Csor.00g094450 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g094450
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 461425 .. 464842 (-)
RNA-Seq Expression	Csor.00g094450
Synteny	Csor.00g094450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGATGTTTCAAGGAACGATCGTTTTATCGGCTCAGAAGCTCGAAGTCTGTCTGAGGTCAGAAAGTTATTGTGAAATTATATGATTGAGTCCTGTGAAATCGTATATGCCTTCTTCCACGGATGGCTATTTATTTCGGATTCACTAGAAGCACATTTTTTAGTTTTGGCCACTCACTTAATCGATGTCTGGAATGTACTTATAGCTTGATTCACTTTCAGTATGAGGCAAATACACGCTACGTTTTGCTTGTAACTGAAGATTAGGAACCGTATGAATTCGATTGGGCATAAAGTGCAGAAGAAATTTTGCATAAAGTAGAGGGATAAATAATTGAAAAGAAAGAAGGTTTATTAGAAAATTAGAAAGATAGACACTTTTGAAAGAGAAGGCTCTCACACACTCTCTAATCCTCTATTACTTGTTTTTTAAGCGACGCTGTATATTAGGTATACCGTGGGAAATTATGTTATCAGACGTTTAAGGTTTTTGCTTCCTACACAAATTAGTTTGTCACGATGAACAATAGGTTGATGCTTTATCATAAGATCAAATGAAGATATTGTCCGGGAGTTCTGGCATGCAGGCTGGCGTAAGCTGTAAAATTTCAGGTGAAGGTCAGAAAATAACGCATGGGCTATTTGACTATACTCCTAGATACTGTTTCAGATCAAGGGAGTGTGTTTATAAGTAAGGAATACTATATCTGGGTCTGAGGCCTTTTAGGGAAACAAAAAAACAAAGTCATAAGACTTATGTTTAAAGTGGACAATATTATACTATTGTGGAGATTTGTGATTCCTAACATGATATTAGAGTCATGCCCTTAACTTAGTCATGTCAATAGAATCCTCAAATGTCGAACAAATAAGTTGGGACCCTAGAAGGTGTAATCAAAAGTGACTCAAGTGTCGAACAAAGGGAGTACTATGTTTCAGGACTCTAGAGAAAGGAGTCGAGCCTCAATTAAGGGGAGATTGTTCGAGGGCTCCATAGACCTCAGGGGAATCTCTATAATGTACTTTGTTCAAGGGGAGGATTGTTGAGGATTGTTAGAAGGGAGTCCCACGTTGGCTAATTAAGGGAATGATCATGAGTTTATAAGAATGGAATACTATCTCCATTGGTATGAAATCTTTTGGGAAAATCAAAAGAAAAGCGATAAGAGTTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATTCGTGATTCCTAACCGTTACTTTCATGTTATACTCAGGCCTCAAGTAGGCATAGAGAGAAGAATAAGGTTATGGGTTTTGAATTCAAGAGGCGTATGATCGCTATTGATTTTATATGCACGAATGACCTTATAAATTGAATAGAGAAAAGAACATTTAAAATGGACTAAACTTACTTTCACTTGTACGGACCATCCATTAAATTTTGATGTGCTGAAGGACTGGTTTTGGGGAGCCAGTTCTAATGAGCTGAATAGCTGCTTTCTTGACCCATGTCTTGAAAAGTTTTATTTTAACTGCCTGTTGTCACTAGTATTGTCACATTTATCATACAAATCACTTCGTGTTGTTCCCAAAGTAGTGTTGTAGTTACCTATCGAGGACTATTAAGAGGAGTAGTCTCATATTGGCTGGCTAATTAAGAGAAAGATCATGGGTTGATAAGTAAAGAACACTCTCTATTGGTATGAGGCCTTTTAGGAAACCACGAGTAAAGTCATGAGAGCTTATACTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTAGTTCTAAACATGGTATCAGAACCATGCTCTTAACTTAGACATGTCAAAAGAATCCTCAAGTGTCAAAAAAAATAAGTTGTGAATCTCAAAGGTGTAGTCAATAGTGACTCAAGTGTCGAACAGAGGGTGTACTTTGTTTGAGGCTTCCAGAGATGGAGTGTCGAACCTTGATTAAGGGGAGGCCGTTCAAAAGTTCTAAAGAAGAAAGGTCTCAAGGGAGGTTTTATGGTGTATTTTGTTCGAGGGAAGAATTGTTAAGGATTATTAAGAAGAGTATTCTCACCTGGCTAACTAATTTAGAGGAAGATCATAAATTTATAAATTAGAACATTATCTCTTGGCATGAGGTTTTTTGGGGAACCAAAAATAAAACGATGAGAACTTATGTTCAAAGTGAACATATCATTTGATCGGGGAGAGAGTTGTAGGTTTCTAACGTTACCTTCTTCCTTGGAGTTGTCAGTGTGATAAAGTATTGCTTGTGCCTAAAGTATGAATGTCCTGTTTGCAGGTTGCAGGTGTAGAAATAAAAGGTTAAACCTTGTTGATGCTGGAAGAATTTTCTGGAGCTTTAAGCATGGATATCTCCCTCTCTAACCCCATCTCCACACTGCTATTAATCTAAATCACGGTGTACTACCTTTATTTTCCTTTGTTATCTTCTTGAGCCTGAAATTTGTGTTCCTTGCATCCCTTTCTTTTTAATATCACAAAAACCTTAACAAACCCAAGCCAGTTGCATGAGCCTGCCACTGTGTATAAGGTTTTCATGGACCTACATAAAAAAGAAAAAGTATACGATCATCTATCCAGGTCTCGAAAGACTAAAATGTAACCAATTTGAACTAGATTATATGTATACTTCGCTTGTGACCTTAGAATCTGAGTGCGAAGAATATGGCATTACTCTGATTCCACCAATTGATTTCATATGTGAAGAGGCTCCAAAGTCCTATGAAATCAAGACCAGCCGGGCTTATTTGTATGGTATATCGAAAGAATTCGCAAATGGATATATATCTCCAAATCCGTCGACCACAAAAATGCAGTAAATGGATGGGGAAAGGTTAGTAGTCTCTTCAGTCAATTTTTGTTCACATGTAAATGTATTCATCTTATTTTCTAGATTTGTGACATTAAAAAGGGTGGTTTCTGTTAGCCAAAGAACTTTATTTCAATACCTATATATTTTCCCTGGGTGTTTGAGTGTTGCTGGCCGTGCTTTACCCTCTCGAATAAGGTCCCGTGAGTGGGGACTTCAGTTCTTAGTTGCAAAATGAAATAACAAATTATGGTTATAGAATGAGTTACTGTAAATTTAATTTTCAACTGGTACAAGTCATTAGTTGATGATTGTGTGAGCAGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTCGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAA

mRNA sequence

ATGAGAGATGTTTCAAGGAACGATCGTTTTATCGGCTCAGAAGCTCGAAGTCTGTCTGAGGTTGCAGGTGTAGAAATAAAAGAATCTGAGTGCGAAGAATATGGCATTACTCTGATTCCACCAATTGATTTCATATGTGAAGAGGCTCCAAAGTCCTATGAAATCAAGACCAGCCGGGCTTATTTGTATGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTCGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAA

Coding sequence (CDS)

ATGAGAGATGTTTCAAGGAACGATCGTTTTATCGGCTCAGAAGCTCGAAGTCTGTCTGAGGTTGCAGGTGTAGAAATAAAAGAATCTGAGTGCGAAGAATATGGCATTACTCTGATTCCACCAATTGATTTCATATGTGAAGAGGCTCCAAAGTCCTATGAAATCAAGACCAGCCGGGCTTATTTGTATGGTGAAAGAATAGCTGTTCCATCCTGCACCATTTGGGTCAAACCCCAGAAGTCTATTCTGCATTTAATGAGAAAAGAAATGGGACTACGGTTGGTGCAATCAAGGCGACTCGAACTCTTTGAGGTTAAACTTCTCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTCGTACTATACTAAAGATTTCTACTGTATTCATCAATCTCATTTCTAGTACTATACTAAAGATTTCTACTGTATTCACCATCTCATTTCTAGCACCATACTAA

Protein sequence

MRDVSRNDRFIGSEARSLSEVAGVEIKESECEEYGITLIPPIDFICEEAPKSYEIKTSRAYLYGERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKISTVFINLISRTILKISTVFINLISSTILKISTVFTISFLAPY

Homology

[Close]

BLAST of Csor.00g094450 vs. NCBI nr
Match: KAG6580501.1 (hypothetical protein SDJN03_20503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293 bits (751), Expect = 1.07e-99
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MRDVSRNDRFIGSEARSLSEVAGVEIKESECEEYGITLIPPIDFICEEAPKSYEIKTSRA 60
           MRDVSRNDRFIGSEARSLSEVAGVEIKESECEEYGITLIPPIDFICEEAPKSYEIKTSRA
Sbjct: 1   MRDVSRNDRFIGSEARSLSEVAGVEIKESECEEYGITLIPPIDFICEEAPKSYEIKTSRA 60

Query: 61  YLYGERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKIST 120
           YLYGERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKIST
Sbjct: 61  YLYGERIAVPSCTIWVKPQKSILHLMRKEMGLRLVQSRRLELFEVKLLNLISSTILKIST 120

Query: 121 VFINLISRTILKISTVFINLISSTILKISTVFTISFLAPY 160
           VFINLISRTILKISTVFINLISSTILKISTVFTISFLAPY
Sbjct: 121 VFINLISRTILKISTVFINLISSTILKISTVFTISFLAPY 160

[Close]

BLAST of Csor.00g094450 vs. NCBI nr
Match: KAG7017252.1 (hypothetical protein SDJN02_19115, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158 bits (399), Expect = 5.41e-47
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 28  ESECEEYGITLIPPIDFICEEAPKSYEIKTSRAYLYGERIAVPSCTIWVKPQKSILHLMR 87
           ESECEEYGITLIPPIDFICEEAPKSYEIKTSRAYLYGERIAVPSCTIWVKPQKSILHLMR
Sbjct: 9   ESECEEYGITLIPPIDFICEEAPKSYEIKTSRAYLYGERIAVPSCTIWVKPQKSILHLMR 68

Query: 88  KEMGLRLVQSRRLELFE 104
           KEMGLRLVQSRRLELFE
Sbjct: 69  KEMGLRLVQSRRLELFE 85

The following BLAST results are available for this feature:

BLAST of Csor.00g094450 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g094450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580501.1	1.07e-99	100.00	hypothetical protein SDJN03_20503, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017252.1	5.41e-47	100.00	hypothetical protein SDJN02_19115, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g094450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g094450 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g094450.m01	Csor.00g094450.m01	mRNA