Csor.00g084570 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g084570
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	homeobox protein prospero-like isoform X1
Location	Csor_Chr17: 6805776 .. 6807685 (-)
RNA-Seq Expression	Csor.00g084570
Synteny	Csor.00g084570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGTCTCCTTCAAAATCTCGGTAAAGGGTAAAAGGTTTCGTTCAACGCCGTGTATTACTCGATCCAGGAGCACTGCCGTTGATGATGACGAATTTAAGGATGAGTCGAGGGTTTTATCAAAGAACAAATCTTCTCTTGCTCGTAAGCTTGACGTAAGTGCTTCCGATTTTGCTTTTCCTTGTTCTTGATGTGGAAATCTGATTTCAGTGCATTTGCTTGTTGTTTTAGGGATTTTGATTTTGTTCCTTTGTAGATGAACTCAATGATCCTCCTTATTTTAATCCCTAAACTTTCGTACTTACCTCGTTTCAGTGTTTGTGTTTTCAAATGATGTTTTGTGTTGGCGTCCAACAATTTGTAGTGTTAAACACGAGTTCATGTGATGGAACTAAAGTAGATTTAGTAGACATTTATTGTGAGATCCTACCTTGGTTGGAAAGGGGAATGAAACATTTCTTATAAGGGTGTGGAAACGTTTCCGTTTTAGAAACCTTGAGGTGAAGCTTGAAAGGGAAAGCCCAAAGAGGATAATATCCGCTAGCTGTGGGGTTTGATTGTTACAAATGATATTAAAGCCAGGCACAAGGTGGTGTGCTAGCGAGAACGTTGGCCCCCCAAGGGGGTAGATTGTGAGATCCTACATCAGTTGGAGAGGAGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCTCCCTAGTAAGACACGTTTTTAAAAACTTTGAGGGGAAGCCCAAAAAGTACAATATCTTCTAGCGGTGGACTTGAGTTGTTACAAATGGTATTAGAGCCAGACACCGGGCGGTGTGCCAACGAAGACACTGGCCCTCAAGGGGGTGGATTTTGAGATTCCACATCGGTTGGAGAGTGGAACGAAACATTTCTTATAAGGGTGTGGAAACCTCAATCTAGTAGACATGATTCAAAAACTTTAAGGGGAAACCCAGAAAGGAACGCCCAAAGAGGACAACATCCGCTAGCGGTGGGCTTTGGCCATTACAAATGGTATCAGAGCTAGTCAACAGACGGTACGTGACACTTGTTGGAGTAGGGCTAGACTTCTCCCTAGTAGACACGTTATAAAAACCTTGAGGGAAAACCCAAAGAGGACAATATCTGCTAGCGTGGTTTTGGGCTGTTACAAATGGTATTAGTACCAGACAACGGGCGGTGTGCCAACAAGGACGCTGAGTGTCACAATCGCCCAGTGACATTGGGCCCCCAAGGGGTGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTTCTTATAAGGTTGTGGAAACCTCTCCCTAGTATACGCGTTTTAAAAACCTTAAAGGGAAGCTCGAAAGGGGAAGTTGAAAGAGGACAATATATGCTAGCGGTGGGCTTGAGTTGTTACATTTATGTAGAGTTTAAGGATCAAAATAGATATTTCGAAATTCATAGTTCTAAATGAACATGTTTTGACAGTTCATATACCATATTGAAATTTAAAACTCAATACTAATGATGATGATGATATAGTGGATTGCTTGTTGTTGTTATCTCAAGAATGAAAGTTATACCAAAAATTCTAATGAGTTTGTATAGCCTAAAGCTAGTCAGTATGATATTAATTCTGTTTACTTGGTATCATAATACACTTGTTCTTGATATAACAGAGTGAAGAAACTGAAAGAAGTGGGGATGTAAATGGGGTGACTGGGTCTTCTTTACATCATCTAATTCCAGGTAATTTCTATCGACTTTAGGCGTTATCTTATTAGATATGGATTCTTTACGAACAAATGAGTATTGTTCTTTCAGAAAATGGAGTTTCCTTCACATTAAACCTGTTTCGAGATGGATATTCTATCGGAAAGCCATCGGAGGTCAGTTTGAAAATAGCATTACTTCATTTAAGTGGCAAATAG

mRNA sequence

ATGGGCGTCTCCTTCAAAATCTCGGTAAAGGGTAAAAGGTTTCGTTCAACGCCGTGTATTACTCGATCCAGGAGCACTGCCGTTGATGATGACGAATTTAAGGATGAGTCGAGGGTTTTATCAAAGAACAAATCTTCTCTTGCTCGTAAGCTTGACAGTGAAGAAACTGAAAGAAGTGGGGATGTAAATGGGGTGACTGGGTCTTCTTTACATCATCTAATTCCAGAAAATGGAGTTTCCTTCACATTAAACCTGTTTCGAGATGGATATTCTATCGGAAAGCCATCGGAGGTCAGTTTGAAAATAGCATTACTTCATTTAAGTGGCAAATAG

Coding sequence (CDS)

ATGGGCGTCTCCTTCAAAATCTCGGTAAAGGGTAAAAGGTTTCGTTCAACGCCGTGTATTACTCGATCCAGGAGCACTGCCGTTGATGATGACGAATTTAAGGATGAGTCGAGGGTTTTATCAAAGAACAAATCTTCTCTTGCTCGTAAGCTTGACAGTGAAGAAACTGAAAGAAGTGGGGATGTAAATGGGGTGACTGGGTCTTCTTTACATCATCTAATTCCAGAAAATGGAGTTTCCTTCACATTAAACCTGTTTCGAGATGGATATTCTATCGGAAAGCCATCGGAGGTCAGTTTGAAAATAGCATTACTTCATTTAAGTGGCAAATAG

Protein sequence

MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSGDVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEVSLKIALLHLSGK

Homology

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BLAST of Csor.00g084570 vs. ExPASy Swiss-Prot
Match: F4IDB2 (Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING OS=Arabidopsis thaliana OX=3702 GN=PHL PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1   MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
           MGVSFKIS  G++FR  P I+   +T        D  + +      L+ K  + +    G
Sbjct: 1   MGVSFKISKVGRKFR--PKISTELAT-------PDSPKAI-----VLSGKPKATDDSNIG 60

Query: 61  DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEVSLKIA 104
           DV+G +  SL  + P++ VSF L+L+ +GYSIGK SE   +I+
Sbjct: 61  DVSGFSKPSLPDISPDHEVSFILSLYPNGYSIGKTSEAMQQIS 89

[Close]

BLAST of Csor.00g084570 vs. NCBI nr
Match: KAG6575428.1 (Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213 bits (543), Expect = 1.37e-69
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
           MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG
Sbjct: 1   MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60

Query: 61  DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEVSLKIALLHLSGK 110
           DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEVSLKIALLHLSGK
Sbjct: 61  DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEVSLKIALLHLSGK 110

[Close]

BLAST of Csor.00g084570 vs. NCBI nr
Match: KAG7013970.1 (hypothetical protein SDJN02_24140 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187 bits (476), Expect = 1.62e-52
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKISVKGKRFRS PCITRSRSTAVDDDEFKDESRVLSKN+SSLARKLDSEETERSG
Sbjct: 1  MGVSFKISVKGKRFRSKPCITRSRSTAVDDDEFKDESRVLSKNESSLARKLDSEETERSG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSE+
Sbjct: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEI 98

[Close]

BLAST of Csor.00g084570 vs. NCBI nr
Match: XP_022954254.1 (uncharacterized protein LOC111456565 [Cucurbita moschata])

HSP 1 Score: 185 bits (469), Expect = 1.42e-51
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKISVKGKRFRS PCITRSRSTAVDDDEFKDESRVLSKN+SSLARKLDSEETERSG
Sbjct: 1  MGVSFKISVKGKRFRSKPCITRSRSTAVDDDEFKDESRVLSKNESSLARKLDSEETERSG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          DVNGVTGSSL+HLIPENGVSFTLNLFRDGYSIGKPSE+
Sbjct: 61 DVNGVTGSSLNHLIPENGVSFTLNLFRDGYSIGKPSEI 98

[Close]

BLAST of Csor.00g084570 vs. NCBI nr
Match: XP_023548516.1 (uncharacterized protein LOC111807159 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 180 bits (456), Expect = 8.03e-50
Identity = 92/98 (93.88%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKISVKGKRFRS PCITRSRSTAVDD E KDESRVLSKN+SSLA KLDSEETERSG
Sbjct: 1  MGVSFKISVKGKRFRSKPCITRSRSTAVDDGELKDESRVLSKNESSLAPKLDSEETERSG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSE+
Sbjct: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEI 98

[Close]

BLAST of Csor.00g084570 vs. NCBI nr
Match: XP_022992059.1 (uncharacterized protein LOC111488521 isoform X2 [Cucurbita maxima])

HSP 1 Score: 165 bits (418), Expect = 1.06e-44
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKISVKGKRFRS PCITRSRSTAVD DEFKD SRVLSKN+SS A KLDSEETERSG
Sbjct: 1  MGVSFKISVKGKRFRSKPCITRSRSTAVDYDEFKDGSRVLSKNESSPAPKLDSEETERSG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          DVNGVT +SL+HLIPENGVSFTLNLFRDGYSIGKPSE+
Sbjct: 61 DVNGVT-ASLNHLIPENGVSFTLNLFRDGYSIGKPSEI 97

[Close]

BLAST of Csor.00g084570 vs. ExPASy TrEMBL
Match: A0A6J1GSG1 (uncharacterized protein LOC111456565 OS=Cucurbita moschata OX=3662 GN=LOC111456565 PE=4 SV=1)

HSP 1 Score: 185 bits (469), Expect = 6.88e-52
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKISVKGKRFRS PCITRSRSTAVDDDEFKDESRVLSKN+SSLARKLDSEETERSG
Sbjct: 1  MGVSFKISVKGKRFRSKPCITRSRSTAVDDDEFKDESRVLSKNESSLARKLDSEETERSG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          DVNGVTGSSL+HLIPENGVSFTLNLFRDGYSIGKPSE+
Sbjct: 61 DVNGVTGSSLNHLIPENGVSFTLNLFRDGYSIGKPSEI 98

[Close]

BLAST of Csor.00g084570 vs. ExPASy TrEMBL
Match: A0A6J1JWJ2 (uncharacterized protein LOC111488521 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488521 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 5.14e-45
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKISVKGKRFRS PCITRSRSTAVD DEFKD SRVLSKN+SS A KLDSEETERSG
Sbjct: 1  MGVSFKISVKGKRFRSKPCITRSRSTAVDYDEFKDGSRVLSKNESSPAPKLDSEETERSG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          DVNGVT +SL+HLIPENGVSFTLNLFRDGYSIGKPSE+
Sbjct: 61 DVNGVT-ASLNHLIPENGVSFTLNLFRDGYSIGKPSEI 97

[Close]

BLAST of Csor.00g084570 vs. ExPASy TrEMBL
Match: A0A6J1JY00 (uncharacterized protein LOC111488521 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488521 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 5.14e-45
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKISVKGKRFRS PCITRSRSTAVD DEFKD SRVLSKN+SS A KLDSEETERSG
Sbjct: 1  MGVSFKISVKGKRFRSKPCITRSRSTAVDYDEFKDGSRVLSKNESSPAPKLDSEETERSG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          DVNGVT +SL+HLIPENGVSFTLNLFRDGYSIGKPSE+
Sbjct: 61 DVNGVT-ASLNHLIPENGVSFTLNLFRDGYSIGKPSEI 97

[Close]

BLAST of Csor.00g084570 vs. ExPASy TrEMBL
Match: A0A5D3C0H1 (Histone-lysine N-methyltransferase 2D isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001430 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 2.48e-37
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKIS KGKRF   P I ++ ST +DDDE KD SRV+ KN+SSLARKL+ EETER+G
Sbjct: 1  MGVSFKISQKGKRFHPKPFINQAGSTVLDDDESKDGSRVVLKNESSLARKLEGEETERNG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          +VNGVTGSSL  LIPENGVSFTLNLF+DGYSIGKPSE+
Sbjct: 61 NVNGVTGSSLGRLIPENGVSFTLNLFQDGYSIGKPSEI 98

[Close]

BLAST of Csor.00g084570 vs. ExPASy TrEMBL
Match: A0A5A7UW90 (Spt20 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G001060 PE=4 SV=1)

HSP 1 Score: 143 bits (361), Expect = 2.48e-37
Identity = 74/98 (75.51%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
          MGVSFKIS KGKRF   P I ++ ST +DDDE KD SRV+ KN+SSLARKL+ EETER+G
Sbjct: 1  MGVSFKISQKGKRFHPKPFINQAGSTVLDDDESKDGSRVVLKNESSLARKLEGEETERNG 60

Query: 61 DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEV 98
          +VNGVTGSSL  LIPENGVSFTLNLF+DGYSIGKPSE+
Sbjct: 61 NVNGVTGSSLGRLIPENGVSFTLNLFQDGYSIGKPSEI 98

[Close]

BLAST of Csor.00g084570 vs. TAIR 10
Match: AT1G72390.1 (CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 38/103 (36.89%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1   MGVSFKISVKGKRFRSTPCITRSRSTAVDDDEFKDESRVLSKNKSSLARKLDSEETERSG 60
           MGVSFKIS  G++FR  P I+   +T        D  + +      L+ K  + +    G
Sbjct: 1   MGVSFKISKVGRKFR--PKISTELAT-------PDSPKAI-----VLSGKPKATDDSNIG 60

Query: 61  DVNGVTGSSLHHLIPENGVSFTLNLFRDGYSIGKPSEVSLKIA 104
           DV+G +  SL  + P++ VSF L+L+ +GYSIGK SE   +I+
Sbjct: 61  DVSGFSKPSLPDISPDHEVSFILSLYPNGYSIGKTSEAMQQIS 89

The following BLAST results are available for this feature:

BLAST of Csor.00g084570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IDB2	1.7e-06	36.89	Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Csor.00g084570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575428.1	1.37e-69	100.00	Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING, partial [Cucurbita argyrosperma su...	[more]
KAG7013970.1	1.62e-52	96.94	hypothetical protein SDJN02_24140 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954254.1	1.42e-51	95.92	uncharacterized protein LOC111456565 [Cucurbita moschata]	[more]
XP_023548516.1	8.03e-50	93.88	uncharacterized protein LOC111807159 [Cucurbita pepo subsp. pepo]	[more]
XP_022992059.1	1.06e-44	89.80	uncharacterized protein LOC111488521 isoform X2 [Cucurbita maxima]	[more]

BLAST of Csor.00g084570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSG1	6.88e-52	95.92	uncharacterized protein LOC111456565 OS=Cucurbita moschata OX=3662 GN=LOC1114565...	[more]
A0A6J1JWJ2	5.14e-45	89.80	uncharacterized protein LOC111488521 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JY00	5.14e-45	89.80	uncharacterized protein LOC111488521 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3C0H1	2.48e-37	75.51	Histone-lysine N-methyltransferase 2D isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5A7UW90	2.48e-37	75.51	Spt20 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Csor.00g084570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72390.1	1.2e-07	36.89	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hi...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g084570.m01	Csor.00g084570.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0048574	long-day photoperiodism, flowering
biological_process	GO:0032259	methylation
biological_process	GO:0048510	regulation of timing of transition from vegetative to reproductive phase
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016604	nuclear body
cellular_component	GO:0000124	SAGA complex
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003712	transcription coregulator activity