKSFNYRGTAVVFRA

Homology

[Close]

BLAST of Csor.00g096040 vs. NCBI nr
Match: KAG6580660.1 (hypothetical protein SDJN03_20662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217 bits (553), Expect = 4.73e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSNWMPLQMKKKMDRRVKKM 60
           MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSNWMPLQMKKKMDRRVKKM
Sbjct: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSNWMPLQMKKKMDRRVKKM 60

Query: 61  QKFIVLTADLSREMEVLAAVEQNLRRNTTIFSFAGGGGKSFNYRGTAVVFRA 112
           QKFIVLTADLSREMEVLAAVEQNLRRNTTIFSFAGGGGKSFNYRGTAVVFRA
Sbjct: 61  QKFIVLTADLSREMEVLAAVEQNLRRNTTIFSFAGGGGKSFNYRGTAVVFRA 112

[Close]

BLAST of Csor.00g096040 vs. NCBI nr
Match: XP_022983368.1 (uncharacterized protein LOC111481975 [Cucurbita maxima])

HSP 1 Score: 124 bits (312), Expect = 1.06e-30
Identity = 88/189 (46.56%), Postives = 94/189 (49.74%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSN----WMPLQ-------- 60
           MA+ERR TRSSTFRWVSR  VLPEPDMAGIGFLSFEI PLMS     W  L+        
Sbjct: 1   MASERRITRSSTFRWVSRKFVLPEPDMAGIGFLSFEIAPLMSKLVQLWNRLEDEEFMRVK 60

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 61  QQISNSKGIEILISNDEQFLMELLRVEIVGDLQYIAKSIARFGDKCSDPVLHKFEKFVED 120

[Close]

BLAST of Csor.00g096040 vs. NCBI nr
Match: KAG7017414.1 (hypothetical protein SDJN02_19279, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122 bits (307), Expect = 5.36e-30
Identity = 88/189 (46.56%), Postives = 94/189 (49.74%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSN----WMPLQ-------- 60
           MA ERR TRSSTFRWVSR VVL EPDMAGIGFLSFEI PLMS     W  L+        
Sbjct: 1   MAIERRITRSSTFRWVSRKVVLSEPDMAGIGFLSFEIAPLMSKLVQLWNRLEDEEFMRVK 60

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 61  RQISNSKGIGILISNDEQFLMELLMVEIVGDLQYIAKSIARFGDKCSDPVLHEFEKFVQD 120

[Close]

BLAST of Csor.00g096040 vs. NCBI nr
Match: KAG6580658.1 (Protein PSK SIMULATOR 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (307), Expect = 5.36e-30
Identity = 88/189 (46.56%), Postives = 94/189 (49.74%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSN----WMPLQ-------- 60
           MA ERR TRSSTFRWVSR VVL EPDMAGIGFLSFEI PLMS     W  L+        
Sbjct: 1   MAIERRITRSSTFRWVSRKVVLSEPDMAGIGFLSFEIAPLMSKLVQLWNRLEDEEFMRVK 60

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 61  RQISNSKGIGILISNDEQFLMELLMVEIVGDLQYIAKSIARFGDKCSDPVLHEFEKFVQD 120

[Close]

BLAST of Csor.00g096040 vs. NCBI nr
Match: XP_023528100.1 (uncharacterized protein LOC111791118 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120 bits (302), Expect = 2.69e-29
Identity = 87/189 (46.03%), Postives = 93/189 (49.21%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSN----WMPLQ-------- 60
           MA ERR  RSSTFRWVSR VVLPE DMAGIGFLSFEI PLMS     W  L+        
Sbjct: 1   MAIERRIARSSTFRWVSRKVVLPELDMAGIGFLSFEIAPLMSKLVQVWNRLEDEEFMRVK 60

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 61  QQISNSKGIGILISNDEQFLMELLMVEIVGDLQYIAKSIARFGDKCSDPVLHEFEKFVED 120

[Close]

BLAST of Csor.00g096040 vs. ExPASy TrEMBL
Match: A0A6J1J7K1 (uncharacterized protein LOC111481975 OS=Cucurbita maxima OX=3661 GN=LOC111481975 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 5.15e-31
Identity = 88/189 (46.56%), Postives = 94/189 (49.74%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMSN----WMPLQ-------- 60
           MA+ERR TRSSTFRWVSR  VLPEPDMAGIGFLSFEI PLMS     W  L+        
Sbjct: 1   MASERRITRSSTFRWVSRKFVLPEPDMAGIGFLSFEIAPLMSKLVQLWNRLEDEEFMRVK 60

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 61  QQISNSKGIEILISNDEQFLMELLRVEIVGDLQYIAKSIARFGDKCSDPVLHKFEKFVED 120

[Close]

BLAST of Csor.00g096040 vs. ExPASy TrEMBL
Match: A0A6J1F859 (uncharacterized protein LOC111441752 OS=Cucurbita moschata OX=3662 GN=LOC111441752 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 2.56e-29
Identity = 87/189 (46.03%), Postives = 93/189 (49.21%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLM------------------- 60
           MA ERR TRSSTFRWVSR VVL EPDMAGIGFLSFEI PLM                   
Sbjct: 1   MAIERRITRSSTFRWVSRKVVLSEPDMAGIGFLSFEIAPLMWKLVQLWNRLEDEEFMRVK 60

Query: 61  -------------SN--------------------------------------------- 104
                        SN                                             
Sbjct: 61  RQISDSKGIGILISNDEQFLMELLMVEIVGDLQYIAKSIARFGDKCSDPVLHEFEKFVQD 120

[Close]

BLAST of Csor.00g096040 vs. ExPASy TrEMBL
Match: A0A5D3DPL2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003400 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.43e-22
Identity = 72/189 (38.10%), Postives = 83/189 (43.92%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMS------------------ 60
           MA ER+  RSSTFRW+SR  + PEP+ A IGFLS EI  LMS                  
Sbjct: 2   MAKERQPKRSSTFRWLSRKAMQPEPEPAAIGFLSLEITALMSKLVQLWNRLEEDEFKKAK 61

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 62  QNLSNSIGIGKLISNDETFLMELFMKEIIEDLQYIAKSIVRFGYRCSDPVLHEFEKFVKD 121

[Close]

BLAST of Csor.00g096040 vs. ExPASy TrEMBL
Match: A0A1S3B950 (uncharacterized protein LOC103487141 OS=Cucumis melo OX=3656 GN=LOC103487141 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.75e-22
Identity = 72/189 (38.10%), Postives = 83/189 (43.92%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMS------------------ 60
           MA ER+  RSSTFRW+SR  + PEP+ A IGFLS EI  LMS                  
Sbjct: 26  MAKERQPKRSSTFRWLSRKAMQPEPEPAAIGFLSLEITALMSKLVQLWNRLEEDEFKKAK 85

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 86  QNLSNSIGIGKLISNDETFLMELFMKEIIEDLQYIAKSIVRFGYRCSDPVLHEFEKFVKD 145

[Close]

BLAST of Csor.00g096040 vs. ExPASy TrEMBL
Match: A0A6J1CU02 (uncharacterized protein LOC111014277 OS=Momordica charantia OX=3673 GN=LOC111014277 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.84e-20
Identity = 65/189 (34.39%), Postives = 84/189 (44.44%), Query Frame = 0


Query: 1   MANERRTTRSSTFRWVSRNVVLPEPDMAGIGFLSFEIKPLMS------------------ 60
           MA E R TRSS+FRW+   +V PEP+ AGIGFL+FEI  LMS                  
Sbjct: 1   MAKEWRKTRSSSFRWIPLKIVPPEPESAGIGFLAFEISVLMSKLVQLWNQLEDTEFTRVK 60

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 61  EQISNSTGIKKLISDDDRFLTELFLNEIVRDLQYVARSIARFATKCSDPVLHEFEKFVRD 120

The following BLAST results are available for this feature:

BLAST of Csor.00g096040 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g096040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580660.1	4.73e-71	100.00	hypothetical protein SDJN03_20662, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022983368.1	1.06e-30	46.56	uncharacterized protein LOC111481975 [Cucurbita maxima]	[more]
KAG7017414.1	5.36e-30	46.56	hypothetical protein SDJN02_19279, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580658.1	5.36e-30	46.56	Protein PSK SIMULATOR 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023528100.1	2.69e-29	46.03	uncharacterized protein LOC111791118 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g096040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7K1	5.15e-31	46.56	uncharacterized protein LOC111481975 OS=Cucurbita maxima OX=3661 GN=LOC111481975...	[more]
A0A6J1F859	2.56e-29	46.03	uncharacterized protein LOC111441752 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A5D3DPL2	7.43e-22	38.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B950	7.75e-22	38.10	uncharacterized protein LOC103487141 OS=Cucumis melo OX=3656 GN=LOC103487141 PE=...	[more]
A0A6J1CU02	5.84e-20	34.39	uncharacterized protein LOC111014277 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of Csor.00g096040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31371	BNAC09G50660D PROTEIN	coord: 50..88
None	No IPR available	PANTHER	PTHR31371:SF4	PLANT/T32M21-140 PROTEIN	coord: 50..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g096040.m01	Csor.00g096040.m01	mRNA