Csor.00g091610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g091610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 2183611 .. 2186014 (-)
RNA-Seq Expression	Csor.00g091610
Synteny	Csor.00g091610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCGTCTCTGCAGTTTATTTTCTGGGTCTCGGCGGAGCTGAAGGTAGCGGCTGCGGCGTAGATAGGAGGTCCGGAGATTTGCCTGTTTTGATTCCAAAAGAAATGAGTATGAAGAAGGTAATGGTGTTCAGTGAAGGTAGAAATTTGTTGTATTGGTTTTTTGTCCTTCGTTGAAGATCAGATCATTTGCAGTGGTGATATTGGCGGAGACGGCTCAATCTCTGGTTTTTACTAATTCCTCTCTTTTTCACTAAAAAATACATTATTTGTTATGTTGATACAAGGAATGCATCTGTAAATTTTCCCATGAAATATGTTCAAGGGCTGATTTGGGATTCTCTTGTTTCTTCTCCTGTCTTTGTAGCGCTACCAATTAGCTTGTTGCTTTAGTATATCATCATCTTTTGAAGCAAACCCTTTGAGGGGGAAGCATCAAGTTAAAGGTGCCTTACTTAAGCAGGCTCTTCTTCAATGTGTTTCATTTGAAAAGTAAGAACATCATGTCAGAAATTTGCAATTCTTTTTCTTTCTATGTCTGTGTGTCTGCTTCATAAACTAATGATTTTCCTCGAGAAGTGCGAGATTTGACAATTCATATTGGAATTGTGCAGAAACAATGAACATAATTTTTGAAGCTCGATAATGGGTAAGAATGTATGTTTTTTAGTAAATTTCTTCCTAATTGTTGTAAATTTGAAGCCACTGAGCTTGTCCATGGAGGGGTCTTATCAGATGTGTGTCACCTGCGACGCTCTCATGGGGGACTTTTTCGGAATTTTCTTTTTTCTTTTTTCTTTCTCGGAAGAATTGGGGTTTCCATTGCTTTGGTGGGGTTGTCACCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTTTACTTTCCTAAAATTCTTCCAATTTTCTGATTTTCCTAGTAAAGGGTTTTAGTCTATAATATTGGTTTTATTTTTTTAATTTAATCTCGTATTTTATTAGTTTTTACTTTGTAGTATTATTGTTAGTTTAGGCCTAAGTTGATAAATTCATTACCTATTTAGTTTTTTGAAAATTGTTTTTTTTTTTTTTTTATCATATATTCATAAATTCATTTTGCTTAGAAAAATTTTCAATTTCCAACCCAATTATAAAAATAAAAACAAGCTTTTTAAAATTATATATATTTATTTATTAGGTGCAAGTGTATATATATATATAGATAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGTTTTTGGAAATATTTTGTTTTTGGGCCTTGACTTCGGAAACCATGAAGAATATGGCCCACTCACTTTGGGTGAGATGGGCTGAATTGATGAAGAGTCAAAAGTAATAATGATGGTTATTATGGGCCTAAAGCCCAAGAAGATGAAAGCAAAGCCCTTTTAAGTACTAATTTATCCACCAAGTGATATTGGGCTATCACATATGGAACGCATCAAATAATATTATAATTATTAAAGCTATGCCGAAAAGTAATGGGCACATAGAGCGGGGCCCAAAAGCTGAGAAAGGTTAAGGCACGGCTGCCTCACTTTTCTCTTTTAACTTTTATCTCTATCTTTGTGTAGGGAAAAAAAGAAAAAGAAAAAGAAAAATAAGCAAATAAGAAGCAAAGAAAAAGTGAAGAGAAAAAAAAAAGGTCACAAAAAAAAGAGAGACTCTGTTTCGGAAAAATAAAAATAAAAGCCATAGCTGATATGTTTAAAGTAGACAATATCATATTGTTATGAAAATATATGAATGATCATCATATCATTGTCTTTAACAATTGGAATTAAAGTTACTTATCGCTCACCTAAATCAAATACGCCCTAATCTTTCACAAATGCAAATAGAAATAATGGTTGTGGCATTGGCGTTATGACATTCTAAATTTGTAAAAGAGGACGAGTTTTAATGGGTTGAATCTGGTAGGAGCATGTAGAATAAAAGTTGTTGGGACTTCCCAAAATTGTGATTGTGAAAGAAGAGGAGTTTTATGGTGTTGGTGTGATGATGTGGGTGTTGACATTATGAGAGCCCGAAAGGCAGAATAAGCGAAGTGGGTTTCATTACATTGGAGGGTTGATGGTTGGTGTTGGAGTGTGCATGCAATAGCAATAGCAATAGCAATAGCAATGGCAATGGCAATGGCAATGGCAATACTCTCTACAGAATGGTTTGTGAGAAAGGCAAAGGCAGAGAGAGGCATTTGGTTAATTCAGAAGAAATGTTGCATTATGGAGTTTGCAGCAGCAGACCAAGCAGAGTGTCGTTGACAGACACAGACTGCTCACTTCCCCAATTGGAGTGGGAGAAGATGGGATATATGACCCTTTGA

mRNA sequence

ATGTGCGTCTCTGCAGTTTATTTTCTGGGTCTCGGCGGAGCTGAAGGTAGCGGCTGCGGCGTAGATAGGAGGTCCGGAGATTTGCCTGTTTTGATTCCAAAAGAAATGAGTATGAAGAAGCGCTACCAATTAGCTTGTTGCTTTAGTATATCATCATCTTTTGAAGCAAACCCTTTGAGGGGGAAGCATCAAGTTAAAGGTGCCTTACTTAAGCAGGCTCTTCTTCAATGTGTTTCATTTGAAAACAATAGCAATAGCAATAGCAATGGCAATGGCAATGGCAATGGCAATACTCTCTACAGAATGGTTTGTGAGAAAGGCAAAGGCAGAGAGAGGCATTTGGTTAATTCAGAAGAAATGTTGCATTATGGAGTTTGCAGCAGCAGACCAAGCAGAGTGTCGTTGACAGACACAGACTGCTCACTTCCCCAATTGGAGTGGGAGAAGATGGGATATATGACCCTTTGA

Coding sequence (CDS)

ATGTGCGTCTCTGCAGTTTATTTTCTGGGTCTCGGCGGAGCTGAAGGTAGCGGCTGCGGCGTAGATAGGAGGTCCGGAGATTTGCCTGTTTTGATTCCAAAAGAAATGAGTATGAAGAAGCGCTACCAATTAGCTTGTTGCTTTAGTATATCATCATCTTTTGAAGCAAACCCTTTGAGGGGGAAGCATCAAGTTAAAGGTGCCTTACTTAAGCAGGCTCTTCTTCAATGTGTTTCATTTGAAAACAATAGCAATAGCAATAGCAATGGCAATGGCAATGGCAATGGCAATACTCTCTACAGAATGGTTTGTGAGAAAGGCAAAGGCAGAGAGAGGCATTTGGTTAATTCAGAAGAAATGTTGCATTATGGAGTTTGCAGCAGCAGACCAAGCAGAGTGTCGTTGACAGACACAGACTGCTCACTTCCCCAATTGGAGTGGGAGAAGATGGGATATATGACCCTTTGA

Protein sequence

MCVSAVYFLGLGGAEGSGCGVDRRSGDLPVLIPKEMSMKKRYQLACCFSISSSFEANPLRGKHQVKGALLKQALLQCVSFENNSNSNSNGNGNGNGNTLYRMVCEKGKGRERHLVNSEEMLHYGVCSSRPSRVSLTDTDCSLPQLEWEKMGYMTL

Homology

[Close]

BLAST of Csor.00g091610 vs. NCBI nr
Match: KAG6587795.1 (hypothetical protein SDJN03_16360, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 318 bits (815), Expect = 1.28e-109
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MCVSAVYFLGLGGAEGSGCGVDRRSGDLPVLIPKEMSMKKRYQLACCFSISSSFEANPLR 60
           MCVSAVYFLGLGGAEGSGCGVDRRSGDLPVLIPKEMSMKKRYQLACCFSISSSFEANPLR
Sbjct: 1   MCVSAVYFLGLGGAEGSGCGVDRRSGDLPVLIPKEMSMKKRYQLACCFSISSSFEANPLR 60

Query: 61  GKHQVKGALLKQALLQCVSFENNSNSNSNGNGNGNGNTLYRMVCEKGKGRERHLVNSEEM 120
           GKHQVKGALLKQALLQCVSFENNSNSNSNGNGNGNGNTLYRMVCEKGKGRERHLVNSEEM
Sbjct: 61  GKHQVKGALLKQALLQCVSFENNSNSNSNGNGNGNGNTLYRMVCEKGKGRERHLVNSEEM 120

Query: 121 LHYGVCSSRPSRVSLTDTDCSLPQLEWEKMGYMTL 155
           LHYGVCSSRPSRVSLTDTDCSLPQLEWEKMGYMTL
Sbjct: 121 LHYGVCSSRPSRVSLTDTDCSLPQLEWEKMGYMTL 155

The following BLAST results are available for this feature:

BLAST of Csor.00g091610 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g091610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587795.1	1.28e-109	100.00	hypothetical protein SDJN03_16360, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g091610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g091610 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g091610.m01	Csor.00g091610.m01	mRNA