Csor.00g084700 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g084700
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionLate embryogenesis abundant protein
LocationCsor_Chr17: 6690694 .. 6692002 (-)
RNA-Seq ExpressionCsor.00g084700
SyntenyCsor.00g084700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGCTAACTGGAAATGGTGTTTACTTTATAAGGTACGTTCTTCTCGGCTTGGTTTTATATGTTTTTTTTGTAATTTCCTACATTGGTTGGGGAGGAGAACAAACACCCTTTATAAGGGTGTGGAAACCTTTCTATAGTAGATGCGTTTTAAAGTCTTGAGAGGAAGGCTAAAAGGAAAAGTTCAAGAAGGACAATATTTGCTAGAAGTGGGTCTAGATGGTTACAAATGGTGTCAGAGCCAGACATTGGGTGGTGTGCTAGTAAGGATGCTGGGCCTCGAAAGGGATGGATTTGGTGGGAGTCTTATGTCGATTGGAGAATGGAACGAGTGCTAGTGAGGACGCTGGGACCTAAAGGGATGGATTGCGATATCCCACTAGGGAGGAGAACGAAACACCCTTAGAAAGGGGGGTGGATTTTGATATCCTACTGGGGAGGAGAACGAAACACCCTTAGAAGGGGGTCGATTGTGATATCCTACTGGGGAGGAGAACGAAACACCCTTAGAAGGGGGTCGATTGTGATATCCTATGGGGGAGGAGAACGAAATACCCTTTATAAGGGTGTGAAAACTTTTCCCTACCATTTTAAGGTCTTGAGGGGAAGCCTAAAAGGGAAAGCCCAAAGAGAACAATGTTTGCTAGTGATGGACCCAAATGGTATTAGAGCCGGACACCGGCAATGTGCTAGCGAGGAGGCTGTTCCTCGAACGGGGTAGACACGAGGCGGTGTGCTAGTAAGGAGGGGCCCCGAAGGGGGTTGGATTTGGTGGAAGTCCCACGTCGATTGGAGAATGGAACGAGTGCCAGCAAGGACACTGGGCCCTGAAGGGGGGTGGATTGTGATATCCCACTGGGAAGGAGAACGAAACACCCTTAAAAGGGGGTGGATTGTGATATCCCATTGGGAAGGAGAACGAAACACCCTTAGAAGGGGGTAGATTGTGATATCCTACGGGAGAGGAGAACGAAACACCCTTTATAAGGGTGTGAAAACTTTTCCCTAACAGACACGTTTTAAAGCCTTGACTTGTCTAATTTAGCAATGCAATAGCAGGCGACTGAGCTCTTTGGTTGCATCCGAGCAACTTAAAGCACGAGCAACTGCACCGATGACGGTGAAGAACGTGATAGCAACTGTGGAAACGAGCGGTTCGGATGATATCAAGGCAGTTGAACAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTCGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAA

mRNA sequence

ATGGCTAAGCTAACTGGAAATGGTGTTTACTTTATAAGGCGACTGAGCTCTTTGGTTGCATCCGAGCAACTTAAAGCACGAGCAACTGCACCGATGACGGTGAAGAACGTGATAGCAACTGTGGAAACGAGCGGTTCGGATGATATCAAGGCAGTTGAACAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTCGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAA

Coding sequence (CDS)

ATGGCTAAGCTAACTGGAAATGGTGTTTACTTTATAAGGCGACTGAGCTCTTTGGTTGCATCCGAGCAACTTAAAGCACGAGCAACTGCACCGATGACGGTGAAGAACGTGATAGCAACTGTGGAAACGAGCGGTTCGGATGATATCAAGGCAGTTGAACAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACTTCGGAGAGATTGATGTGGTCGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAA

Protein sequence

MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF
Homology
BLAST of Csor.00g084700 vs. NCBI nr
Match: KAG6575415.1 (hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (476), Expect = 7.09e-60
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60
          MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM
Sbjct: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF 94
          KDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF
Sbjct: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF 94

BLAST of Csor.00g084700 vs. NCBI nr
Match: KAE8646489.1 (hypothetical protein Csa_015817 [Cucumis sativus])

HSP 1 Score: 111 bits (278), Expect = 7.17e-30
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 15 LSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHF 74
          +SS VASEQLKA+ TA M V+ V A VET G D+ + VEQK  FWMKDPKSGNWIPENHF
Sbjct: 1  MSSSVASEQLKAQTTASMVVRKVKAAVETGGYDN-EVVEQKKTFWMKDPKSGNWIPENHF 60

Query: 75 GEIDVVELREKLLSKTKKL 93
           E+DVVELREKLL+K KKL
Sbjct: 61 EEMDVVELREKLLAKPKKL 78

BLAST of Csor.00g084700 vs. NCBI nr
Match: KAA0059359.1 (putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1 putative Senescence-associated protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (266), Expect = 4.57e-28
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 0

Query: 15 LSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHF 74
          +SS +ASEQLKA+ TA M V+ V A VETS  D+ + VEQK  FWMKDPKSGNWIPENHF
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDN-EVVEQKKTFWMKDPKSGNWIPENHF 60

Query: 75 GEIDVVELREKLLSKTK 91
           EIDVVELREKLL+K K
Sbjct: 61 EEIDVVELREKLLAKPK 76

BLAST of Csor.00g084700 vs. NCBI nr
Match: EOY27380.1 (Senescence-associated gene 21, putative [Theobroma cacao])

HSP 1 Score: 85.1 bits (209), Expect = 2.70e-19
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 0

Query: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKA---VEQKNI 60
          MA+L+      + R S  VA+E +K +A A +T            + D++A    EQK  
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVT----------RNATDLRAEVLAEQKET 60

Query: 61 FWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK 92
          FWM+DPK+GNWIPENHFG+IDV ELREK LSK +K
Sbjct: 61 FWMRDPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

BLAST of Csor.00g084700 vs. NCBI nr
Match: XP_039070777.1 (uncharacterized protein LOC120217767 isoform X1 [Hibiscus syriacus] >KAE8715086.1 Eukaryotic translation initiation factor 2B family protein [Hibiscus syriacus])

HSP 1 Score: 85.1 bits (209), Expect = 2.93e-19
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60
          MA+L+      + R S  V +E +K +A A +  K V    E   +DD     +K +FWM
Sbjct: 1  MAQLSIKNFQLLSRRSYAVVAENMKKQAAASVMRKVVDLRAEAVSADDA----EKEMFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKK 92
          +DPK+GNWIPENHFG+IDV ELREKLL K  K
Sbjct: 61 RDPKTGNWIPENHFGDIDVAELREKLLPKNHK 88

BLAST of Csor.00g084700 vs. ExPASy TrEMBL
Match: A0A0A0K7L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 3.73e-39
Identity = 68/93 (73.12%), Postives = 77/93 (82.80%), Query Frame = 0

Query: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60
          MAK+TGN +YFIRR+SS VASEQLKA+ TA M V+ V A VET G D+ + VEQK  FWM
Sbjct: 1  MAKVTGNSLYFIRRMSSSVASEQLKAQTTASMVVRKVKAAVETGGYDN-EVVEQKKTFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKKL 93
          KDPKSGNWIPENHF E+DVVELREKLL+K KKL
Sbjct: 61 KDPKSGNWIPENHFEEMDVVELREKLLAKPKKL 92

BLAST of Csor.00g084700 vs. ExPASy TrEMBL
Match: A0A5D3BWU2 (Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001640 PE=4 SV=1)

HSP 1 Score: 107 bits (266), Expect = 2.21e-28
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 0

Query: 15 LSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHF 74
          +SS +ASEQLKA+ TA M V+ V A VETS  D+ + VEQK  FWMKDPKSGNWIPENHF
Sbjct: 1  MSSSIASEQLKAQTTASMVVRKVKAAVETSCYDN-EVVEQKKTFWMKDPKSGNWIPENHF 60

Query: 75 GEIDVVELREKLLSKTK 91
           EIDVVELREKLL+K K
Sbjct: 61 EEIDVVELREKLLAKPK 76

BLAST of Csor.00g084700 vs. ExPASy TrEMBL
Match: A0A061GBY1 (Senescence-associated gene 21, putative OS=Theobroma cacao OX=3641 GN=TCM_029240 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.31e-19
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 0

Query: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKA---VEQKNI 60
          MA+L+      + R S  VA+E +K +A A +T            + D++A    EQK  
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASVT----------RNATDLRAEVLAEQKET 60

Query: 61 FWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK 92
          FWM+DPK+GNWIPENHFG+IDV ELREK LSK +K
Sbjct: 61 FWMRDPKTGNWIPENHFGDIDVAELREKFLSKKQK 85

BLAST of Csor.00g084700 vs. ExPASy TrEMBL
Match: A0A6A3BDL0 (Eukaryotic translation initiation factor 2B family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110187pilonHSYRG00534 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.42e-19
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60
          MA+L+      + R S  V +E +K +A A +  K V    E   +DD     +K +FWM
Sbjct: 1  MAQLSIKNFQLLSRRSYAVVAENMKKQAAASVMRKVVDLRAEAVSADDA----EKEMFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKK 92
          +DPK+GNWIPENHFG+IDV ELREKLL K  K
Sbjct: 61 RDPKTGNWIPENHFGDIDVAELREKLLPKNHK 88

BLAST of Csor.00g084700 vs. ExPASy TrEMBL
Match: A0A6J1B6Z6 (uncharacterized protein LOC110424687 OS=Herrania umbratica OX=108875 GN=LOC110424687 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.31e-19
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 1  MAKLTGNGVYFIRRLSSLVASEQLKARATAPMTVKNVIATVETSGSDDIKAVEQKNIFWM 60
          MA+L+      + R S  VA+E +K +A A + ++N      T    ++ A EQK  FWM
Sbjct: 1  MAQLSVKSFQLLSRRSYAVAAENMKVQAVASV-MRNA-----TDLRTEVLA-EQKETFWM 60

Query: 61 KDPKSGNWIPENHFGEIDVVELREKLLSKTKK 92
          +DPK+GNWIPENHFG+IDVVELREK LSK +K
Sbjct: 61 RDPKTGNWIPENHFGDIDVVELREKFLSKKQK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6575415.17.09e-60100.00hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646489.17.17e-3072.15hypothetical protein Csa_015817 [Cucumis sativus][more]
KAA0059359.14.57e-2871.43putative Senescence-associated protein 21 [Cucumis melo var. makuwa] >TYK03967.1... [more]
EOY27380.12.70e-1947.37Senescence-associated gene 21, putative [Theobroma cacao][more]
XP_039070777.12.93e-1947.83uncharacterized protein LOC120217767 isoform X1 [Hibiscus syriacus] >KAE8715086.... [more]
Match NameE-valueIdentityDescription
A0A0A0K7L43.73e-3973.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448050 PE=4 SV=1[more]
A0A5D3BWU22.21e-2871.43Putative Senescence-associated protein 21 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A061GBY11.31e-1947.37Senescence-associated gene 21, putative OS=Theobroma cacao OX=3641 GN=TCM_029240... [more]
A0A6A3BDL01.42e-1947.83Eukaryotic translation initiation factor 2B family protein OS=Hibiscus syriacus ... [more]
A0A6J1B6Z65.31e-1950.00uncharacterized protein LOC110424687 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPFAMPF03242LEA_3coord: 26..87
e-value: 7.1E-13
score: 49.1
IPR004926Late embryogenesis abundant protein, LEA_3 subgroupPANTHERPTHR33509LATE EMBRYOGENIS ABUNDANT PROTEIN 2-RELATEDcoord: 11..91
NoneNo IPR availablePANTHERPTHR33509:SF21OS02G0564600 PROTEINcoord: 11..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g084700.m01Csor.00g084700.m01mRNA