Csor.00g090060 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g090060
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGolgin subfamily A member 4
LocationCsor_Chr11: 2918648 .. 2920294 (-)
RNA-Seq ExpressionCsor.00g090060
SyntenyCsor.00g090060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGTCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTTCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCCGTCGGCGAGCACAAGCACCGCACCTTCGCCGACCCACCGCCACTGCTGCTACTCCCAGCCGCTGATGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATGTGGGTAACACATTTTTTCTTCTTTTCTTCTGTCCCTTTTAATCTTGGTTTTGGTATTTGGTTTATGATGGATTGTCTTGCTGGGAGTGAAGAGAAAAGAATATGTGGAATTGGAGTTTTTATATAAGAGAAAAAATTAAAAGCATGTTTTGAAAACATTAAAAACAAAGGCCTGCCTTATAGATAATATCATACTATTTTGTAGAGTCGTGGTTCCTAACAATTACTTAGGAGTGCTATATTATTCATTGCCCTTTGCTTGAATGATGGGCCAAAGTTCACGAAAGAATCTAATTCTTCCTCCTACATGAAAAGAAAAGGTTTTTTTTTCCTCCAACTTTTTCTTTCCCTTCTTTCATGCAATGCAAAAGGAATCATTGGAGAATAAAGAGAGAAAGTATAACATAATTGAGTGTGGGAGTACCAAAGCTTGCCACTTCATGGGTTCCATGGCAAACCCAAAGCTCTATTCTAGTATCTAAGTTGGGCGTGGAATTGTAGAGTGGGGTTTTCCCGGTCATTGCTGAGTGGTTTCCTACTCACATTCTTTAACCAAATGTGTGGTTTATTGTTTTCGTGGTTTGTTGTTTTGCATGAAACAAATGTGTTGTCGGAATCTTGAATTCATCCACAAACAAACACTCCACTTTATTAGCATCACTTTATTCAGGATTTCTCGTCTTCATTTGAATGAAACAAACCTCCATTCCTCATTTTCATTTCTTAAACATGTTAAATAAGAAGTAAGATTAGATGATGTTGGTAATTAATTAATTAATTAATTAAGCCATCATTAAAGTTTGACCGATTGGATATAAGAATAATTGAAAATTTTGGTGTCACATGGAAGATGGTTGATAATTCAAGAAATCCCCACCCTCCCATTCACATGTGGATGCATTGCAGCATATGGAAATGGATCCACAAAATCCGGACTTCATTTTAACATATAACTCCGTTCGTATACCAAACTCAAATCATCTGGCAGCTTTGATGATGGGAAAGAAGAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGGTGTTATGGAGGAAACTGAGAAGAGAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTGATTCCTTATGATCCTTTCTCTTATTCACACAATTTCGACCAAGGCAACGCTGCCGAAGAGCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

mRNA sequence

ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGTCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTTCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCCGTCGGCGAGCACAAGCACCGCACCTTCGCCGACCCACCGCCACTGCTGCTACTCCCAGCCGCTGATGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATCATATGGAAATGGATCCACAAAATCCGGACTTCATTTTAACATATAACTCCGTTCGTATACCAAACTCAAATCATCTGGCAGCTTTGATGATGGGAAAGAAGAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGGTGTTATGGAGGAAACTGAGAAGAGAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTGATTCCTTATGATCCTTTCTCTTATTCACACAATTTCGACCAAGGCAACGCTGCCGAAGAGCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

Coding sequence (CDS)

ATGGAGAGCTTACGACTTCAAAATGGACGGATTTCGTCCTTATGGACATACACAAACATTCGGTCGATTCATTTGGCCGACAGAGACCAGAACCACAATTGTATTCATAGAAAAACATTCACTTTCCAAGACATCATTGTTCCACACGAGTTGTCTTCATCCGCCCCACCCAAACGTACTCACTTCGATGCAGCCTGCAACGAAACGACCCCGGATGCCCCGTCGGCGAGCACAAGCACCGCACCTTCGCCGACCCACCGCCACTGCTGCTACTCCCAGCCGCTGATGCTGCCTGCAAGAGGACCCAATTGCTTTGCACACCCAAAAGCTCCCTCCGGCTTACCAGCCAAGGCCGTAAATCATCATATGGAAATGGATCCACAAAATCCGGACTTCATTTTAACATATAACTCCGTTCGTATACCAAACTCAAATCATCTGGCAGCTTTGATGATGGGAAAGAAGAGCAGCAAACAAACCATCAGATTGGGGCGATGGAGAAGCGGGTACCAACCCAATCTGTGGAAGGTGTTATGGAGGAAACTGAGAAGAGAAAAGAGGAACAAAACCACGACGTATTCCTCAGGGAACTTGATTCCTTATGATCCTTTCTCTTATTCACACAATTTCGACCAAGGCAACGCTGCCGAAGAGCCCGATATTCTTTGCCGCTCCTTCTCCGCCCGCTTTGCCCTCGCCGATGCTGCTTCCGCCTTCTTTCTTGACAACCAGCTTCAATAA

Protein sequence

MESLRLQNGRISSLWTYTNIRSIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRTHFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVNHHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKVLWRKLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFALADAASAFFLDNQLQ
Homology
BLAST of Csor.00g090060 vs. NCBI nr
Match: KAG6587950.1 (hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 509 bits (1311), Expect = 3.14e-182
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0

Query: 1   MESLRLQNGRISSLWTYTNIRSIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60
           MESLRLQNGRISSLWTYTNIRSIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT
Sbjct: 1   MESLRLQNGRISSLWTYTNIRSIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60

Query: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120
           HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN
Sbjct: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120

Query: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKVLWR 180
           HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKVLWR
Sbjct: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKVLWR 180

Query: 181 KLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFALADAASAFF 240
           KLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFALADAASAFF
Sbjct: 181 KLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFALADAASAFF 240

Query: 241 LDNQLQ 246
           LDNQLQ
Sbjct: 241 LDNQLQ 246

BLAST of Csor.00g090060 vs. NCBI nr
Match: KAG7021839.1 (hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 504 bits (1299), Expect = 2.12e-180
Identity = 242/246 (98.37%), Postives = 246/246 (100.00%), Query Frame = 0

Query: 1   MESLRLQNGRISSLWTYTNIRSIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60
           MESLRLQNGRISSLWTYTNIR+IHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT
Sbjct: 1   MESLRLQNGRISSLWTYTNIRAIHLADRDQNHNCIHRKTFTFQDIIVPHELSSSAPPKRT 60

Query: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120
           HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN
Sbjct: 61  HFDAACNETTPDAPSASTSTAPSPTHRHCCYSQPLMLPARGPNCFAHPKAPSGLPAKAVN 120

Query: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKVLWR 180
           HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWK+LWR
Sbjct: 121 HHMEMDPQNPDFILTYNSVRIPNSNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKLLWR 180

Query: 181 KLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFALADAASAFF 240
           KLRR+KRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAE+PDILCRSFSARFALADAASAFF
Sbjct: 181 KLRRQKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEDPDILCRSFSARFALADAASAFF 240

Query: 241 LDNQLQ 246
           LDNQLQ
Sbjct: 241 LDNQLQ 246

BLAST of Csor.00g090060 vs. NCBI nr
Match: KAE8653121.1 (hypothetical protein Csa_019717, partial [Cucumis sativus])

HSP 1 Score: 120 bits (302), Expect = 7.26e-31
Identity = 68/100 (68.00%), Postives = 72/100 (72.00%), Query Frame = 0

Query: 154 KKSSKQTIRLGRWR--SGYQPNLWKVLWRKLRREKR------NKTTTYSSG-NLIPYDPF 213
           +K  + TIRLG WR  +  QPN+WKVLWRKLRREKR      N TT YSSG  LIPYDPF
Sbjct: 10  RKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPF 69

Query: 214 SYSHNFDQGNAAEEPDILCRSFSARFALADAASAFFLDNQ 244
           SYS NFDQG A EE D L RSFSARFALAD ASA FL  Q
Sbjct: 70  SYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 109

BLAST of Csor.00g090060 vs. NCBI nr
Match: KHN20690.1 (hypothetical protein glysoja_019007 [Glycine soja])

HSP 1 Score: 73.2 bits (178), Expect = 9.92e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 175 WKVLWRKLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFA 231
           WKVLW KL++EK+    + SS   +PYDP++YS NFDQG A +EPD   RSFS RFA
Sbjct: 23  WKVLWMKLKKEKKKLFESASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 79

BLAST of Csor.00g090060 vs. NCBI nr
Match: KAG5009349.1 (hypothetical protein JHK87_017864 [Glycine soja] >KAG5022044.1 hypothetical protein JHK85_018386 [Glycine max] >KAG5142226.1 hypothetical protein JHK82_017921 [Glycine max])

HSP 1 Score: 73.2 bits (178), Expect = 1.43e-12
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 175 WKVLWRKLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFA 231
           WKVLW KL++EK+    + SS   +PYDP++YS NFDQG A +EPD   RSFS RFA
Sbjct: 37  WKVLWMKLKKEKKKLFESASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 93

BLAST of Csor.00g090060 vs. ExPASy TrEMBL
Match: A0A0A0LWX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 3.03e-31
Identity = 68/100 (68.00%), Postives = 72/100 (72.00%), Query Frame = 0

Query: 154 KKSSKQTIRLGRWR--SGYQPNLWKVLWRKLRREKR------NKTTTYSSG-NLIPYDPF 213
           +K  + TIRLG WR  +  QPN+WKVLWRKLRREKR      N TT YSSG  LIPYDPF
Sbjct: 5   RKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPF 64

Query: 214 SYSHNFDQGNAAEEPDILCRSFSARFALADAASAFFLDNQ 244
           SYS NFDQG A EE D L RSFSARFALAD ASA FL  Q
Sbjct: 65  SYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 104

BLAST of Csor.00g090060 vs. ExPASy TrEMBL
Match: I1KIS1 (Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.91e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 175 WKVLWRKLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSFSARFA 231
           WKVLW KL++EK+    + SS   +PYDP++YS NFDQG A +EPD   RSFS RFA
Sbjct: 37  WKVLWMKLKKEKKKLFESASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 93

BLAST of Csor.00g090060 vs. ExPASy TrEMBL
Match: W9R638 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026180 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.73e-12
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 167 RSGYQPNLWKVLWRKLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEPDILCRSF 226
           ++G +  +WKVLW K+++EKR    + S    +PYDP++YS NFDQG+AA+ P+ L RSF
Sbjct: 28  KAGSKMPVWKVLWTKIKKEKRRFFDSSSDPAHVPYDPYTYSQNFDQGSAAD-PENLSRSF 87

Query: 227 SARFAL 232
           SARFA+
Sbjct: 88  SARFAV 92

BLAST of Csor.00g090060 vs. ExPASy TrEMBL
Match: A0A4D6LVT9 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g177 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.38e-12
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 175 WKVLWRKLRREKRNKTTTYSSGNL-IPYDPFSYSHNFDQGNAAEEPDILCRSFSARFA 231
           WKVLW KL++EK+    + SS  L +PYDP++YS NFD+G A +EPD L RSFSA+FA
Sbjct: 38  WKVLWMKLKKEKKKLFESASSSPLQLPYDPYTYSLNFDRGTAKDEPDNLSRSFSAKFA 95

BLAST of Csor.00g090060 vs. ExPASy TrEMBL
Match: A0A200PNY2 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g34 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.09e-12
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 0

Query: 160 TIRLGRWRSGYQPNLWKVLWRKLRREKRNKTTTYSSGNLIPYDPFSYSHNFDQGNAAEEP 219
           T+ L   RS   P  W++LWRK+++EK+    + S    +PYDP++YS NFD G+A  EP
Sbjct: 32  TLNLPVTRSSSTPK-WRLLWRKIKKEKKKIFDSSSVQAQVPYDPYTYSQNFDHGSAWAEP 91

Query: 220 DILCRSFSARFA 231
           D L RSFSARFA
Sbjct: 92  DNLSRSFSARFA 102

BLAST of Csor.00g090060 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.7e-04
Identity = 32/91 (35.16%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 144 SNHLAALMMGKKSSKQTIRLGRWRSGYQPNLWKVLWRKLRREKRNKTTTYSSGNLIPYDP 203
           S+H   +++G+ S     +    R       WKVL  KL+       +  SS  ++ Y+P
Sbjct: 20  SSHRETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKLKL----LPSRASSTKVVAYEP 79

Query: 204 FSYSHNFDQG---NAAEEPDILCRSFSARFA 232
             YS NFDQG   +  +EP+ L RSFS RFA
Sbjct: 80  CDYSLNFDQGPGWHDHDEPENLSRSFSCRFA 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6587950.13.14e-182100.00hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7021839.12.12e-18098.37hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAE8653121.17.26e-3168.00hypothetical protein Csa_019717, partial [Cucumis sativus][more]
KHN20690.19.92e-1357.89hypothetical protein glysoja_019007 [Glycine soja][more]
KAG5009349.11.43e-1257.89hypothetical protein JHK87_017864 [Glycine soja] >KAG5022044.1 hypothetical prot... [more]
Match NameE-valueIdentityDescription
A0A0A0LWX33.03e-3168.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1[more]
I1KIS16.91e-1357.89Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1[more]
W9R6384.73e-1251.52Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026180 PE=4 SV=1[more]
A0A4D6LVT95.38e-1258.62Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG5g177 PE=4 SV=1[more]
A0A200PNY28.09e-1250.00Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9069g34 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G25735.11.7e-0435.16unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..84
NoneNo IPR availablePANTHERPTHR33168STRESS INDUCED PROTEIN-RELATEDcoord: 153..242
NoneNo IPR availablePANTHERPTHR33168:SF44EXPRESSED PROTEINcoord: 153..242

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g090060.m01Csor.00g090060.m01mRNA