Csor.00g091000 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g091000
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	E3 ubiquitin-protein ligase RNF12-B-like isoform X1
Location	Csor_Chr11: 2423763 .. 2424376 (-)
RNA-Seq Expression	Csor.00g091000
Synteny	Csor.00g091000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGCTGAAGCACTATTTGAGGTACTTTTTTGAGTTCCAAGTGCTGTGTAATTCAACAGGTATCTCACATCTTGTTCTTTGTGTATCTAAAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAGTAGGTTCCCTCTTTTCGTTAACCAAGTACTCTTGTTTAGTTTCTAATGTGGGATTGTTTACAAATGCTTGGTTAGATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGGTATGTTGTGCCTATACATCATCAATTACTGCTCCCTTTTTATCTATTTTATGTCTAGGTATCATTTTACTCATGGATTCATCTCCCTGTATCACTGTGTTTAACAGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGA

mRNA sequence

ATGCTTGCTGAAGCACTATTTGAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGA

Coding sequence (CDS)

ATGCTTGCTGAAGCACTATTTGAGGTCTTGGATGAAATTCATGGTCAGCCTGTTTCTCTTGCTCTATCCATGGTTTCACTGCCTGCACCAGAATCAGTTGTTGACTCTTTTCCTTTGAAGAACCACGAAAAGAAAACTAATGGAGGGGATGAAATTGAGCAATGCTACATTTGCCTTGCCGATTACGAAGACGGTGACAAAATAAGAGTCCTTCCTTGCCACCACGAGTATCATATGTCGTGCGTCGATAAATGGTTGAAGGAGATTCATGGAGTATGCCCACTTTGTAGAGGGGATGTTCGTGCAGGCACGAACGATGAATGTTCGATTTCAAACTTGGAAATTCCAACGACAATTTGA

Protein sequence

MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI

Homology

[Close]

BLAST of Csor.00g091000 vs. ExPASy Swiss-Prot
Match: Q91XF4 (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.9e-16
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 49  GDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 108
           GDE + C ICL +YEDGDK+RVLPC H YH  CVD WL +    CP+C+  V  G  DE
Sbjct: 224 GDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDE 282

[Close]

BLAST of Csor.00g091000 vs. ExPASy Swiss-Prot
Match: Q5XIL0 (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-15
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 49  GDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 108
           GDE + C ICL +YEDGDK+R+LPC H YH  CVD WL +    CP+C+  V  G  DE
Sbjct: 224 GDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDE 282

[Close]

BLAST of Csor.00g091000 vs. ExPASy Swiss-Prot
Match: Q9H6Y7 (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.2e-15
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 49  GDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 108
           GD+ + C ICL +YEDGDK+RVLPC H YH  CVD WL +    CP+C+  V  G  DE
Sbjct: 224 GDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDE 282

[Close]

BLAST of Csor.00g091000 vs. ExPASy Swiss-Prot
Match: O54965 (E3 ubiquitin-protein ligase RNF13 OS=Mus musculus OX=10090 GN=Rnf13 PE=1 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 45  KTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGT 104
           K   GDE + C ICL +YEDGDK+R+LPC H YH  CVD WL +    CP+C+  V    
Sbjct: 230 KFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289

Query: 105 NDECS 110
            D  S
Sbjct: 290 GDSDS 294

[Close]

BLAST of Csor.00g091000 vs. ExPASy Swiss-Prot
Match: Q66HG0 (E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus OX=10116 GN=Rnf13 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-14
Identity = 32/65 (49.23%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 45  KTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGT 104
           K   GDE + C ICL +YEDGDK+R+LPC H YH  CVD WL +    CP+C+  V    
Sbjct: 230 KFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQ 289

Query: 105 NDECS 110
            D  S
Sbjct: 290 GDSDS 294

[Close]

BLAST of Csor.00g091000 vs. NCBI nr
Match: KAG6587856.1 (E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253 bits (646), Expect = 5.14e-85
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI
Sbjct: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119

[Close]

BLAST of Csor.00g091000 vs. NCBI nr
Match: XP_022932122.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 253 bits (646), Expect = 6.44e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 382 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 441

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI
Sbjct: 442 DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 500

[Close]

BLAST of Csor.00g091000 vs. NCBI nr
Match: KAG7021745.1 (E3 ubiquitin-protein ligase-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253 bits (646), Expect = 6.78e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 384 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 443

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI
Sbjct: 444 DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 502

[Close]

BLAST of Csor.00g091000 vs. NCBI nr
Match: XP_022932117.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 253 bits (646), Expect = 6.78e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 384 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 443

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI
Sbjct: 444 DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 502

[Close]

BLAST of Csor.00g091000 vs. NCBI nr
Match: XP_023530450.1 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250 bits (638), Expect = 1.02e-78
Identity = 117/119 (98.32%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 382 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 441

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAG+NDECSISNLEIPT+I
Sbjct: 442 DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGSNDECSISNLEIPTSI 500

[Close]

BLAST of Csor.00g091000 vs. ExPASy TrEMBL
Match: A0A6J1EVS0 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111438424 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 3.12e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 382 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 441

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI
Sbjct: 442 DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 500

[Close]

BLAST of Csor.00g091000 vs. ExPASy TrEMBL
Match: A0A6J1EVR4 (E3 ubiquitin-protein ligase RNF12-B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438424 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 3.28e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 384 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 443

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI
Sbjct: 444 DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 502

[Close]

BLAST of Csor.00g091000 vs. ExPASy TrEMBL
Match: A0A6J1KJ55 (E3 ubiquitin-protein ligase RNF12-A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111495681 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 1.61e-77
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 343 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 402

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYE+GDKIRVLPC HEYHMSCVDKWLKEIHGVCPLCRGDVRAG+NDECSISNLEIP TI
Sbjct: 403 DYEEGDKIRVLPCRHEYHMSCVDKWLKEIHGVCPLCRGDVRAGSNDECSISNLEIPATI 461

[Close]

BLAST of Csor.00g091000 vs. ExPASy TrEMBL
Match: A0A6J1KH21 (E3 ubiquitin-protein ligase RNF12-B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495681 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 4.39e-77
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 382 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 441

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYE+GDKIRVLPC HEYHMSCVDKWLKEIHGVCPLCRGDVRAG+NDECSISNLEIP TI
Sbjct: 442 DYEEGDKIRVLPCRHEYHMSCVDKWLKEIHGVCPLCRGDVRAGSNDECSISNLEIPATI 500

[Close]

BLAST of Csor.00g091000 vs. ExPASy TrEMBL
Match: A0A6J1KLN3 (E3 ubiquitin-protein ligase RNF12-A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495681 PE=4 SV=1)

HSP 1 Score: 245 bits (625), Expect = 4.62e-77
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 60
           MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA
Sbjct: 384 MLAEALFEVLDEIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLA 443

Query: 61  DYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDECSISNLEIPTTI 119
           DYE+GDKIRVLPC HEYHMSCVDKWLKEIHGVCPLCRGDVRAG+NDECSISNLEIP TI
Sbjct: 444 DYEEGDKIRVLPCRHEYHMSCVDKWLKEIHGVCPLCRGDVRAGSNDECSISNLEIPATI 502

[Close]

BLAST of Csor.00g091000 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-31
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLA------LSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQ 60
           +LAEALFEVLDEIH Q V L+       S+ S+PAP  VVD  P+K + K  +  ++  Q
Sbjct: 432 LLAEALFEVLDEIHQQSVVLSSQQPSVSSIGSVPAPNDVVDLLPIKLYTKSQS--EDPSQ 491

Query: 61  CYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDV 101
           CYICL +YE+ D IR LPCHHE+H +CVDKWLKEIH VCPLCRGD+
Sbjct: 492 CYICLVEYEEADSIRTLPCHHEFHKTCVDKWLKEIHRVCPLCRGDI 535

[Close]

BLAST of Csor.00g091000 vs. TAIR 10
Match: AT5G45290.2 (RING/U-box superfamily protein )

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-30
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 0


Query: 1   MLAEALFEVLDEIHGQPVSLA------LSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQ 60
           +LAEALFEVLDEIH Q V L+       S+ S+PAP  VVD  P+K + K  +  ++  Q
Sbjct: 432 LLAEALFEVLDEIHQQSVVLSSQQPSVSSIGSVPAPNDVVDLLPIKLYTKSQS--EDPSQ 491

Query: 61  CYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHG-VCPLCRGDV 101
           CYICL +YE+ D IR LPCHHE+H +CVDKWLKEIH  VCPLCRGD+
Sbjct: 492 CYICLVEYEEADSIRTLPCHHEFHKTCVDKWLKEIHSRVCPLCRGDI 536

[Close]

BLAST of Csor.00g091000 vs. TAIR 10
Match: AT4G09560.1 (Protease-associated (PA) RING/U-box zinc finger family protein )

HSP 1 Score: 77.4 bits (189), Expect = 8.6e-15
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 55  CYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTNDE 108
           C ICL +YE GDK+R+LPCHH++H++CVD WL +    CP+C+ D R+ + D+
Sbjct: 234 CCICLENYEKGDKLRILPCHHKFHVACVDLWLGQRKSFCPVCKRDARSISTDK 286

[Close]

BLAST of Csor.00g091000 vs. TAIR 10
Match: AT1G71980.1 (Protease-associated (PA) RING/U-box zinc finger family protein )

HSP 1 Score: 73.9 bits (180), Expect = 9.5e-14
Identity = 38/95 (40.00%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 12  EIHGQPVSLALSMVSLPAPESVVDSFPLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVL 71
           E HG    L  +M SL     +  SF    HE  T        C ICL DY  GDK+R+L
Sbjct: 202 EFHGMSRRLVKAMPSL-----IFSSF----HEDNTTA----FTCAICLEDYTVGDKLRLL 261

Query: 72  PCHHEYHMSCVDKWLKEIHGVCPLCRGDVRAGTND 107
           PC H++H +CVD WL      CP+C+ D R  T +
Sbjct: 262 PCCHKFHAACVDSWLTSWRTFCPVCKRDARTSTGE 283

[Close]

BLAST of Csor.00g091000 vs. TAIR 10
Match: AT3G19910.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.8e-13
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 34  VDSFPLKNHEKKTNGGDEIEQCYICLADYEDGDKIRVLPCHHEYHMSCVDKWLKEIHGVC 93
           + S P K +++  N     E C IC  DYED + + +LPC H YH  C++ WLK I+ VC
Sbjct: 267 IASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLK-INKVC 326

Query: 94  PLCRGDVRAGTNDE 108
           P+C  +V   T+ +
Sbjct: 327 PVCSAEVSTSTSGQ 339

The following BLAST results are available for this feature:

BLAST of Csor.00g091000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91XF4	9.9e-16	55.93	E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1	[more]
Q5XIL0	1.3e-15	54.24	E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 ...	[more]
Q9H6Y7	2.2e-15	54.24	E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1	[more]
O54965	3.2e-14	49.23	E3 ubiquitin-protein ligase RNF13 OS=Mus musculus OX=10090 GN=Rnf13 PE=1 SV=2	[more]
Q66HG0	3.2e-14	49.23	E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus OX=10116 GN=Rnf13 PE=2 SV...	[more]

BLAST of Csor.00g091000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587856.1	5.14e-85	100.00	E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022932122.1	6.44e-80	100.00	E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita moschata]	[more]
KAG7021745.1	6.78e-80	100.00	E3 ubiquitin-protein ligase-like protein [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022932117.1	6.78e-80	100.00	E3 ubiquitin-protein ligase RNF12-B-like isoform X1 [Cucurbita moschata]	[more]
XP_023530450.1	1.02e-78	98.32	E3 ubiquitin-protein ligase RNF12-B-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g091000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVS0	3.12e-80	100.00	E3 ubiquitin-protein ligase RNF12-B-like isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A6J1EVR4	3.28e-80	100.00	E3 ubiquitin-protein ligase RNF12-B-like isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1KJ55	1.61e-77	96.64	E3 ubiquitin-protein ligase RNF12-A-like isoform X3 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1KH21	4.39e-77	96.64	E3 ubiquitin-protein ligase RNF12-B-like isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1KLN3	4.62e-77	96.64	E3 ubiquitin-protein ligase RNF12-A-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Csor.00g091000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45290.1	1.7e-31	59.43	RING/U-box superfamily protein	[more]
AT5G45290.2	2.5e-30	58.88	RING/U-box superfamily protein	[more]
AT4G09560.1	8.6e-15	50.94	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT1G71980.1	9.5e-14	40.00	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT3G19910.1	2.8e-13	39.19	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 55..96 e-value: 2.3E-6 score: 37.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 54..97 e-value: 4.5E-12 score: 46.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 55..97 score: 12.459772
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 22..104 e-value: 8.2E-22 score: 78.7
None	No IPR available	PANTHER	PTHR47168	RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED	coord: 1..116
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 54..97 e-value: 3.10826E-18 score: 69.9481
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 40..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g091000.m01	Csor.00g091000.m01	mRNA