Csor.00g085480 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g085480
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Plant/protein
Location	Csor_Chr05: 10515427 .. 10515777 (-)
RNA-Seq Expression	Csor.00g085480
Synteny	Csor.00g085480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACCAATCTACTCGTCTTCCGCCCCATCGGAATCCGACCCTCTGCCAGCGCCGGCACCGGTCACCGGAAATCAGATCCCCAGCGCCATTACAGGCCCTGGTGGAAACCTTGCCCGCCGAACAAAATCACCGAGGGTGCGCAGCCAAATCCTAATTCGGATTGGAATTCGGCAGAGAAGGCAGCGGGGAGCCGATTCTCTCCCGGTGGCTTAACAGCAGAGAAAGCGAGGCAACTCCGAATTATGACGTCGAAAACCGATTGTTTTCAGGACGGAATGTACCATTCGGGCGTCGCATCTCGGCTGGCTTCCGATTTCTCGAACACTAAGAATGACACCGGAAAATAG

mRNA sequence

ATGACCACCAATCTACTCGTCTTCCGCCCCATCGGAATCCGACCCTCTGCCAGCGCCGGCACCGGTCACCGGAAATCAGATCCCCAGCGCCATTACAGGCCCTGGTGGAAACCTTGCCCGCCGAACAAAATCACCGAGGGTGCGCAGCCAAATCCTAATTCGGATTGGAATTCGGCAGAGAAGGCAGCGGGGAGCCGATTCTCTCCCGGTGGCTTAACAGCAGAGAAAGCGAGGCAACTCCGAATTATGACGTCGAAAACCGATTGTTTTCAGGACGGAATGTACCATTCGGGCGTCGCATCTCGGCTGGCTTCCGATTTCTCGAACACTAAGAATGACACCGGAAAATAG

Coding sequence (CDS)

ATGACCACCAATCTACTCGTCTTCCGCCCCATCGGAATCCGACCCTCTGCCAGCGCCGGCACCGGTCACCGGAAATCAGATCCCCAGCGCCATTACAGGCCCTGGTGGAAACCTTGCCCGCCGAACAAAATCACCGAGGGTGCGCAGCCAAATCCTAATTCGGATTGGAATTCGGCAGAGAAGGCAGCGGGGAGCCGATTCTCTCCCGGTGGCTTAACAGCAGAGAAAGCGAGGCAACTCCGAATTATGACGTCGAAAACCGATTGTTTTCAGGACGGAATGTACCATTCGGGCGTCGCATCTCGGCTGGCTTCCGATTTCTCGAACACTAAGAATGACACCGGAAAATAG

Protein sequence

MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNSAEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK

Homology

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BLAST of Csor.00g085480 vs. NCBI nr
Match: KAG6599416.1 (hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 5.62e-83
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNSAE 60
           MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNSAE
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNSAE 60

Query: 61  KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 116
           KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK
Sbjct: 61  KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 116

[Close]

BLAST of Csor.00g085480 vs. NCBI nr
Match: KAG7030406.1 (hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 242 bits (618), Expect = 7.70e-81
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNSAE 60
           MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSD NSAE
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDSNSAE 60

Query: 61  KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 116
           KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK
Sbjct: 61  KAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 116

[Close]

BLAST of Csor.00g085480 vs. NCBI nr
Match: XP_022998955.1 (uncharacterized protein LOC111493481 [Cucurbita maxima])

HSP 1 Score: 230 bits (586), Expect = 6.27e-76
Identity = 112/118 (94.92%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNS-- 60
           MTTNLLVFRPIGIRPSASAGTGHRK DPQRHYRPWWKPCPPNKITEGAQP+PNSD NS  
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKPDPQRHYRPWWKPCPPNKITEGAQPDPNSDSNSNL 60

Query: 61  AEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 116
           AEKAAGSRFSPG LTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK
Sbjct: 61  AEKAAGSRFSPGCLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 118

[Close]

BLAST of Csor.00g085480 vs. NCBI nr
Match: KAA0061584.1 (hypothetical protein E6C27_scaffold41G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 3.44e-30
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGT--GHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNS 60
           MTTNLL+FRPI I+ SA++G+  GHRK  P R  RP W+P  P+ I++  +P    D +S
Sbjct: 1   MTTNLLIFRPIRIQQSATSGSSSGHRKPIPHRKGRPQWRPDLPDYISDNMEP----DLDS 60

Query: 61  AEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKN 112
            E+   S+ S G  T EKA+QLRIMT+K + F DGMYHS +ASRLASDFSNT N
Sbjct: 61  TEEVTESQLSVGCFT-EKAKQLRIMTTKANSFWDGMYHSAIASRLASDFSNTNN 109

[Close]

BLAST of Csor.00g085480 vs. NCBI nr
Match: XP_034699288.1 (uncharacterized protein LOC117924694 [Vitis riparia])

HSP 1 Score: 94.4 bits (233), Expect = 3.75e-22
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPW--WKPCPPNKITEGAQPNP----NS 60
           M TNL+ FRPIGIR  A++G  HR+S     + P   W P P     E   PNP      
Sbjct: 3   MATNLISFRPIGIRACAASGDSHRRSTSSNWWTPLFGWSPDPDYIDPETKTPNPVAQSRP 62

Query: 61  DWNSAEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDF 107
           + +   K + SR +PG  T EKA+QLR++T+ T  F D MYHS +ASRLASDF
Sbjct: 63  EQDLETKTSRSRCAPGCFTEEKAKQLRLVTTSTSSFHDAMYHSAIASRLASDF 115

[Close]

BLAST of Csor.00g085480 vs. ExPASy TrEMBL
Match: A0A6J1KDY2 (uncharacterized protein LOC111493481 OS=Cucurbita maxima OX=3661 GN=LOC111493481 PE=4 SV=1)

HSP 1 Score: 230 bits (586), Expect = 3.03e-76
Identity = 112/118 (94.92%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNS-- 60
           MTTNLLVFRPIGIRPSASAGTGHRK DPQRHYRPWWKPCPPNKITEGAQP+PNSD NS  
Sbjct: 1   MTTNLLVFRPIGIRPSASAGTGHRKPDPQRHYRPWWKPCPPNKITEGAQPDPNSDSNSNL 60

Query: 61  AEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 116
           AEKAAGSRFSPG LTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK
Sbjct: 61  AEKAAGSRFSPGCLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKNDTGK 118

[Close]

BLAST of Csor.00g085480 vs. ExPASy TrEMBL
Match: A0A5A7V2V1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001490 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 1.66e-30
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGT--GHRKSDPQRHYRPWWKPCPPNKITEGAQPNPNSDWNS 60
           MTTNLL+FRPI I+ SA++G+  GHRK  P R  RP W+P  P+ I++  +P    D +S
Sbjct: 1   MTTNLLIFRPIRIQQSATSGSSSGHRKPIPHRKGRPQWRPDLPDYISDNMEP----DLDS 60

Query: 61  AEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKN 112
            E+   S+ S G  T EKA+QLRIMT+K + F DGMYHS +ASRLASDFSNT N
Sbjct: 61  TEEVTESQLSVGCFT-EKAKQLRIMTTKANSFWDGMYHSAIASRLASDFSNTNN 109

[Close]

BLAST of Csor.00g085480 vs. ExPASy TrEMBL
Match: A0A4V3WM73 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_023489 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.03e-22
Identity = 59/126 (46.83%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRP---WWKPC-----PPNKI----TEGA 60
           M T+L  FRPIG+R   + G  HRK D  R       WW P       P+ I    +  A
Sbjct: 1   MATSLGAFRPIGVRACTTGG--HRKPDTHRRKSTSSNWWTPLFGWSSEPDYIDSADSTNA 60

Query: 61  QPNPNSDWNSA----EKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLA 110
            P+  S+  SA    +K+A SRFSPG  T EKARQLR+MT +T  F D MYHS +ASRLA
Sbjct: 61  DPSAKSESKSASDLDQKSARSRFSPGCFTEEKARQLRLMTKETSSFHDVMYHSAIASRLA 120

[Close]

BLAST of Csor.00g085480 vs. ExPASy TrEMBL
Match: F6HH66 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g04760 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.32e-22
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRPW--WKPCPPNKITEGAQPNP----NS 60
           M T+L+ FRPIGIR  A++   HR+S     + P   W P P     E   PNP     S
Sbjct: 3   MATDLISFRPIGIRACAASCDSHRRSTSSNWWTPLFGWSPDPDYIDPETKTPNPVAQSRS 62

Query: 61  DWNSAEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDF 107
           + +   K + SR++PG  T EKA+QLR++T+ T  F D MYHS +ASRLASDF
Sbjct: 63  EQDLETKTSRSRYAPGCFTEEKAKQLRLVTTSTSSFHDAMYHSAIASRLASDF 115

[Close]

BLAST of Csor.00g085480 vs. ExPASy TrEMBL
Match: A0A5D2I1G0 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D13G249300v1 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.83e-21
Identity = 59/129 (45.74%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 1   MTTNLLVFRPIGIRPSASAGTGHRKSDPQRHYRP-------WWKPC-----------PPN 60
           M TNLL FRP GI   ASA  GH K DP R           WW P              N
Sbjct: 1   MATNLLTFRPAGIY--ASAIPGHTKQDPNRRKSNPSPSSTNWWGPLFGMSPEPDYFDSDN 60

Query: 61  K--ITEGAQPNPNSDWNSAEKAAGSRFSPGGLTAEKARQLRIMTSKTDCFQDGMYHSGVA 109
           K    E  +  P +D  +A+K+  S+FSPG  T EKARQLR+MT+ T  F D MYHS +A
Sbjct: 61  KTDFKEKREVEPGTD--TAQKSIRSKFSPGSFTEEKARQLRMMTTNTSSFHDAMYHSAIA 120

[Close]

BLAST of Csor.00g085480 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-07
Identity = 38/104 (36.54%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 17  ASAGTGHRKSDPQR-HYRPWWKPC------PPNKITEGAQPNPNSDWNSAEKAAGSRFSP 76
           AS+G+G    D  R     WW P       P     E +    N D  +    +G +F  
Sbjct: 15  ASSGSGSLNPDQNRKKSAAWWAPLFGLPSDPDYLNIESSCSTVNPD-KTDISGSGQKFRR 74

Query: 77  GGLTAEKARQLRIMTSKTDCFQDGMYHSGVASRLASDFSNTKND 114
           G  T EKA+QLR  T++   F D MYHS +ASRLASD +    D
Sbjct: 75  GCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGRVED 117

[Close]

BLAST of Csor.00g085480 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.1e-06
Identity = 38/92 (41.30%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 25  KSDPQRHYRP-----WWKP-----CPPNKITEGAQPNPNSDWNSAEKAAGSRFSPGGLTA 84
           +SDP R  +P     WW P       P+ + +    N  SD + AEK    R     LT 
Sbjct: 18  ESDPARK-KPVSSVSWWAPLFGMSSEPDYVNKTV--NLESDLDKAEK----RSLRCCLTE 77

Query: 85  EKARQLRIMTSKTDCFQDGMYHSGVASRLASD 107
           EKA+QLR  T++   F D MYHS +ASRLASD
Sbjct: 78  EKAKQLRRKTAEASTFHDVMYHSAIASRLASD 102

The following BLAST results are available for this feature:

BLAST of Csor.00g085480 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g085480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599416.1	5.62e-83	100.00	hypothetical protein SDJN03_09194, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030406.1	7.70e-81	99.14	hypothetical protein SDJN02_08753, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022998955.1	6.27e-76	94.92	uncharacterized protein LOC111493481 [Cucurbita maxima]	[more]
KAA0061584.1	3.44e-30	55.26	hypothetical protein E6C27_scaffold41G001490 [Cucumis melo var. makuwa]	[more]
XP_034699288.1	3.75e-22	46.02	uncharacterized protein LOC117924694 [Vitis riparia]	[more]

BLAST of Csor.00g085480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KDY2	3.03e-76	94.92	uncharacterized protein LOC111493481 OS=Cucurbita maxima OX=3661 GN=LOC111493481...	[more]
A0A5A7V2V1	1.66e-30	55.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A4V3WM73	3.03e-22	46.83	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0234...	[more]
F6HH66	7.32e-22	45.13	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g04760 PE=4 SV=...	[more]
A0A5D2I1G0	1.83e-21	45.74	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D13G249300v1 P...	[more]

BLAST of Csor.00g085480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52720.1	1.3e-07	36.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15630.1	7.1e-06	41.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..61
None	No IPR available	PANTHER	PTHR34198	OS01G0175100 PROTEIN	coord: 1..111
None	No IPR available	PANTHER	PTHR34198:SF18	PROTEIN, PUTATIVE-RELATED	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g085480.m01	Csor.00g085480.m01	mRNA