Csor.00g075230 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g075230
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	chaperone protein DnaJ-like
Location	Csor_Chr01: 11893438 .. 11894211 (+)
RNA-Seq Expression	Csor.00g075230
Synteny	Csor.00g075230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTTCGTTTTTCAGTGCCTTGCAACTCAAAATTCTTCTCATTCTTGGAAATTCCTGTAGTGAACTATAAAAATCATTTGGAAATTCCTCGACTGTTAGGTGTTCTCATTTGGTAATCGAATTCCTCAACAGTTGGAGGTTGTGGCAATCAGAAGCTCAACCTGATTAACAATGGCTTCCATTATTCTCCAGTTGCTGGATTCCTTCATCTAAATAGTAAGGTTCTGCTTCTCCTGTTTGTAATTTGTTTTTCGATTACTCAAAATGAAATGCAATGTGTATATTCTTTGGAAATTGAGACGGTAGTGTGTTTCTGATCGAATAGGCTGCGAAGAGTGGTCGGAACATAAAACCTAATAGCGTGATTTGTGATGATTGTGATGGAATCGATAGGTCGATTTATAACTTGTTGCTAACGATTTTGCGAACGCTGATTTTTTTGTAATTTGAATGAAATAGTTGTTGTTATTTGCTCATAATGCCAAGGAAGTGGAGTTGATGCTGTTGATTTCTTCAATGGACAATTCATAGCCGGTGCATCTTGTTGGTTGTGCGGGTAATCTGTGCCCTAATTCAACTATTTGATTCAGCATTCAAATTACAACTGAAGAAGAAGTATTATGACCTGCAATTGACTGATAAACTGAGCTGTTTCTATTTTCTCATGTTTTCCCCTGAAAATTTGAATTCTACTTGGTGTTGTTTGTTCTGTTGATCAATGGCTTTGTGTTGCAGTGGGAACAAAGGAAATGCTGTGTGGGAATTGTAA

mRNA sequence

ATGGCGTCTTCGTTTTTCAGTGCCTTGCAACTCAAAATTCTTCTCATTCTTGGAAATTCCTTTGGAGGTTGTGGCAATCAGAAGCTCAACCTGATTAACAATGGCTTCCATTATTCTCCAGTTGCTGGATTCCTTCATCTAAATAGTAAGGCTGCGAAGAGTGGTCGGAACATAAAACCTAATAGCGTGATTTGTGATGATTGTGATGGAATCGATAGTGGAGTTGATGCTGTTGATTTCTTCAATGGACAATTCATAGCCGGTGCATCTTGTTGGTTGTGCGGTGGGAACAAAGGAAATGCTGTGTGGGAATTGTAA

Coding sequence (CDS)

ATGGCGTCTTCGTTTTTCAGTGCCTTGCAACTCAAAATTCTTCTCATTCTTGGAAATTCCTTTGGAGGTTGTGGCAATCAGAAGCTCAACCTGATTAACAATGGCTTCCATTATTCTCCAGTTGCTGGATTCCTTCATCTAAATAGTAAGGCTGCGAAGAGTGGTCGGAACATAAAACCTAATAGCGTGATTTGTGATGATTGTGATGGAATCGATAGTGGAGTTGATGCTGTTGATTTCTTCAATGGACAATTCATAGCCGGTGCATCTTGTTGGTTGTGCGGTGGGAACAAAGGAAATGCTGTGTGGGAATTGTAA

Protein sequence

MASSFFSALQLKILLILGNSFGGCGNQKLNLINNGFHYSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGIDSGVDAVDFFNGQFIAGASCWLCGGNKGNAVWEL

Homology

[Close]

BLAST of Csor.00g075230 vs. ExPASy Swiss-Prot
Match: Q9SN73 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BSD2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 50  KAAKSG-RNIKPNSVICDDCDG---------IDSGVDAVDFFNGQFIAGASCWLCGGNK 99
           KAA +  +  KPNS++C +C+G            GV+ +D FNGQF AGA CWLC G K
Sbjct: 56  KAANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKK 114

[Close]

BLAST of Csor.00g075230 vs. ExPASy Swiss-Prot
Match: Q9XF14 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Zea mays OX=4577 GN=BSD2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-05
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 48  NSKAAKSGRNIKPNSVICDDCDG---------IDSGVDAVDFFNGQFIAGASCWLCGGNK 99
           N ++AK  + +K  S++C DC+G           +GV++VD+F G+F AG+ CWLC G +
Sbjct: 47  NDQSAKKHQKVK--SILCQDCEGNGAIVCTKCEGNGVNSVDYFEGRFKAGSLCWLCRGKR 104

[Close]

BLAST of Csor.00g075230 vs. NCBI nr
Match: KAG6608150.1 (Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219 bits (559), Expect = 3.43e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MASSFFSALQLKILLILGNSFGGCGNQKLNLINNGFHYSPVAGFLHLNSKAAKSGRNIKP 60
           MASSFFSALQLKILLILGNSFGGCGNQKLNLINNGFHYSPVAGFLHLNSKAAKSGRNIKP
Sbjct: 1   MASSFFSALQLKILLILGNSFGGCGNQKLNLINNGFHYSPVAGFLHLNSKAAKSGRNIKP 60

Query: 61  NSVICDDCDGIDSGVDAVDFFNGQFIAGASCWLCGGNKGNAVWEL 105
           NSVICDDCDGIDSGVDAVDFFNGQFIAGASCWLCGGNKGNAVWEL
Sbjct: 61  NSVICDDCDGIDSGVDAVDFFNGQFIAGASCWLCGGNKGNAVWEL 105

[Close]

BLAST of Csor.00g075230 vs. NCBI nr
Match: XP_022148277.1 (uncharacterized protein LOC111016947 [Momordica charantia])

HSP 1 Score: 114 bits (284), Expect = 5.74e-30
Identity = 55/88 (62.50%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 20  SFGGCGNQKLNLINNGFHYSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGID------- 79
           + GGC N KLNLI+NG HYSP A F HLN KAAK+ RN KPNS+IC DCDG         
Sbjct: 20  AIGGCSNHKLNLIDNGLHYSPAARFPHLNGKAAKNDRNTKPNSMICGDCDGNGAVLCSQC 79

Query: 80  --SGVDAVDFFNGQFIAGASCWLCGGNK 98
             SGV+  D FNGQF AG SCWLCGG K
Sbjct: 80  KGSGVNPADVFNGQFKAGESCWLCGGKK 107

[Close]

BLAST of Csor.00g075230 vs. NCBI nr
Match: XP_038899028.1 (protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 109 bits (273), Expect = 2.84e-28
Identity = 57/86 (66.28%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 23  GCGNQKLNLINNGFH-YSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGIDS-------- 82
           G  NQKLNL+NNGF+ YS  A F HLN KAAK+ RN KPNSVIC DCDG  +        
Sbjct: 24  GSSNQKLNLVNNGFYDYSSPARFPHLNIKAAKNDRNTKPNSVICGDCDGNGAVLCSQCKG 83

Query: 83  -GVDAVDFFNGQFIAGASCWLCGGNK 98
            GV+AVDFFNGQF AGASCWLCGG K
Sbjct: 84  NGVNAVDFFNGQFKAGASCWLCGGRK 109

[Close]

BLAST of Csor.00g075230 vs. NCBI nr
Match: XP_004136477.1 (protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic isoform X2 [Cucumis sativus] >KGN60105.1 hypothetical protein Csa_001346 [Cucumis sativus])

HSP 1 Score: 106 bits (265), Expect = 4.78e-27
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 24  CGNQKLNLINNGFH-YSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGIDS--------- 83
           C NQKLNLI+NGFH YS  A F HL  KAAK+ RN KPNSVIC DCDG  +         
Sbjct: 26  CSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNTKPNSVICGDCDGNGAVVCSQCKGK 85

Query: 84  GVDAVDFFNGQFIAGASCWLCGGNK 98
           GV+AVDFFNGQF AG SCWLCGG K
Sbjct: 86  GVNAVDFFNGQFKAGESCWLCGGRK 110

[Close]

BLAST of Csor.00g075230 vs. NCBI nr
Match: XP_008466412.1 (PREDICTED: chaperone protein DnaJ-like [Cucumis melo] >TYK31430.1 chaperone protein DnaJ-like [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (259), Expect = 3.78e-26
Identity = 55/83 (66.27%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 24  CGNQKLNLINNGFH-YSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGIDS--------- 83
           C NQKLNLI+NGFH YS  A F HL  KAAK+ RN KPNSVIC DCDG  +         
Sbjct: 25  CSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNTKPNSVICGDCDGNGAVLCSQCKGN 84

Query: 84  GVDAVDFFNGQFIAGASCWLCGG 96
           GV+AVDFFNGQF AG SCWLCGG
Sbjct: 85  GVNAVDFFNGQFKAGKSCWLCGG 107

[Close]

BLAST of Csor.00g075230 vs. ExPASy TrEMBL
Match: A0A6J1D4M9 (uncharacterized protein LOC111016947 OS=Momordica charantia OX=3673 GN=LOC111016947 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 2.78e-30
Identity = 55/88 (62.50%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 20  SFGGCGNQKLNLINNGFHYSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGID------- 79
           + GGC N KLNLI+NG HYSP A F HLN KAAK+ RN KPNS+IC DCDG         
Sbjct: 20  AIGGCSNHKLNLIDNGLHYSPAARFPHLNGKAAKNDRNTKPNSMICGDCDGNGAVLCSQC 79

Query: 80  --SGVDAVDFFNGQFIAGASCWLCGGNK 98
             SGV+  D FNGQF AG SCWLCGG K
Sbjct: 80  KGSGVNPADVFNGQFKAGESCWLCGGKK 107

[Close]

BLAST of Csor.00g075230 vs. ExPASy TrEMBL
Match: A0A0A0LDP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878740 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 2.32e-27
Identity = 56/85 (65.88%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 24  CGNQKLNLINNGFH-YSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGIDS--------- 83
           C NQKLNLI+NGFH YS  A F HL  KAAK+ RN KPNSVIC DCDG  +         
Sbjct: 26  CSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNTKPNSVICGDCDGNGAVVCSQCKGK 85

Query: 84  GVDAVDFFNGQFIAGASCWLCGGNK 98
           GV+AVDFFNGQF AG SCWLCGG K
Sbjct: 86  GVNAVDFFNGQFKAGESCWLCGGRK 110

[Close]

BLAST of Csor.00g075230 vs. ExPASy TrEMBL
Match: A0A5D3E725 (Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007410 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.83e-26
Identity = 55/83 (66.27%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 24  CGNQKLNLINNGFH-YSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGIDS--------- 83
           C NQKLNLI+NGFH YS  A F HL  KAAK+ RN KPNSVIC DCDG  +         
Sbjct: 25  CSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNTKPNSVICGDCDGNGAVLCSQCKGN 84

Query: 84  GVDAVDFFNGQFIAGASCWLCGG 96
           GV+AVDFFNGQF AG SCWLCGG
Sbjct: 85  GVNAVDFFNGQFKAGKSCWLCGG 107

[Close]

BLAST of Csor.00g075230 vs. ExPASy TrEMBL
Match: A0A5A7TB44 (Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold92G003640 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.83e-26
Identity = 55/85 (64.71%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 24  CGNQKLNLINNGFH-YSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGIDS--------- 83
           C NQKLNLI+N FH YS  A F HL  KAAK+ RN KPNSVIC DCDG  +         
Sbjct: 25  CSNQKLNLIHNAFHDYSSPARFPHLILKAAKNDRNTKPNSVICGDCDGNGAVLCSQCKGN 84

Query: 84  GVDAVDFFNGQFIAGASCWLCGGNK 98
           GV+AVDFFNGQF AG SCWLCGG K
Sbjct: 85  GVNAVDFFNGQFKAGKSCWLCGGRK 109

[Close]

BLAST of Csor.00g075230 vs. ExPASy TrEMBL
Match: A0A1S3CSH4 (chaperone protein DnaJ-like OS=Cucumis melo OX=3656 GN=LOC103503827 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.83e-26
Identity = 55/83 (66.27%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 24  CGNQKLNLINNGFH-YSPVAGFLHLNSKAAKSGRNIKPNSVICDDCDGIDS--------- 83
           C NQKLNLI+NGFH YS  A F HL  KAAK+ RN KPNSVIC DCDG  +         
Sbjct: 25  CSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRNTKPNSVICGDCDGNGAVLCSQCKGN 84

Query: 84  GVDAVDFFNGQFIAGASCWLCGG 96
           GV+AVDFFNGQF AG SCWLCGG
Sbjct: 85  GVNAVDFFNGQFKAGKSCWLCGG 107

[Close]

BLAST of Csor.00g075230 vs. TAIR 10
Match: AT3G47650.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.2e-07
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 50  KAAKSG-RNIKPNSVICDDCDG---------IDSGVDAVDFFNGQFIAGASCWLCGGNK 99
           KAA +  +  KPNS++C +C+G            GV+ +D FNGQF AGA CWLC G K
Sbjct: 56  KAANNNPQGTKPNSLVCANCEGEGCVACSQCKGGGVNLIDHFNGQFKAGALCWLCRGKK 114

The following BLAST results are available for this feature:

BLAST of Csor.00g075230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SN73	1.6e-06	45.76	Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9XF14	2.4e-05	38.33	Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic OS=Zea mays OX=4577 GN=BSD2 PE=...	[more]

BLAST of Csor.00g075230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608150.1	3.43e-72	100.00	Protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic, partial [Cucurbita argyrosperm...	[more]
XP_022148277.1	5.74e-30	62.50	uncharacterized protein LOC111016947 [Momordica charantia]	[more]
XP_038899028.1	2.84e-28	66.28	protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic-like [Benincasa hispida]	[more]
XP_004136477.1	4.78e-27	65.88	protein BUNDLE SHEATH DEFECTIVE 2, chloroplastic isoform X2 [Cucumis sativus] >K...	[more]
XP_008466412.1	3.78e-26	66.27	PREDICTED: chaperone protein DnaJ-like [Cucumis melo] >TYK31430.1 chaperone prot...	[more]

BLAST of Csor.00g075230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4M9	2.78e-30	62.50	uncharacterized protein LOC111016947 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A0A0LDP8	2.32e-27	65.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G878740 PE=4 SV=1	[more]
A0A5D3E725	1.83e-26	66.27	Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TB44	1.83e-26	64.71	Chaperone protein DnaJ-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3CSH4	1.83e-26	66.27	chaperone protein DnaJ-like OS=Cucumis melo OX=3656 GN=LOC103503827 PE=4 SV=1	[more]

BLAST of Csor.00g075230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47650.1	1.2e-07	45.76	DnaJ/Hsp40 cysteine-rich domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 26..98
None	No IPR available	PANTHER	PTHR15852:SF51	PROTEIN BUNDLE SHEATH DEFECTIVE 2, CHLOROPLASTIC	coord: 26..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g075230.m01	Csor.00g075230.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061077	chaperone-mediated protein folding
cellular_component	GO:0101031	chaperone complex
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0044183	protein folding chaperone