Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGAAGGTCTCACACAAGAAAGATTCCAAGGGAATCTGTAGTCAAGATGGCGGAAGCTAGAAGACAGATAGCTCAAGCTTTGCAACTTCACAGATCGTCGATGGCCTCTTCGTTTTCGACGACGATGTCTATGGCGGAACCCATTGGCTGCCAAGGCCGTGACTTTGAGAAAAAGCTCATGTTTTCAGGTTCGCAGCATTTTTGCTATTCGATATTGGAGTCTATGCCAGTTCCTCAACCGACATGGTCGACCACTGCACCTTCTGTGCTGCGTTCGCCAGAGGCCCCGATGGAAGAGCAGGAAATTTTTGAGTGGGGAGATGGGCAAGCTTCTTACGCTTGGTGGCTTGGATTTTTGAAGGCTTTGGATGTTGATAGCAGCAACGACACAGAGTATCCAAATGCAGGGAATGGAAATGCGGTGGGGATGAGTTCGATGGTGTTGACTCAGTGTCAGGATGGCTTGGAAAGTGGAGAAGCACTGTTTCTTGAAGCGAGTGACAACACCTCGTTTACAGATGAATGGTTGATAATTCCTATTGGTGAAGATGGGGGATTCATTGACAACAACTGCCTTGGGAATGATTTGGCATCTAACTAA
mRNA sequence
ATGAAAAGAAGGTCTCACACAAGAAAGATTCCAAGGGAATCTGTAGTCAAGATGGCGGAAGCTAGAAGACAGATAGCTCAAGCTTTGCAACTTCACAGATCGTCGATGGCCTCTTCGTTTTCGACGACGATGTCTATGGCGGAACCCATTGGCTGCCAAGGCCGTGACTTTGAGAAAAAGCTCATGTTTTCAGGTTCGCAGCATTTTTGCTATTCGATATTGGAGTCTATGCCAGTTCCTCAACCGACATGGTCGACCACTGCACCTTCTGTGCTGCGTTCGCCAGAGGCCCCGATGGAAGAGCAGGAAATTTTTGAGTGGGGAGATGGGCAAGCTTCTTACGCTTGGTGGCTTGGATTTTTGAAGGCTTTGGATGTTGATAGCAGCAACGACACAGAGTATCCAAATGCAGGGAATGGAAATGCGGTGGGGATGAGTTCGATGGTGTTGACTCAGTGTCAGGATGGCTTGGAAAGTGGAGAAGCACTGTTTCTTGAAGCGAGTGACAACACCTCGTTTACAGATGAATGGTTGATAATTCCTATTGGTGAAGATGGGGGATTCATTGACAACAACTGCCTTGGGAATGATTTGGCATCTAACTAA
Coding sequence (CDS)
ATGAAAAGAAGGTCTCACACAAGAAAGATTCCAAGGGAATCTGTAGTCAAGATGGCGGAAGCTAGAAGACAGATAGCTCAAGCTTTGCAACTTCACAGATCGTCGATGGCCTCTTCGTTTTCGACGACGATGTCTATGGCGGAACCCATTGGCTGCCAAGGCCGTGACTTTGAGAAAAAGCTCATGTTTTCAGGTTCGCAGCATTTTTGCTATTCGATATTGGAGTCTATGCCAGTTCCTCAACCGACATGGTCGACCACTGCACCTTCTGTGCTGCGTTCGCCAGAGGCCCCGATGGAAGAGCAGGAAATTTTTGAGTGGGGAGATGGGCAAGCTTCTTACGCTTGGTGGCTTGGATTTTTGAAGGCTTTGGATGTTGATAGCAGCAACGACACAGAGTATCCAAATGCAGGGAATGGAAATGCGGTGGGGATGAGTTCGATGGTGTTGACTCAGTGTCAGGATGGCTTGGAAAGTGGAGAAGCACTGTTTCTTGAAGCGAGTGACAACACCTCGTTTACAGATGAATGGTTGATAATTCCTATTGGTGAAGATGGGGGATTCATTGACAACAACTGCCTTGGGAATGATTTGGCATCTAACTAA
Protein sequence
MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLMFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLIIPIGEDGGFIDNNCLGNDLASN
Homology
BLAST of Csor.00g093840 vs. NCBI nr
Match:
KAG6580440.1 (hypothetical protein SDJN03_20442, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 405 bits (1040), Expect = 2.06e-142
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query: 1 MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKK 60
MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKK
Sbjct: 1 MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKK 60
Query: 61 LMFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGF 120
LMFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGF
Sbjct: 61 LMFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGF 120
Query: 121 LKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLII 180
LKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLII
Sbjct: 121 LKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLII 180
Query: 181 PIGEDGGFIDNNCLGNDLASN 201
PIGEDGGFIDNNCLGNDLASN
Sbjct: 181 PIGEDGGFIDNNCLGNDLASN 201
BLAST of Csor.00g093840 vs. NCBI nr
Match:
KGN58710.1 (hypothetical protein Csa_002623 [Cucumis sativus])
HSP 1 Score: 342 bits (877), Expect = 2.15e-117
Identity = 169/200 (84.50%), Postives = 183/200 (91.50%), Query Frame = 0
Query: 2 KRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKL 61
KRRSHTRK+P E+V+ MAEARRQIA+ALQLHRSS++SS STT SMAEP GC FEKK
Sbjct: 13 KRRSHTRKVPTEAVINMAEARRQIAEALQLHRSSLSSSSSTTTSMAEPSGCYVFQFEKKP 72
Query: 62 MFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGFL 121
+ SGSQHFCYSI+ESMPVPQPTWSTT PSV+RSP APMEEQEIFEWGDGQASYAWWLGFL
Sbjct: 73 IVSGSQHFCYSIMESMPVPQPTWSTTEPSVVRSPVAPMEEQEIFEWGDGQASYAWWLGFL 132
Query: 122 KALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLIIP 181
KALDV+ SNDTEY NAG+G+AVGMSSMVLT+CQDGLESGEALFLEASD+TS DEWLIIP
Sbjct: 133 KALDVNISNDTEYENAGSGSAVGMSSMVLTRCQDGLESGEALFLEASDHTSLADEWLIIP 192
Query: 182 IGEDGGFIDNNCLGNDLASN 201
IGEDGGFIDNNCLGNDLASN
Sbjct: 193 IGEDGGFIDNNCLGNDLASN 212
BLAST of Csor.00g093840 vs. NCBI nr
Match:
KAA0044211.1 (TPRXL protein [Cucumis melo var. makuwa])
HSP 1 Score: 323 bits (828), Expect = 2.90e-110
Identity = 159/189 (84.13%), Postives = 172/189 (91.01%), Query Frame = 0
Query: 13 ESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLMFSGSQHFCYS 72
E+V+ MAEARRQIA+ALQLHRSS++S+F TT SMAEP GC FEKK + SGSQHFCYS
Sbjct: 2 EAVINMAEARRQIAEALQLHRSSLSSTFPTTTSMAEPSGCYVFQFEKKPIVSGSQHFCYS 61
Query: 73 ILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGFLKALDVDSSNDT 132
I+ESMPVPQPTWSTT PSV+RSP APMEEQEIFEWGDGQASYAWWLGFLKALDV+SSN+T
Sbjct: 62 IMESMPVPQPTWSTTEPSVVRSPVAPMEEQEIFEWGDGQASYAWWLGFLKALDVNSSNET 121
Query: 133 EYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLIIPIGEDGGFIDNN 192
EY NA G+AVGMSSMVLTQCQDGLESGEALFLEASD+TS DEWLIIPIGEDGGFIDNN
Sbjct: 122 EYENARIGSAVGMSSMVLTQCQDGLESGEALFLEASDHTSLADEWLIIPIGEDGGFIDNN 181
Query: 193 CLGNDLASN 201
CLGNDLASN
Sbjct: 182 CLGNDLASN 190
BLAST of Csor.00g093840 vs. NCBI nr
Match:
CAN66732.1 (hypothetical protein VITISV_032666 [Vitis vinifera])
HSP 1 Score: 138 bits (348), Expect = 4.33e-37
Identity = 81/190 (42.63%), Postives = 121/190 (63.68%), Query Frame = 0
Query: 1 MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKK 60
++RRS +R+ + S + +AEARR++A AL LHRSS +S +S + S + +K
Sbjct: 16 IRRRSSSRRASQSSFINVAEARREVASALNLHRSS-SSPYSPSASSRRS-SYNYKYGIRK 75
Query: 61 LMFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEA----PMEEQEIFEWGDG-QASYA 120
+G Q+ CYS+LE++P+P+PTWSTT P++ +P P+ E FEW + ASYA
Sbjct: 76 ATVAGPQYCCYSLLETLPLPEPTWSTTPPAIFAAPSIVATPPLLEAIEFEWEESFTASYA 135
Query: 121 WWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTD 180
WWLGFLK+LD S+ +++YP N V +S + Q QDG + GE+ L+A+D +S+ D
Sbjct: 136 WWLGFLKSLDGKSAEESKYPFEEN--VVMRNSWLFGQRQDGPKQGESPCLDANDQSSYLD 195
Query: 181 EWLIIPIGED 185
EWL+IP ED
Sbjct: 196 EWLMIPPTED 201
BLAST of Csor.00g093840 vs. NCBI nr
Match:
EOY07033.1 (Uncharacterized protein TCM_021567 [Theobroma cacao])
HSP 1 Score: 138 bits (347), Expect = 4.89e-37
Identity = 85/194 (43.81%), Postives = 116/194 (59.79%), Query Frame = 0
Query: 1 MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKK 60
++RRSHTRKI + SV+ MAEARR+IA AL LHRSS +SS S++ + + ++ E
Sbjct: 14 IRRRSHTRKIAQGSVINMAEARREIAHALHLHRSSSSSSSSSSSTSTKTQSYVAQEREPW 73
Query: 61 LMFS------GSQHFCYSILES--MPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQA 120
++ + S + CYS+ E+ MPVP P WSTT PSV +P E E FEWG+ +A
Sbjct: 74 MLGNTTKPTLASSYCCYSLAEALPMPVPDPVWSTTEPSVPAAPSG-SEAMEFFEWGENEA 133
Query: 121 S-YAWWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNT 180
S Y WWL FL+ALDV++ TE+P A N + +SMVL + F+ ASD
Sbjct: 134 SSYTWWLAFLRALDVNNVQKTEHPFADN--VMKENSMVLEKQASSEIEKATTFVGASDQN 193
Query: 181 SFTDEWLIIPIGED 185
+ DEWL+ P ED
Sbjct: 194 ASLDEWLMFPTTED 204
BLAST of Csor.00g093840 vs. ExPASy TrEMBL
Match:
A0A0A0L9R9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730740 PE=4 SV=1)
HSP 1 Score: 342 bits (877), Expect = 1.04e-117
Identity = 169/200 (84.50%), Postives = 183/200 (91.50%), Query Frame = 0
Query: 2 KRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKL 61
KRRSHTRK+P E+V+ MAEARRQIA+ALQLHRSS++SS STT SMAEP GC FEKK
Sbjct: 13 KRRSHTRKVPTEAVINMAEARRQIAEALQLHRSSLSSSSSTTTSMAEPSGCYVFQFEKKP 72
Query: 62 MFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGFL 121
+ SGSQHFCYSI+ESMPVPQPTWSTT PSV+RSP APMEEQEIFEWGDGQASYAWWLGFL
Sbjct: 73 IVSGSQHFCYSIMESMPVPQPTWSTTEPSVVRSPVAPMEEQEIFEWGDGQASYAWWLGFL 132
Query: 122 KALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLIIP 181
KALDV+ SNDTEY NAG+G+AVGMSSMVLT+CQDGLESGEALFLEASD+TS DEWLIIP
Sbjct: 133 KALDVNISNDTEYENAGSGSAVGMSSMVLTRCQDGLESGEALFLEASDHTSLADEWLIIP 192
Query: 182 IGEDGGFIDNNCLGNDLASN 201
IGEDGGFIDNNCLGNDLASN
Sbjct: 193 IGEDGGFIDNNCLGNDLASN 212
BLAST of Csor.00g093840 vs. ExPASy TrEMBL
Match:
A0A5A7TRK0 (TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005700 PE=4 SV=1)
HSP 1 Score: 323 bits (828), Expect = 1.41e-110
Identity = 159/189 (84.13%), Postives = 172/189 (91.01%), Query Frame = 0
Query: 13 ESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLMFSGSQHFCYS 72
E+V+ MAEARRQIA+ALQLHRSS++S+F TT SMAEP GC FEKK + SGSQHFCYS
Sbjct: 2 EAVINMAEARRQIAEALQLHRSSLSSTFPTTTSMAEPSGCYVFQFEKKPIVSGSQHFCYS 61
Query: 73 ILESMPVPQPTWSTTAPSVLRSPEAPMEEQEIFEWGDGQASYAWWLGFLKALDVDSSNDT 132
I+ESMPVPQPTWSTT PSV+RSP APMEEQEIFEWGDGQASYAWWLGFLKALDV+SSN+T
Sbjct: 62 IMESMPVPQPTWSTTEPSVVRSPVAPMEEQEIFEWGDGQASYAWWLGFLKALDVNSSNET 121
Query: 133 EYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTDEWLIIPIGEDGGFIDNN 192
EY NA G+AVGMSSMVLTQCQDGLESGEALFLEASD+TS DEWLIIPIGEDGGFIDNN
Sbjct: 122 EYENARIGSAVGMSSMVLTQCQDGLESGEALFLEASDHTSLADEWLIIPIGEDGGFIDNN 181
Query: 193 CLGNDLASN 201
CLGNDLASN
Sbjct: 182 CLGNDLASN 190
BLAST of Csor.00g093840 vs. ExPASy TrEMBL
Match:
A0A2N9GPB2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32169 PE=4 SV=1)
HSP 1 Score: 140 bits (354), Expect = 1.05e-38
Identity = 88/200 (44.00%), Postives = 124/200 (62.00%), Query Frame = 0
Query: 3 RRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLM 62
RR HTRK ++ V+ M +ARR+IA ALQLHRSS +S+ +TT+ G +F +
Sbjct: 2 RRRHTRKASQDCVINMVKARREIAHALQLHRSSSSSTTTTTL---------GNNFNYDFI 61
Query: 63 ---FSGSQHFCYSILESM--PVPQPTWSTTAPSVLRSPEAP----MEEQEIFEWGDG-QA 122
F+G+Q +CYS++ESM P+P+P WSTTAPS+L +P P ME E FEWG+ QA
Sbjct: 62 RPSFAGTQ-YCYSLMESMTMPIPEPIWSTTAPSILAAPPPPPVPAMEALE-FEWGENNQA 121
Query: 123 SYAWWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTS 182
S+ WWLGFL+ LD + + +YP +G S +V +Q + + GE F++ SD +
Sbjct: 122 SHTWWLGFLQTLDSKYNEEPKYP-------LGNSRIVFSQ--EAPKLGEPPFVDESDQSG 181
Query: 183 FTDEWLIIPIGEDGGFIDNN 192
F DEWLI P ED G + N+
Sbjct: 182 FPDEWLIFPTTEDQGEVVNS 181
BLAST of Csor.00g093840 vs. ExPASy TrEMBL
Match:
A0A2N9G9P4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24097 PE=4 SV=1)
HSP 1 Score: 139 bits (350), Expect = 4.34e-38
Identity = 88/200 (44.00%), Postives = 123/200 (61.50%), Query Frame = 0
Query: 3 RRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKKLM 62
RR HTRK ++ V+ M +ARR+IA ALQLHRSS +S+ +TT G +F +
Sbjct: 2 RRRHTRKASQDCVINMVKARREIAHALQLHRSSSSSTTTTTTL--------GNNFNYDFI 61
Query: 63 ---FSGSQHFCYSILESM--PVPQPTWSTTAPSVLRSPEAP----MEEQEIFEWGDG-QA 122
F+G+Q +CYS++ESM P+P+P WSTTAPS+L +P P ME E FEWG+ QA
Sbjct: 62 RPSFAGTQ-YCYSLMESMTMPIPEPIWSTTAPSILAAPPPPPVPAMEALE-FEWGENNQA 121
Query: 123 SYAWWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTS 182
S+ WWLGFL+ LD + + +YP +G S +V +Q + + GE F++ SD +
Sbjct: 122 SHTWWLGFLQTLDSKYNEEPKYP-------LGNSRIVFSQ--EAPKLGEPPFVDESDQSG 181
Query: 183 FTDEWLIIPIGEDGGFIDNN 192
F DEWLI P ED G + N+
Sbjct: 182 FPDEWLIFPTTEDQGEVVNS 182
BLAST of Csor.00g093840 vs. ExPASy TrEMBL
Match:
A5AGY2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032666 PE=4 SV=1)
HSP 1 Score: 138 bits (348), Expect = 2.09e-37
Identity = 81/190 (42.63%), Postives = 121/190 (63.68%), Query Frame = 0
Query: 1 MKRRSHTRKIPRESVVKMAEARRQIAQALQLHRSSMASSFSTTMSMAEPIGCQGRDFEKK 60
++RRS +R+ + S + +AEARR++A AL LHRSS +S +S + S + +K
Sbjct: 16 IRRRSSSRRASQSSFINVAEARREVASALNLHRSS-SSPYSPSASSRRS-SYNYKYGIRK 75
Query: 61 LMFSGSQHFCYSILESMPVPQPTWSTTAPSVLRSPEA----PMEEQEIFEWGDG-QASYA 120
+G Q+ CYS+LE++P+P+PTWSTT P++ +P P+ E FEW + ASYA
Sbjct: 76 ATVAGPQYCCYSLLETLPLPEPTWSTTPPAIFAAPSIVATPPLLEAIEFEWEESFTASYA 135
Query: 121 WWLGFLKALDVDSSNDTEYPNAGNGNAVGMSSMVLTQCQDGLESGEALFLEASDNTSFTD 180
WWLGFLK+LD S+ +++YP N V +S + Q QDG + GE+ L+A+D +S+ D
Sbjct: 136 WWLGFLKSLDGKSAEESKYPFEEN--VVMRNSWLFGQRQDGPKQGESPCLDANDQSSYLD 195
Query: 181 EWLIIPIGED 185
EWL+IP ED
Sbjct: 196 EWLMIPPTED 201
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6580440.1 | 2.06e-142 | 100.00 | hypothetical protein SDJN03_20442, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN58710.1 | 2.15e-117 | 84.50 | hypothetical protein Csa_002623 [Cucumis sativus] | [more] |
KAA0044211.1 | 2.90e-110 | 84.13 | TPRXL protein [Cucumis melo var. makuwa] | [more] |
CAN66732.1 | 4.33e-37 | 42.63 | hypothetical protein VITISV_032666 [Vitis vinifera] | [more] |
EOY07033.1 | 4.89e-37 | 43.81 | Uncharacterized protein TCM_021567 [Theobroma cacao] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0L9R9 | 1.04e-117 | 84.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730740 PE=4 SV=1 | [more] |
A0A5A7TRK0 | 1.41e-110 | 84.13 | TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005700... | [more] |
A0A2N9GPB2 | 1.05e-38 | 44.00 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS32169 PE=4 SV=1 | [more] |
A0A2N9G9P4 | 4.34e-38 | 44.00 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24097 PE=4 SV=1 | [more] |
A5AGY2 | 2.09e-37 | 42.63 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032666 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |