
Csor.00g084710 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGTGGCGATCGGCCTCTTTTATCCTCGATAAGCAGCGGAAGCCCTTTCTATCTCCCCACCCGCGCAATCAACTATGGTGGACGCATTCCAAAATCCCAACACCAAAATCTCTGCTTATTACCGAAGTAGGGCTGCCCACACGGCCGTCGTCGCCGGTGATTGACTGGTCCAGGCTCAGGCCGCTGTCGGATTCCTAACCGATGACCAATCCTTGCCGGAAAATGATGTCAGGGATTCTGAATCGGGCAAGCCGTTTAGTGTTACCGACGAGTTTAATAACCGGAGGAAACAGCCGGATTTGGCGGCTGTAATAAGGTCTAGTCAGGCCACGACTATGATGGAGCTCGAAATTGAACTGAAGAAGGCTTTGGACTCGTCTGAAAGTGAGTCATTCTTAACTTCCATGCTTATGGTACTGCATTTTGAGCGGCTAGACGTTGAGGATGGTTGGGAGGGAGTCGTTGGCTAATTAAGGATGATTATGAGTTTATAAGTAAGAAATACATTTCTATTAAGACGAGCGGAAACCCAAAGCAAAACCATGAAAGCTTATTCTCAAAGTGGACAATATCATACGATATTGTATAAAGTCATGCTTTTAACTTAGCCATGTCAATAAAATCATGAAGTGTCGAACAAAGAAGTTGTGAGCCTTGAAGGTGTAGTAAAAAATGACTTTAAGTGTCGAAACTTTGTTCGAGGACTTTGGAGAAAGAGTCGAGCCTCAATTAAGGGGAGACTGTTCGAGGGCTCCATAGGACTCTATAGTATTAGGAGAGGATTGTTGAGGATTGTTGGGAGGGAGTTCTACATTGGCTAATTGAGAGAATGATCACGAGCTTGTAAGTAAGGAATACATCTCCATTGACATGAGGCCTCTTTGGGTAGCTCAAAGCAAAGCCACGAGAGCTAATGCTCAAAGTGGACAATATCATACTATTGTGAAGAGTCGTGATTCCTAACAAGTTTGTGTCAGTCTTCCGTTTGTATCATCTTCTATGCCTTACTTGGTTTAGAAGTTGTGTCCGAGTGGATGCACGACCACGAGGCTTTCTTTTAA ATGTGGTGGCGATCGGCCTCTTTTATCCTCGATAAGCAGCGGAAGCCCTTTCTATCTCCCCACCCGCGCAATCAACTATGGTGGACGCATTCCAAAATCCCAACACCAAAATCTCTGCTTATTACCGAAGTAGGGCTGCCCACACGGCCGTCGTCGCCGGTGATTGACTGGGATTCTGAATCGGGCAAGCCGTTTAGTGTTACCGACGAGTTTAATAACCGGAGGAAACAGCCGGATTTGGCGGCTGTAATAAGGTCTAGTCAGGCCACGACTATGATGGAGCTCGAAATTGAACTGAAGAAGGCTTTGGACTCGTCTGAAAGTGAGTCATTCTTAACTTCCATGCTTATGTCTTCCGTTTGTATCATCTTCTATGCCTTACTTGGTTTAGAAGTTGTGTCCGAGTGGATGCACGACCACGAGGCTTTCTTTTAA ATGTGGTGGCGATCGGCCTCTTTTATCCTCGATAAGCAGCGGAAGCCCTTTCTATCTCCCCACCCGCGCAATCAACTATGGTGGACGCATTCCAAAATCCCAACACCAAAATCTCTGCTTATTACCGAAGTAGGGCTGCCCACACGGCCGTCGTCGCCGGTGATTGACTGGGATTCTGAATCGGGCAAGCCGTTTAGTGTTACCGACGAGTTTAATAACCGGAGGAAACAGCCGGATTTGGCGGCTGTAATAAGGTCTAGTCAGGCCACGACTATGATGGAGCTCGAAATTGAACTGAAGAAGGCTTTGGACTCGTCTGAAAGTGAGTCATTCTTAACTTCCATGCTTATGTCTTCCGTTTGTATCATCTTCTATGCCTTACTTGGTTTAGAAGTTGTGTCCGAGTGGATGCACGACCACGAGGCTTTCTTTTAA MWWRSASFILDKQRKPFLSPHPRNQLWWTHSKIPTPKSLLITEVGLPTRPSSPVIDWDSESGKPFSVTDEFNNRRKQPDLAAVIRSSQATTMMELEIELKKALDSSESESFLTSMLMSSVCIIFYALLGLEVVSEWMHDHEAFF Homology
BLAST of Csor.00g084710 vs. NCBI nr
Match: KAG6575414.1 (hypothetical protein SDJN03_26053, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 293 bits (751), Expect = 3.22e-100 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
BLAST of Csor.00g084710 vs. NCBI nr
Match: XP_023000216.1 (translation initiation factor eIF-2B subunit alpha-like [Cucurbita maxima]) HSP 1 Score: 99.0 bits (245), Expect = 2.99e-21 Identity = 76/165 (46.06%), Postives = 92/165 (55.76%), Query Frame = 0
BLAST of Csor.00g084710 vs. NCBI nr
Match: XP_023514915.1 (translation initiation factor eIF-2B subunit alpha-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 97.8 bits (242), Expect = 7.95e-21 Identity = 74/165 (44.85%), Postives = 90/165 (54.55%), Query Frame = 0
BLAST of Csor.00g084710 vs. NCBI nr
Match: XP_004141730.1 (translation initiation factor eIF-2B subunit alpha [Cucumis sativus] >KGN45441.1 hypothetical protein Csa_015900 [Cucumis sativus]) HSP 1 Score: 96.3 bits (238), Expect = 2.90e-20 Identity = 73/164 (44.51%), Postives = 88/164 (53.66%), Query Frame = 0
BLAST of Csor.00g084710 vs. NCBI nr
Match: XP_022964522.1 (translation initiation factor eIF-2B subunit alpha-like [Cucurbita moschata]) HSP 1 Score: 95.9 bits (237), Expect = 4.05e-20 Identity = 74/165 (44.85%), Postives = 91/165 (55.15%), Query Frame = 0
BLAST of Csor.00g084710 vs. ExPASy TrEMBL
Match: A0A6J1KF96 (eIF-2B GDP-GTP exchange factor subunit alpha OS=Cucurbita maxima OX=3661 GN=LOC111494505 PE=3 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 1.45e-21 Identity = 76/165 (46.06%), Postives = 92/165 (55.76%), Query Frame = 0
BLAST of Csor.00g084710 vs. ExPASy TrEMBL
Match: A0A0A0KCC1 (eIF-2B GDP-GTP exchange factor subunit alpha OS=Cucumis sativus OX=3659 GN=Csa_7G448030 PE=3 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.40e-20 Identity = 73/164 (44.51%), Postives = 88/164 (53.66%), Query Frame = 0
BLAST of Csor.00g084710 vs. ExPASy TrEMBL
Match: A0A6J1HI10 (eIF-2B GDP-GTP exchange factor subunit alpha OS=Cucurbita moschata OX=3662 GN=LOC111464524 PE=3 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.96e-20 Identity = 74/165 (44.85%), Postives = 91/165 (55.15%), Query Frame = 0
BLAST of Csor.00g084710 vs. ExPASy TrEMBL
Match: A0A5A7UW24 (eIF-2B GDP-GTP exchange factor subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001650 PE=3 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 7.14e-20 Identity = 70/164 (42.68%), Postives = 89/164 (54.27%), Query Frame = 0
BLAST of Csor.00g084710 vs. ExPASy TrEMBL
Match: A0A1S3CGI1 (eIF-2B GDP-GTP exchange factor subunit alpha OS=Cucumis melo OX=3656 GN=LOC103500646 PE=3 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 7.14e-20 Identity = 70/164 (42.68%), Postives = 89/164 (54.27%), Query Frame = 0
BLAST of Csor.00g084710 vs. TAIR 10
Match: AT1G53880.1 (Eukaryotic translation initiation factor 2B (eIF-2B) family protein ) HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12 Identity = 62/155 (40.00%), Postives = 83/155 (53.55%), Query Frame = 0
BLAST of Csor.00g084710 vs. TAIR 10
Match: AT1G53900.1 (Eukaryotic translation initiation factor 2B (eIF-2B) family protein ) HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12 Identity = 62/155 (40.00%), Postives = 83/155 (53.55%), Query Frame = 0
BLAST of Csor.00g084710 vs. TAIR 10
Match: AT1G72340.1 (NagB/RpiA/CoA transferase-like superfamily protein ) HSP 1 Score: 66.6 bits (161), Expect = 1.8e-11 Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|