Csor.00g075710 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g075710
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionGlutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
LocationCsor_Chr01: 11544883 .. 11547465 (+)
RNA-Seq ExpressionCsor.00g075710
SyntenyCsor.00g075710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGTGGAGCTCTGCGTTTGCTCAAAGGAGCTTCATCACTTCCATCGTTGAATCCCCAAATCTTCATCTCTACCAGTTTGAATTCGCTTCCTGTTTCTAGTATCAGAATCCGGAAATGTTCGACTGCTCCTGGAATTCGTGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCAATCCGAATGAGGTATGTGAGGCCTTCACCATCTCAATGTTTTCTTCTGTTTCTTCGATCTTCTTCTTCTTCAAGTAAAATCCGCTTCTCGCTTTCAGGTTGAAGAATTTGCTCCTAAGATTCGACAGGTTGTTGACTGGTAAGCTTCGCTCTCTTTCTCTCTCTCTCTCTCTCTCACGCACACAGAAACTGATAGACCTTGAAACATATTAGGCATCTAGATAAATTTAGGGTAAAAGAATGCTGTTCAAAGTATGTGACCTCCGCGACTGTGGCTTCTGTAGGAAACACTCAGACTTGGTTATCGTAAATGTTTGGTTGTTATCTTAGGTGAGACTGAAAAGATGATTGTATTTGTTGGTGTCTGGCCTCTAGGGAACTTACTATGAGACAGTTGCCTCTTATGCCCTACACATTGAGGGGAATTCTTCAGGGGCAGGTTGTAAAATGAGATTCTATGAATTTACATTTACTTCCCTCAGCTGAAGAAAGGGTGACAAGATCAAATGAGATTATGTTGTTGTCTTTATAACCTGTTTTACATTAACTTTCGGGGTTAACGATGATCTTATGAGCGAATTGGAACATTTAATGCAGTTCTGTTATCTCTAGTTTTGCTTTGAAATTTTGAATACTTGAAACTTCCATTTCCTCCCAGTGTTCATTGTTGATTGCTTAACAATGTGCAAGCATCAAACTCAGGAATCTAGAGGACCCTCCACATTAGGATTACTGTTGTAATCATCCGCATCTTTCTTCTTCTTCTTCAAATAGTGAAAAGTTACAAAAGGTGCATTATAGGGGATTACAAAGGACAAGCCCAATTAGGACTAAATCAAGCATAGAATCATGGTTACGAAAAATAAGAGTGCACCAAGGTAAGCAAACTGAACAAATTAAATCCCAAACTTCCTACACTACAGCCATTTCTGTTGCAATAATAATATTTGTAAACAGCCATTTAACCATATTTGCTAATAATGATGTTTATCTGGGGATTTTTTTTTTTTTCTTTCTCTTTTGGGAGAAATGACCCGCCAATTTGGATGTTAAAGCCACATTTCTGTTTTTGAGCTTGTCCAAGTCGAGATCTTCTTGCTCAGGATTGCAAGACCAAGTCTGCACTTAATGAGGTGACTTCACCGCTGTGGCACCATCCCCTTATGCCCACAAAATGTCTTTTTACACTCTTTTTTATTTTGGAGATTTTTTTAACAAATTCTTAAAAGTAAAAGTAGTAGGTTGAGATGCTGGCTAGAACTGACTGGATTAAAATCTTATATCTGTATGTCGGTCGAGTCACTCAAGAGTTTAGACTATGTACTGAGATAGAAGCACTGGGAACATGATCTATATATCTTTTTATGAAATTGTTCGTTCTATTAACTCTCTGTTTGAGTTTTTCATTCTTCCAATGAAATTGTTCATTCGGTTAAGTTTATTCTCTTGGCTGTTGTGGTTTCTAATAACTTAATATAATAATATTATGTTTTAGGTTTGGGCAGCTCCAGGCGGTTGATCTTCAAAGCATTGAGCCTTCCATTAGGGCAGGTACATGCAACAACTCTTAGGAGTTCATTACTGTTAATCATTTTGCAACTTGTTTGCCGTTCTTCTAGCCATGCTTTCGCTTGTTTCTCACTGTTAAGTGTTGATTTCAAATCGCACGTCAATTCAAAATGGAAATTTAAATCACATAATCGTTATTTTCATTGGAAAATAATGATCATAAGATGTGGAGGCATTGTCTACTTCTCATGACGACACAGGTGAGGCAATGAAGCACATAATGGTGGGGGATAGCAGCAATAGGACCCGAACTTAGCACTGTTTACTTGAGCTATCATGGCCAGGATAATTGATTACGATTTCAGATACCAAAAAAGCTGCTCCCCCACCCACAGATGTTTATATTTCTTTCTGGGAGATTTTTGGATCATAATTTTATCAAGTTATTAAAATGCTAAAAACCTCAACACAGTGAGGAATCAGACCCTTCACAATAGTATGATATTGTCCACCTTGAGCATAAGCTCTCATGGCTTTGCTTTTGGCTTCCCTAAAAGGCCTCTTACCGATGAAAATGTATTCCTTACTTATAAACACATGATCAACCTCTTAATTAGCCAACGTGGGACTCCTAAAGATTTTCCTAATATTTACAGATACTGAAGGTGGCAATCAGCGGGATGATGTTTCCGAAACATTCGAAAACAGGTAACCTGGTTATTTTGCAACTTGTGCTGTTACAACATTGGGCAGGAAATTTCAGTCCTAACTCCATTTTTTCTTTTGTTTACCCTCAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

mRNA sequence

ATGGGAAGTGGAGCTCTGCGTTTGCTCAAAGGAGCTTCATCACTTCCATCGTTGAATCCCCAAATCTTCATCTCTACCAGTTTGAATTCGCTTCCTGTTTCTAGTATCAGAATCCGGAAATGTTCGACTGCTCCTGGAATTCGTGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCAATCCGAATGAGGTTGAAGAATTTGCTCCTAAGATTCGACAGGTTGTTGACTGGTTTGGGCAGCTCCAGGCGGTTGATCTTCAAAGCATTGAGCCTTCCATTAGGGCAGATACTGAAGGTGGCAATCAGCGGGATGATGTTTCCGAAACATTCGAAAACAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

Coding sequence (CDS)

ATGGGAAGTGGAGCTCTGCGTTTGCTCAAAGGAGCTTCATCACTTCCATCGTTGAATCCCCAAATCTTCATCTCTACCAGTTTGAATTCGCTTCCTGTTTCTAGTATCAGAATCCGGAAATGTTCGACTGCTCCTGGAATTCGTGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCAATCCGAATGAGGTTGAAGAATTTGCTCCTAAGATTCGACAGGTTGTTGACTGGTTTGGGCAGCTCCAGGCGGTTGATCTTCAAAGCATTGAGCCTTCCATTAGGGCAGATACTGAAGGTGGCAATCAGCGGGATGATGTTTCCGAAACATTCGAAAACAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

Protein sequence

MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLAETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE
Homology
[Close]
BLAST of Csor.00g075710 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 91/145 (62.76%), Postives = 111/145 (76.55%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGS AL LLK  ++      +  + TS ++   S   IR  + +   R++L PPD+PRLA
Sbjct: 1   MGSRALLLLKATTA------ETLLFTSKSTF--SKALIRNSTRSFSTRSALLPPDLPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISL P+EVEEFAPKIRQV+DWFGQLQAVDLQSIEPSIRADTEG N RDD  ETFEN
Sbjct: 61  ETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDDSPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 146
           REA+I A+P ++EPY++VPKVLNK+
Sbjct: 121 REAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]
BLAST of Csor.00g075710 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-39
Identity = 94/146 (64.38%), Postives = 107/146 (73.29%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRI-RKCSTAPGIRASLQPPDVPRL 60
           MGS AL LLK A  LP L  QI         P S +   R+ S      +SLQPPDV RL
Sbjct: 1   MGSRALLLLKVA--LP-LKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRL 60

Query: 61  AETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFE 120
           AETARISLN NEVEEFAPKIRQV+DWFGQLQAVDL S+EP+IRAD+EG N RDDV ETF 
Sbjct: 61  AETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRADSEGENLRDDVPETFS 120

Query: 121 NREAMIGAVPVFDEPYIRVPKVLNKE 146
            REA+I AVP +++PY++VPKVLNKE
Sbjct: 121 EREAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]
BLAST of Csor.00g075710 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.0e-35
Identity = 86/145 (59.31%), Postives = 103/145 (71.03%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGS A+ LLKG S  P  +  +F+       P  SIR R  + A    +SL+PPDV RLA
Sbjct: 1   MGSRAVLLLKGPS--PPKHSILFLLNHKKISPAPSIR-RFTTKATANGSSLEPPDVARLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISL P +VEEF PKIRQV+DW   L +VDL S+EPSIRADTEG N R D  ETFEN
Sbjct: 61  ETARISLTPQQVEEFGPKIRQVIDWHA-LLSVDLDSVEPSIRADTEGDNLRHDNPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 146
           REA+I AVP +++PY++VPKVLNKE
Sbjct: 121 REAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]
BLAST of Csor.00g075710 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-33
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 0 

Query: 50  SLQPPDVPRLAETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGN 109
           +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFGQLQAVDL+S+EPS+RA T  GN
Sbjct: 57  ALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGN 116

Query: 110 Q-RDDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 146
             R+D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Sbjct: 117 SLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Csor.00g075710 vs. ExPASy Swiss-Prot
Match: Q7XZZ1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATC PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-33
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 0 

Query: 50  SLQPPDVPRLAETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGN 109
           +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFGQLQAVDL+S+EPS+RA T  GN
Sbjct: 57  ALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGN 116

Query: 110 Q-RDDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 146
             R+D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Sbjct: 117 SLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]
BLAST of Csor.00g075710 vs. NCBI nr
Match: XP_022941306.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022941307.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6608102.1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282 bits (721), Expect = 1.31e-95
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Csor.00g075710 vs. NCBI nr
Match: XP_023521629.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo] >XP_023521637.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276 bits (707), Expect = 1.78e-93
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           M SGALRLLKGASSLPSLNPQIFISTSLNSLPVS+IRIRKCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNP+EVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Csor.00g075710 vs. NCBI nr
Match: XP_022981070.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_022981071.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 271 bits (694), Expect = 1.71e-91
Identity = 138/145 (95.17%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGSGALRLLKGASSLP LNPQIFISTSLN+LPVS+IRI+KCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPLLNPQIFISTSLNTLPVSNIRIQKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNP+EVEEFAPKIRQVVDWFGQL+AVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLEAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REA+IGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REALIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Csor.00g075710 vs. NCBI nr
Match: KAG7031739.1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (614), Expect = 4.31e-79
Identity = 133/159 (83.65%), Postives = 134/159 (84.28%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFE- 120
           ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRAD E      D  E  + 
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADVEALPTSHDTGEAMKH 120

Query: 121 -------NR------EAMIGAVPVFDEPYIRVPKVLNKE 145
                  NR      EAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 IVVGDSSNRTRNLPLEAMIGAVPVFDEPYIRVPKVLNKE 159

[Close]
BLAST of Csor.00g075710 vs. NCBI nr
Match: XP_038897282.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida] >XP_038897283.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 236 bits (603), Expect = 1.28e-77
Identity = 123/145 (84.83%), Postives = 130/145 (89.66%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGS AL LLKGASS PSL  +IFIST L+SLP S IRIRKCSTA  I ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSCPSLKLRIFISTGLHSLPASLIRIRKCSTASRILASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISL P +VEEFAPKIRQVVDWFGQLQ VDLQSIEP+IRADTEGGNQR+D+ ETFEN
Sbjct: 61  ETARISLTPTQVEEFAPKIRQVVDWFGQLQTVDLQSIEPAIRADTEGGNQRNDIPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g075710 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 6.32e-96
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Csor.00g075710 vs. ExPASy TrEMBL
Match: A0A6J1IVG1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111480328 PE=3 SV=1)

HSP 1 Score: 271 bits (694), Expect = 8.29e-92
Identity = 138/145 (95.17%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGSGALRLLKGASSLP LNPQIFISTSLN+LPVS+IRI+KCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPLLNPQIFISTSLNTLPVSNIRIQKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNP+EVEEFAPKIRQVVDWFGQL+AVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLEAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REA+IGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REALIGAVPVFDEPYIRVPKVLNKE 145

[Close]
BLAST of Csor.00g075710 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 1.90e-77
Identity = 124/147 (84.35%), Postives = 130/147 (88.44%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSL--NSLPVSSIRIRKCSTAPGIRASLQPPDVPR 60
           MGS AL LLKGA SLPSL  QIFI      ++LP+SS +IRKCST P IRASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETF 120
           LAETARISL P EVEEFAPKIRQVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+D+SETF
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 145
           ENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]
BLAST of Csor.00g075710 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 235 bits (599), Expect = 2.52e-77
Identity = 122/145 (84.14%), Postives = 130/145 (89.66%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGS AL LLKGASS PSL  QIFIST+ +SLPVS+I IRK STA G+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           +TARISL P +VEEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV ETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g075710 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 235 bits (599), Expect = 2.52e-77
Identity = 122/145 (84.14%), Postives = 130/145 (89.66%), Query Frame = 0 

Query: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60
           MGS AL LLKGASS PSL  QIFIST+ +SLPVS+I IRK STA G+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           +TARISL P +VEEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV ETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]
BLAST of Csor.00g075710 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 132.5 bits (332), Expect = 2.7e-31
Identity = 60/109 (55.05%), Postives = 85/109 (77.98%), Query Frame = 0 

Query: 37  RIRKCSTAPGIRASLQPPDVPRLAETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQS 96
           RI +  ++    + LQPPDV RLA+TARISL P E+EE   KIR+V+DWFGQLQ VD+ S
Sbjct: 47  RIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNS 106

Query: 97  IEPSIRADTEGGNQRDDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 146
           +EP+IRA+ +GGN R+D  ETF+NR+++  ++P F++ Y++VPK+LNKE
Sbjct: 107 VEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

The following BLAST results are available for this feature:
BLAST of Csor.00g075710 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
D7STK21.7e-4162.76Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi... [more]
B9RRX22.7e-3964.38Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri... [more]
B9INH01.0e-3559.31Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po... [more]
A2XK573.7e-3370.10Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
Q7XZZ13.7e-3370.10Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or... [more]
BLAST of Csor.00g075710 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022941306.11.31e-95100.00glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_023521629.11.78e-9397.93glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_022981070.11.71e-9195.17glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like ... [more]
KAG7031739.14.31e-7983.65Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu... [more]
XP_038897282.11.28e-7784.83glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Beni... [more]
BLAST of Csor.00g075710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FM336.32e-96100.00Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1IVG18.29e-9295.17Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A6J1CQ901.90e-7784.35Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Mo... [more]
A0A5A7T6R52.52e-7784.14Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
A0A1S3CQE82.52e-7784.14Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu... [more]
BLAST of Csor.00g075710 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G32915.12.7e-3155.05FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.20.60coord: 47..93
e-value: 1.0E-7
score: 33.8
IPR003837Glu-tRNAGln amidotransferase C subunitPFAMPF02686Glu-tRNAGlncoord: 67..138
e-value: 7.7E-10
score: 38.9
IPR003837Glu-tRNAGln amidotransferase C subunitTIGRFAMTIGR00135TIGR00135coord: 55..142
e-value: 9.9E-15
score: 52.6
IPR003837Glu-tRNAGln amidotransferase C subunitPANTHERPTHR15004UNCHARACTERIZEDcoord: 28..145
IPR003837Glu-tRNAGln amidotransferase C subunitHAMAPMF_00122GatCcoord: 50..143
score: 18.655514
IPR036113Glu-tRNAGln amidotransferase superfamily, subunit CSUPERFAMILY141000Glu-tRNAGln amidotransferase C subunitcoord: 51..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g075710.m01Csor.00g075710.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006450 regulation of translational fidelity
cellular_component GO:0009507 chloroplast
cellular_component GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005524 ATP binding
molecular_function GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function GO:0016740 transferase activity