Csor.00g089190 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g089190
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	WD repeat containing protein
Location	Csor_Chr11: 3378458 .. 3380961 (-)
RNA-Seq Expression	Csor.00g089190
Synteny	Csor.00g089190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGACCCACGAGCATCACTGTCATCTCTATCTTCACCGCCGTCTTTGCCTCCCAATGATCAGCTACCCAGACGCTTCAAGGTCGTCTGGCGCGTTCTACTGATCTCCAATTTCGCCCTTTCAGGTTTATTCTATAATCTCCGCCTTCTGCATTTTCGTTTTACTCGCATTCGTGATGGGGCGTCTTTTTTTTAATCCCAATGTTGATTGTTAACCTCCCCAGATCTTCGAACTTGAAATGATTCTGAGAGATGAGAAATGGAGTTTGTGATGGAAAAGAACTGTATGTTCAATGTTTTAGTTCTGGCACGCAAGGTGTTTGATGTAATGACTGAGTTGAATTTCTTTGTGTGGTTATGAGATATATTGCTAATTGCTATTGCCGCGATTTCTTGGTGGAATATCCTTGCTTTTTCTGTCTAAATGCTTCTTTTTCGGCAAGATTGTTGTCTATAGTATTAATTGACACTCCATGTTCCAGCCACATTCGTAGGTAAAGTGGACGCTTTCTTTTATTTGGAAATATCTGAGCTTACCTTCGCTGAGACATGATAAAGATGGTATTTATTGAGGGAAATGTATATGTACAAGCAGTCCTATTGAAGTTGTTATTGCCTGATCTTTATGTTTTAATTCAAAAGGGAAGATTGCTGAGAAAATGTGTCGATAATCTACCATGGCGTGATACTATAGCCACCATAGTGTTGTTGCATATGCATAGAAGTTAGCTAGTAAAAAATTGGTCTAAGTTATTTCTTAGTTCTTCCAGGTTCTACACCTTCTATATGCTCCACTAAAATTATTGAACTTCACTTGTTAGAGTTTTACTCTTAGCTACACACAGGGATTTCTTCTAAGATATGGGGTGATTCTCTGTTTATGAGGGAGGGACATGCATTAGGATTTTCGAGTATGGTAAGCTTGAAAATTAAATTTGTGATATTCCACAGAAGATACCCGAATCAAAGGGCGTAGGAATGCTTGTTCAAAGTCGTGATCCTCCATTCGATTTCGAGAAATATTTTCATTTCTATTTATAGAACATCTCAAATCAGATACATAACCAATTAATGGTTCATGAAAGCCGTTTTTCTTTTAGATTGTGATATGTTCAATTCACATGTCTTACAAGTTCTTTTGAATTTTCAAATTAATGTTTGAGGGACCTTGCTTCAAGAGGAGAGAAAGAGGAAGATATAGTCTCTCCATATTCTCATTTAAGCAAGGTACAACCTTAGATGGTGCCTTTCTCATGTTGTCCATTGGCTCGAGTTAGACGAGAACTAGCTTATTGATGAGGTGATAACCAAGATCAGCTATTCAATTTTCATTTCCGGATGAACCAGGAAAGTTACAAGTCTTGAATCTGGATTCTAGCACCGTCCTTCACTGTTTCTCCTTGAAGCAGTCATAGTTCTCTTCTTTTCTTCCCAGTATTATTCTTTATCCAAGGGCATTTGCAGGGATTTTAAAACATCTCAATCTCCTTGCTCTGATTCCTTCCTTGTCATAATGATTTTTTTTTGTTGTCACTTCCTTTAGAAGTTATGCTTCCAGTTTCATTTTCAACGCGGTAACACGTTGTAAAGCTCTGGATATTGATCGGTGCATTCATTCTGTCTATGGAAAATCTTTTGAAATCTCTTCCTGAACTCTATGAAGAATATTCCATATCCGATTAGAATTTTTGAGACAGAAAGTTAATAACCTTGCGTATTTTATTCAATAGAGGCAAGGGCATATATATAGCCACTTAATGATACAACAGAATTATTACAAAGTACTAAATCTAATAAGAGTCTCCATTCCGAGAGTTTTCTGTTCAAATGCCAAGAGCAAGTTCTCCCGTTTCTTTTGTGGCCATATTTGCCCCTGCACTTTCATTTGCTTTGGGTCTATGCAGAAAAAGCTTTGATCTCAGATCTCTCATTCGAAAGAATTCAGAGGATTTTGAACGCAGACATTGTTATTGGTTTGATCGTTCGAGTCAGCTCATTCCAAAGCCTCTCTTTGGTTTTATTTACAAGATATATTCTAAATTGGAAAGCTTTTATCCTTTGTAACTTTATTTTCCAACTCCGTTTGGAGTTCGTATTCAAAGCTTTGTTTCTTGTTAAAAAAATTTCTAGAACTTCAGTAGGAGGAACAGTTACTGCTGCCACATGACAGCATTTAGTTGATTTTTAACTTCAGACATGTGTTTTCGACATTTACTGCTGCAACTGATGTGTATTCCTTACCTTGCAGCCTACATGTTTGCAAGTGCAAGGAAGAAAGACTTGGGGCAAATGGAGAATGATGAAGCAGAAAAAGATTTGGGTCAACTGGAAAATGATGGAATAGAAAAATGCAGTGATAGTGAAATAATGGAAATACCCTCAACGTTTATGGTGGATACCACTGGCATAGTTACAGAGAACATCTCGGAAGATCAGCACCAAAAACCATTCCACTGGATTGTCGATGGTTGGAGAGAAAAAACAGGTTCGAGTAAAAAATGA

mRNA sequence

ATGGCGGACCCACGAGCATCACTGTCATCTCTATCTTCACCGCCGTCTTTGCCTCCCAATGATCAGCTACCCAGACGCTTCAAGGTCGTCTGGCGCGTTCTACTGATCTCCAATTTCGCCCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAAAGACTTGGGGCAAATGGAGAATGATGAAGCAGAAAAAGATTTGGGTCAACTGGAAAATGATGGAATAGAAAAATGCAGTGATAGTGAAATAATGGAAATACCCTCAACGTTTATGGTGGATACCACTGGCATAGTTACAGAGAACATCTCGGAAGATCAGCACCAAAAACCATTCCACTGGATTGTCGATGGTTGGAGAGAAAAAACAGGTTCGAGTAAAAAATGA

Coding sequence (CDS)

ATGGCGGACCCACGAGCATCACTGTCATCTCTATCTTCACCGCCGTCTTTGCCTCCCAATGATCAGCTACCCAGACGCTTCAAGGTCGTCTGGCGCGTTCTACTGATCTCCAATTTCGCCCTTTCAGCCTACATGTTTGCAAGTGCAAGGAAGAAAGACTTGGGGCAAATGGAGAATGATGAAGCAGAAAAAGATTTGGGTCAACTGGAAAATGATGGAATAGAAAAATGCAGTGATAGTGAAATAATGGAAATACCCTCAACGTTTATGGTGGATACCACTGGCATAGTTACAGAGAACATCTCGGAAGATCAGCACCAAAAACCATTCCACTGGATTGTCGATGGTTGGAGAGAAAAAACAGGTTCGAGTAAAAAATGA

Protein sequence

MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREKTGSSKK

Homology

[Close]

BLAST of Csor.00g089190 vs. NCBI nr
Match: KAG6588036.1 (hypothetical protein SDJN03_16601, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021933.1 hypothetical protein SDJN02_15661 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 253 bits (645), Expect = 1.23e-84
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60
           MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60

Query: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120
           EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120

Query: 121 TGSSKK 126
           TGSSKK
Sbjct: 121 TGSSKK 126

[Close]

BLAST of Csor.00g089190 vs. NCBI nr
Match: XP_023530326.1 (uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250 bits (639), Expect = 1.01e-83
Identity = 125/126 (99.21%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60
           MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60

Query: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120
           EAEKDLGQLENDGIEKCSDSEIMEIPST MVDTTGIVTENISEDQHQKPFHWIVDGWREK
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTLMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120

Query: 121 TGSSKK 126
           TGSSKK
Sbjct: 121 TGSSKK 126

[Close]

BLAST of Csor.00g089190 vs. NCBI nr
Match: XP_022968528.1 (uncharacterized protein LOC111467730 isoform X1 [Cucurbita maxima])

HSP 1 Score: 249 bits (635), Expect = 4.13e-83
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60
           MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQME+D
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMESD 60

Query: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120
           EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENI EDQHQKPFHWIVDGWREK
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENIPEDQHQKPFHWIVDGWREK 120

Query: 121 TGSSKK 126
           TGSSKK
Sbjct: 121 TGSSKK 126

[Close]

BLAST of Csor.00g089190 vs. NCBI nr
Match: XP_022926648.1 (uncharacterized protein LOC111433716 [Cucurbita moschata])

HSP 1 Score: 247 bits (630), Expect = 2.39e-82
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60
           MADPRASLSSLSSPPSL PNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEN+
Sbjct: 1   MADPRASLSSLSSPPSLLPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENN 60

Query: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120
           EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120

Query: 121 TGSSKK 126
           TGSSKK
Sbjct: 121 TGSSKK 126

[Close]

BLAST of Csor.00g089190 vs. NCBI nr
Match: XP_004135711.1 (uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus])

HSP 1 Score: 150 bits (378), Expect = 4.59e-44
Identity = 83/127 (65.35%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60
           M DPRA L S SS   LPPND LP+RFKV+WRVLLISNFALSAYMFASARK+        
Sbjct: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRH------- 60

Query: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWRE 120
                  QLEND +EK SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  -----FNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWRE 115

Query: 121 KTGSSKK 126
           K G S+K
Sbjct: 121 KLGFSRK 115

[Close]

BLAST of Csor.00g089190 vs. ExPASy TrEMBL
Match: A0A6J1HYA0 (uncharacterized protein LOC111467730 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467730 PE=4 SV=1)

HSP 1 Score: 249 bits (635), Expect = 2.00e-83
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60
           MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQME+D
Sbjct: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMESD 60

Query: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120
           EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENI EDQHQKPFHWIVDGWREK
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENIPEDQHQKPFHWIVDGWREK 120

Query: 121 TGSSKK 126
           TGSSKK
Sbjct: 121 TGSSKK 126

[Close]

BLAST of Csor.00g089190 vs. ExPASy TrEMBL
Match: A0A6J1EIP0 (uncharacterized protein LOC111433716 OS=Cucurbita moschata OX=3662 GN=LOC111433716 PE=4 SV=1)

HSP 1 Score: 247 bits (630), Expect = 1.16e-82
Identity = 124/126 (98.41%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60
           MADPRASLSSLSSPPSL PNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEN+
Sbjct: 1   MADPRASLSSLSSPPSLLPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENN 60

Query: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120
           EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK
Sbjct: 61  EAEKDLGQLENDGIEKCSDSEIMEIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREK 120

Query: 121 TGSSKK 126
           TGSSKK
Sbjct: 121 TGSSKK 126

[Close]

BLAST of Csor.00g089190 vs. ExPASy TrEMBL
Match: A0A0A0M1X9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587470 PE=4 SV=1)

HSP 1 Score: 150 bits (378), Expect = 2.22e-44
Identity = 83/127 (65.35%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEND 60
           M DPRA L S SS   LPPND LP+RFKV+WRVLLISNFALSAYMFASARK+        
Sbjct: 1   MTDPRAPLPSSSSSTYLPPNDSLPKRFKVLWRVLLISNFALSAYMFASARKRH------- 60

Query: 61  EAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWRE 120
                  QLEND +EK SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWRE
Sbjct: 61  -----FNQLENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPDQGVVSGWRE 115

Query: 121 KTGSSKK 126
           K G S+K
Sbjct: 121 KLGFSRK 115

[Close]

BLAST of Csor.00g089190 vs. ExPASy TrEMBL
Match: A0A1S3BR82 (uncharacterized protein LOC103492320 OS=Cucumis melo OX=3656 GN=LOC103492320 PE=4 SV=1)

HSP 1 Score: 140 bits (353), Expect = 1.42e-40
Identity = 77/123 (62.60%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 5   RASLSSLSSPPSLPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMENDEAEK 64
           R  L S SS   LPPND LP+RFKV+WR+LLISNFALSAYMFASARK+            
Sbjct: 5   REPLPSSSSSTYLPPNDSLPKRFKVLWRILLISNFALSAYMFASARKRH----------- 64

Query: 65  DLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENISEDQHQKPFHWIVDGWREKTGS 124
              +LEND +EK SDSEI+ EIPST MVDTTGIVTEN+ EDQ Q+P   +V GWREK G 
Sbjct: 65  -FNELENDQVEKQSDSEIITEIPSTIMVDTTGIVTENVLEDQQQEPNQGVVSGWREKLGF 115

Query: 125 SKK 126
           S+K
Sbjct: 125 SRK 115

[Close]

BLAST of Csor.00g089190 vs. ExPASy TrEMBL
Match: A0A6J1D315 (uncharacterized protein LOC111016544 OS=Momordica charantia OX=3673 GN=LOC111016544 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 4.16e-38
Identity = 74/115 (64.35%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MADPRASLSSLSSPPS-LPPNDQLPRRFKVVWRVLLISNFALSAYMFASARKKDLGQMEN 60
           M DPRA L S SSPP  LPPND LPRRFKV+WRVLLISNFAL+AYMFA+ARKKDLG+ME 
Sbjct: 1   MTDPRAPLPSSSSPPPPLPPNDLLPRRFKVIWRVLLISNFALAAYMFANARKKDLGRMEK 60

Query: 61  DEAEKDLGQLENDGIEKCSDSEIM-EIPSTFMVDTTGIVTENISEDQHQKPFHWI 113
           D             +EK SD E+M  IPST MVDTT I  ENISED  ++PF W+
Sbjct: 61  DP------------VEKHSDGEVMTNIPSTLMVDTTAIAAENISEDHQREPFQWM 103

The following BLAST results are available for this feature:

BLAST of Csor.00g089190 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g089190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588036.1	1.23e-84	100.00	hypothetical protein SDJN03_16601, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023530326.1	1.01e-83	99.21	uncharacterized protein LOC111792930 [Cucurbita pepo subsp. pepo]	[more]
XP_022968528.1	4.13e-83	98.41	uncharacterized protein LOC111467730 isoform X1 [Cucurbita maxima]	[more]
XP_022926648.1	2.39e-82	98.41	uncharacterized protein LOC111433716 [Cucurbita moschata]	[more]
XP_004135711.1	4.59e-44	65.35	uncharacterized protein LOC101210247 isoform X1 [Cucumis sativus]	[more]

BLAST of Csor.00g089190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HYA0	2.00e-83	98.41	uncharacterized protein LOC111467730 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EIP0	1.16e-82	98.41	uncharacterized protein LOC111433716 OS=Cucurbita moschata OX=3662 GN=LOC1114337...	[more]
A0A0A0M1X9	2.22e-44	65.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G587470 PE=4 SV=1	[more]
A0A1S3BR82	1.42e-40	62.60	uncharacterized protein LOC103492320 OS=Cucumis melo OX=3656 GN=LOC103492320 PE=...	[more]
A0A6J1D315	4.16e-38	64.35	uncharacterized protein LOC111016544 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of Csor.00g089190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR34364	WAS/WASL-INTERACTING FAMILY PROTEIN	coord: 9..119
None	No IPR available	PANTHER	PTHR34364:SF9	SUBFAMILY NOT NAMED	coord: 9..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g089190.m01	Csor.00g089190.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane