Csor.00g088570 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g088570
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	NAC domain protein
Location	Csor_Chr01: 10002071 .. 10002364 (-)
RNA-Seq Expression	Csor.00g088570
Synteny	Csor.00g088570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACAATTTTCCAGTCCCAACAGCAGCCTGCTTCCAGGCCGTCGCACGCCGGCGCCGTAAGGGAAGGTGGCCGAAGCCGGAGCCTTAGATCGAATTGCAGGAGCTTGAGTTTTGGGGGAGTGGGTAGAGGTGGCCGTAATGTGACGGCAGCCGGAGATAAGCTCCGGCGGCTTCAGGGCAGAAGAGAGATGTTGAGAAGGGCGTTGACGCCGCCCAACCGGAGACCCACTCTCCGGTGGTTGAATTTCCGAGCAACTCCCAGTCGGCTCTCGAATATGTCTATGGCTTGA

mRNA sequence

ATGCCTACAATTTTCCAGTCCCAACAGCAGCCTGCTTCCAGGCCGTCGCACGCCGGCGCCGTAAGGGAAGGTGGCCGAAGCCGGAGCCTTAGATCGAATTGCAGGAGCTTGAGTTTTGGGGGAGTGGGTAGAGGTGGCCGTAATGTGACGGCAGCCGGAGATAAGCTCCGGCGGCTTCAGGGCAGAAGAGAGATGTTGAGAAGGGCGTTGACGCCGCCCAACCGGAGACCCACTCTCCGGTGGTTGAATTTCCGAGCAACTCCCAGTCGGCTCTCGAATATGTCTATGGCTTGA

Coding sequence (CDS)

ATGCCTACAATTTTCCAGTCCCAACAGCAGCCTGCTTCCAGGCCGTCGCACGCCGGCGCCGTAAGGGAAGGTGGCCGAAGCCGGAGCCTTAGATCGAATTGCAGGAGCTTGAGTTTTGGGGGAGTGGGTAGAGGTGGCCGTAATGTGACGGCAGCCGGAGATAAGCTCCGGCGGCTTCAGGGCAGAAGAGAGATGTTGAGAAGGGCGTTGACGCCGCCCAACCGGAGACCCACTCTCCGGTGGTTGAATTTCCGAGCAACTCCCAGTCGGCTCTCGAATATGTCTATGGCTTGA

Protein sequence

MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

Homology

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BLAST of Csor.00g088570 vs. NCBI nr
Match: KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (474), Expect = 1.78e-59
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAAGDKLRRLQ 60
          MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAAGDKLRRLQ
Sbjct: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAAGDKLRRLQ 60

Query: 61 GRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
          GRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
Sbjct: 61 GRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97

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BLAST of Csor.00g088570 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122 bits (307), Expect = 5.50e-34
Identity = 73/99 (73.74%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAV-REGGRSRSLRSNCRSLSFGGVGRGGRNV-TAAGDKLRR 60
          MPTIFQSQ QP  RPS A A  RE   SRS+RS CRS SF G+ R GRNV TA GDK RR
Sbjct: 1  MPTIFQSQPQPDRRPSLAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFRR 60

Query: 61 LQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
           QGRRE+LRRAL PP R+PTLRWLNFR TPSRLSNMSMA
Sbjct: 61 NQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMA 97

[Close]

BLAST of Csor.00g088570 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 2.17e-33
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRSLSFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQPPPRRSPSVAG--REAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRN 60

Query: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMA 96

[Close]

BLAST of Csor.00g088570 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 118 bits (296), Expect = 2.53e-32
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQPPPRRTPSVAG--REPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN 60

Query: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96

[Close]

BLAST of Csor.00g088570 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 118 bits (296), Expect = 8.94e-32
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQPPPRRTPSVAG--REPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN 60

Query: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96

[Close]

BLAST of Csor.00g088570 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.05e-33
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRSLSFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQPPPRRSPSVAG--REAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRN 60

Query: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMA 96

[Close]

BLAST of Csor.00g088570 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 1.22e-32
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60
          MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+ RGGRN+ A  GD+ RR 
Sbjct: 1  MPTIFQSQPPPRRTPSVAG--REPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRN 60

Query: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Sbjct: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMA 96

[Close]

BLAST of Csor.00g088570 vs. ExPASy TrEMBL
Match: A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.76e-12
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 54  DKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
           D+LRR Q  RE+LRRAL PPNRR TLRW NF+ TPSRLSNMSMA
Sbjct: 65  DRLRRHQANREILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]

BLAST of Csor.00g088570 vs. ExPASy TrEMBL
Match: A0A068UC67 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021180001 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.26e-12
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 54  DKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSM 96
           DK RR Q ++E+LRRALTPP RRPTLRWL+FR TPSRL NMSM
Sbjct: 61  DKFRRKQAKKEILRRALTPPVRRPTLRWLDFRPTPSRLRNMSM 103

[Close]

BLAST of Csor.00g088570 vs. ExPASy TrEMBL
Match: A0A2C9W6J8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G114400 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.37e-12
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 53  GDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97
           GDKL+R Q  +E++RRALTPPNR+ TLRW NFR TPSRLSNMS A
Sbjct: 62  GDKLKRRQANKEIIRRALTPPNRKLTLRWWNFRPTPSRLSNMSTA 106

[Close]

BLAST of Csor.00g088570 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 22  REGGRSRSLRSNCRSLSFGGVGRGGRN--VTAAGDKLRR--LQGRREMLRRALTPPNRRP 81
           R  G    +R  C      G  +  R+  V  + ++L R    G RE+LRRALTPP RR 
Sbjct: 27  RSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLMRKASDGSREVLRRALTPPIRRM 86

Query: 82  TLRWLNFRATPSRLSNMS 96
            LRWLNFR TPSRL  MS
Sbjct: 87  NLRWLNFRPTPSRLCKMS 104

The following BLAST results are available for this feature:

BLAST of Csor.00g088570 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g088570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607862.1	1.78e-59	100.00	hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024857.1	5.50e-34	73.74	hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0036871.1	2.17e-33	70.41	uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9...	[more]
XP_011652880.1	2.53e-32	69.39	uncharacterized protein LOC105435142 [Cucumis sativus]	[more]
KGN60027.2	8.94e-32	69.39	hypothetical protein Csa_001878 [Cucumis sativus]	[more]

BLAST of Csor.00g088570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5L7	1.05e-33	70.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD23	1.22e-32	69.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1	[more]
A0A6N2MHB8	1.76e-12	77.27	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=...	[more]
A0A068UC67	2.26e-12	76.74	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021180001 PE=4 ...	[more]
A0A2C9W6J8	2.37e-12	73.33	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G114400 PE=4 SV=...	[more]

BLAST of Csor.00g088570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15518.1	2.0e-06	46.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g088570.m01	Csor.00g088570.m01	mRNA