Csor.00g081660 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g081660
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionSmall nuclear ribonucleoprotein Sm D3
LocationCsor_Chr09: 263297 .. 265536 (-)
RNA-Seq ExpressionCsor.00g081660
SyntenyCsor.00g081660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGTGCCTCTCTCTTTTTGCTTTTCGTTGTTCGTCTTAAGATTATGCAACTTTTGTTTGATAGTTGGACCTTTATGTTTGTGGTTTTCGCCTTAGTTCATTTAGTTCATTCTGCTTCTTTATCTCTAAAGCCGTGTACTTCAATATCTGGTTCAAGTACTTTTTGAACTTTGTATAAACCCTAATTTGGTTTAGTTTCCAACAATTTATAGCTTGAACAGCCACGATCTTTTTTTTTTTTTTTTTTATGACTAATTTTAATACAAAATCTGCTTAGGAAGAACCAGAAAATTTCCGGGAACAGAAAACTCTCTATATGGTAAATTTCAACATATAAGGAACAAAAATTGCATCTAGACTCCAGGCCTGACTGGTATGTCCCAAACCCAAAAGGCAACAACTGTAAAATGAGACTGAAAATCGGCAAAGCATCAAAACATGAAAAGAGTGCTAATTGCGATCTTGATTGCATGATCTGGATTGATTAAATTAACTAGGGACGAATGTTAATTGTGCACGTCGATTCATCTGCTGAGTGCGCTGTTTAATTGCAACTTTCTTGCTATGCACCTCGTAATCACCAAATTGAATAGGAGAGATCGATATTATCATAGATTCATATTGGTTAATTGGATAGTAAACGATTTCTATAAAATTGTCAAATGGATTAAGGTTTACTGATTTTCTTTGTTTAATCTGTTGGTGTTTTACTTATGTTATGGTTAATTGCTCAATGTCTCCGAGTTTTTCCCCTTTGCTTGCATGTATATAGTTGGGAGTCATGTTCTTCAGGTTCACTTTATGTGTTTTCTTCCATAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTATCTGTACCATCTCCTGTATTATAGACTATCCAATGACTTTCTTAGTTATTCGAAGGGATTTTGTCAGGATTTGGTTGGCATGCTGACATCTGTTTATGCATGATAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGTATTTCAACTTAAATCCTTTGAAATCTAGTCCTGATGAAATCCTTGCGTGCTTTTTCTTTTTCCTAACTCATGCTTTTTCAATCCTGAAGGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGTAAGTCCCATGCAGCTTAATTTTAGTACGGTGATAATTTATTTCCTCTACACATTTTGAATAAGTACGAAGATCAACTTACATGCCCCTTGTGCATTTTTTCATGTATGAGAGAAGGATTTGATCGCTGCTTGTGTGCATATCTGCCAAGAAATATAGAATCTACTTTAGTTGAAATTACTAGGATATGATCGCTATTTAATCATATCAATTTGGAAGATGTTAGGGAATGTTTCATGGCACTACGAACTTCACATTTCTCTCTCTGAGGCATCCAGAATTTAGGCACATTCACACAAAACGCAGGAACCCACAGATAGTGTTAGGGGAAGTGATTATTACTTGTGAAATCTCTTGTTAGTTTATATGTTTAAAAACAGGTTGGTGATAGATTTAGAGGGAAAACAACTAGAGTGCGTTACAAAATGTTCGTACACTTTTTAAGTTTCCAAAAGTTAACACTAGACATACTCTCTTTTTCAGGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGTGATGAAACCATGAATATAGTTTGTTATATCCTTAGTTCAAGCCCAGAGAGCCGTTGGAATATTGATCATCAAGTTTCTTTAGTTCCGGTATTGACATCCTCAACATTGAAGAAGGCTATGTACGTTGTTCATTTTGTTGAAAGTGGGCGATTGACCATTATATATCTTCAACTTCATAATCTAATTTTTACTTCAGGCGATTTTATGTTGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAA

mRNA sequence

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGCGATTTTATGTTGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAA

Coding sequence (CDS)

ATGAGCAGGAGCTTGGGAATTCCAGTGAAGCTACTCCATGAGGCCGCGGGTCACGTTGTGTCGGTGGAGCTTAAAAGCGGTGAACTTTACAGAGGAAGTATGATCGAGTGTGAGGATAACTGGAACTGCCAGCTCGAAAACATCACCTACACTGCTAAGGATGGGAAGGTCTCGCAACTTGAGCATGTTTTCATCCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGCTGAAGAATGCTCCAATGTTCAAGCGTCTCGATGCTAGAATTAAAGGAAAGGGCGCCTCACTTGGTGTTGGCAGAGGCAGGGCTGTTGCTATGCGAGCTAAAGCTCAAGCTGCTGGCCGTGGAGGTGCAACTGGTCGGGGTGCTGTGCCATCTGCCCGAAGGCGATTTTATGTTGAGATCGAACAATCTTTTACCCCCATGTTCATCTTTGTTATGTATGTACCGGACGTTCTTTGCACCTATATCACCATTGGAGAATTGTCTTTGTGCCATCTATTCTACTCTAATCGTTGGCTGTTGTTAAGGTAA

Protein sequence

MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATGRGAVPSARRRFYVEIEQSFTPMFIFVMYVPDVLCTYITIGELSLCHLFYSNRWLLLR
Homology
[Close]
BLAST of Csor.00g081660 vs. ExPASy Swiss-Prot
Match: Q9LM92 (Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.6e-55
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K  A    G
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 TGGRGAVPPVRR 131

[Close]
BLAST of Csor.00g081660 vs. ExPASy Swiss-Prot
Match: Q9S7E6 (Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.1e-54
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    G GG
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAKGTGRGTGG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 --GRGAVPPVRR 128

[Close]
BLAST of Csor.00g081660 vs. ExPASy Swiss-Prot
Match: P62318 (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]
BLAST of Csor.00g081660 vs. ExPASy Swiss-Prot
Match: P62320 (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]
BLAST of Csor.00g081660 vs. ExPASy Swiss-Prot
Match: P62323 (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 0 

Query: 4   SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHV 63
           S+G+P+K+LHEA GH+V+ E  +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V
Sbjct: 2   SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV 61

Query: 64  FIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATG 123
           +IRGSK+RF+++PDMLKNAPM K +    K K    G GRG+A  ++A+  A GRG   G
Sbjct: 62  YIRGSKIRFLILPDMLKNAPMLKSM----KNKNQGSGAGRGKAAILKAQVAARGRGRGMG 121

Query: 124 RGAVPSARR 133
           RG +   RR
Sbjct: 122 RGNIFQKRR 126

[Close]
BLAST of Csor.00g081660 vs. NCBI nr
Match: KAG6591223.1 (Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 353 bits (906), Expect = 1.13e-122
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARRRFYVEIEQSFTPMFIFVMYVPDVLCTYITIGELSLCHLFYSNRWLLLR 180
           ATGRGAVPSARRRFYVEIEQSFTPMFIFVMYVPDVLCTYITIGELSLCHLFYSNRWLLLR
Sbjct: 121 ATGRGAVPSARRRFYVEIEQSFTPMFIFVMYVPDVLCTYITIGELSLCHLFYSNRWLLLR 180

[Close]
BLAST of Csor.00g081660 vs. NCBI nr
Match: XP_022937091.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima] >XP_023534840.1 small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023534841.1 small nuclear ribonucleoprotein SmD3b-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG6608630.1 Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024110.1 Small nuclear ribonucleoprotein SmD3b [Cucurbita argyrosperma subsp. argyrosperma] >KAG7037947.1 Small nuclear ribonucleoprotein SmD3b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256 bits (654), Expect = 5.64e-85
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 132
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]
BLAST of Csor.00g081660 vs. NCBI nr
Match: XP_022940723.1 (small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_022981932.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita maxima])

HSP 1 Score: 255 bits (651), Expect = 1.62e-84
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 132
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]
BLAST of Csor.00g081660 vs. NCBI nr
Match: XP_023522400.1 (small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254 bits (650), Expect = 2.29e-84
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 132
           ATGRG VPSARR
Sbjct: 121 ATGRGVVPSARR 132

[Close]
BLAST of Csor.00g081660 vs. NCBI nr
Match: XP_022151728.1 (small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151731.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia])

HSP 1 Score: 253 bits (645), Expect = 1.33e-83
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 ATGRGAVPSARR 132
           ATGRGA+PSARR
Sbjct: 121 ATGRGAMPSARR 132

[Close]
BLAST of Csor.00g081660 vs. ExPASy TrEMBL
Match: A0A6J1IBE9 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111473626 PE=3 SV=1)

HSP 1 Score: 256 bits (654), Expect = 2.73e-85
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 132
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]
BLAST of Csor.00g081660 vs. ExPASy TrEMBL
Match: A0A6J1F9D0 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111443497 PE=3 SV=1)

HSP 1 Score: 256 bits (654), Expect = 2.73e-85
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 132
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]
BLAST of Csor.00g081660 vs. ExPASy TrEMBL
Match: A0A6J1IVB4 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC111480932 PE=3 SV=1)

HSP 1 Score: 255 bits (651), Expect = 7.82e-85
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 132
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]
BLAST of Csor.00g081660 vs. ExPASy TrEMBL
Match: A0A6J1FQ35 (Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111446231 PE=3 SV=1)

HSP 1 Score: 255 bits (651), Expect = 7.82e-85
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+IKGKGASLGVGRGRAVAMRAKAQAAGRGG
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120

Query: 121 ATGRGAVPSARR 132
           ATGRGAVPSARR
Sbjct: 121 ATGRGAVPSARR 132

[Close]
BLAST of Csor.00g081660 vs. ExPASy TrEMBL
Match: A0A6J1DDX8 (Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC111019638 PE=3 SV=1)

HSP 1 Score: 253 bits (645), Expect = 6.42e-84
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRG 
Sbjct: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGS 120

Query: 121 ATGRGAVPSARR 132
           ATGRGA+PSARR
Sbjct: 121 ATGRGAMPSARR 132

[Close]
BLAST of Csor.00g081660 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 215.3 bits (547), Expect = 4.0e-56
Identity = 111/132 (84.09%), Postives = 118/132 (89.39%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGSKVRFMVIPD+LK+APMFKRLDARIKGK +SLGVGRGR  AMR K  A    G
Sbjct: 61  EHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLGVGRGRG-AMRGKPAAGPGRG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 TGGRGAVPPVRR 131

[Close]
BLAST of Csor.00g081660 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 211.5 bits (537), Expect = 5.8e-55
Identity = 110/132 (83.33%), Postives = 115/132 (87.12%), Query Frame = 0 

Query: 1   MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60
           MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL
Sbjct: 1   MSRSLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQL 60

Query: 61  EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGG 120
           EHVFIRGS VRF+VIPDMLKNAPMFK  D R KGK ASLGVGRGR  AMRAK    G GG
Sbjct: 61  EHVFIRGSLVRFLVIPDMLKNAPMFK--DVRGKGKSASLGVGRGRGAAMRAKGTGRGTGG 120

Query: 121 ATGRGAVPSARR 133
             GRGAVP  RR
Sbjct: 121 --GRGAVPPVRR 128

[Close]
BLAST of Csor.00g081660 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-10
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 0 

Query: 7   IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 2   LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 61

Query: 67  RGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGGATGRG 126
           RG+ ++++ +PD + +    ++   R   K   +G GRGR V       A GRG  T  G
Sbjct: 62  RGNTIKYLRVPDEVIDKVQEEK--TRTDRKPPGVGRGRGRGV---DDGGARGRGRGTSMG 121

Query: 127 AVPSAR 132
            +   R
Sbjct: 122 KMGGNR 122

[Close]
BLAST of Csor.00g081660 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-08
Identity = 35/115 (30.43%), Postives = 58/115 (50.43%), Query Frame = 0 

Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  T K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGKGASLG---VGRGRAVAMRAKAQAAGRGG 121
            +R+ ++PD L    +      RIK K  + G    GRGR    R + +  GRGG
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRG---RGRGRGRGRGG 115

[Close]
BLAST of Csor.00g081660 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 6.9e-08
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = 0 

Query: 9   VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
           V+ L +     VS+ELK+G +  G++   + + N  L+ +  + K      L+H+ +RG+
Sbjct: 4   VRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGN 63

Query: 69  KVRFMVIPDMLKNAPMFKRLDARIKGK----GASLGVGRGRAVAMRAKAQAAGRGGATGR 126
            +R+ ++PD L    +      R+K K    G ++G GRGR           GRG   GR
Sbjct: 64  NIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAVGRGRGR-----------GRGRGRGR 113

The following BLAST results are available for this feature:
BLAST of Csor.00g081660 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LM925.6e-5584.09Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana OX=3702 GN=SMD3B P... [more]
Q9S7E68.1e-5483.33Small nuclear ribonucleoprotein SmD3a OS=Arabidopsis thaliana OX=3702 GN=SMD3A P... [more]
P623181.4e-3454.26Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens OX=9606 GN=SNRPD3 PE=1 SV=... [more]
P623201.4e-3454.26Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus OX=10090 GN=Snrpd3 PE=1 SV... [more]
P623231.4e-3454.26Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis OX=8355 GN=snrpd3 PE=2 S... [more]
BLAST of Csor.00g081660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6591223.11.13e-122100.00Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. so... [more]
XP_022937091.15.64e-85100.00small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] >XP_022974862.1 ... [more]
XP_022940723.11.62e-8499.24small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] >XP_0... [more]
XP_023522400.12.29e-8499.24small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo][more]
XP_022151728.11.33e-8398.48small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] >XP_022151729.1... [more]
BLAST of Csor.00g081660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IBE92.73e-85100.00Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11147362... [more]
A0A6J1F9D02.73e-85100.00Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111443... [more]
A0A6J1IVB47.82e-8599.24Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita maxima OX=3661 GN=LOC11148093... [more]
A0A6J1FQ357.82e-8599.24Small nuclear ribonucleoprotein Sm D3 OS=Cucurbita moschata OX=3662 GN=LOC111446... [more]
A0A6J1DDX86.42e-8498.48Small nuclear ribonucleoprotein Sm D3 OS=Momordica charantia OX=3673 GN=LOC11101... [more]
BLAST of Csor.00g081660 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G20580.14.0e-5684.09Small nuclear ribonucleoprotein family protein [more]
AT1G76300.15.8e-5583.33snRNP core protein SMD3 [more]
AT5G27720.11.9e-1032.54Small nuclear ribonucleoprotein family protein [more]
AT4G02840.13.1e-0830.43Small nuclear ribonucleoprotein family protein [more]
AT3G07590.16.9e-0828.93Small nuclear ribonucleoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 10..75
e-value: 5.2E-17
score: 72.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..74
e-value: 7.3E-15
score: 54.4
NoneNo IPR availableGENE3D2.30.30.100coord: 3..86
e-value: 3.7E-32
score: 111.7
NoneNo IPR availablePANTHERPTHR23338:SF54SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 1..128
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..128
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 8..77
e-value: 5.66807E-46
score: 143.43
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 8..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g081660.m01Csor.00g081660.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0000387 spliceosomal snRNP assembly
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005829 cytosol
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0097526 spliceosomal tri-snRNP complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0005681 spliceosomal complex
molecular_function GO:0003723 RNA binding