Csor.00g074520 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g074520
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionauxin-responsive protein SAUR32-like
LocationCsor_Chr01: 12309494 .. 12309751 (-)
RNA-Seq ExpressionCsor.00g074520
SyntenyCsor.00g074520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAACGAAGTCCAACAAAATCAGAGACATCGTTAGGCTTCAACAGATCCTGAAGAAGTGGCAGGACGTTGGCGAAACTCATCAAAGACGGGGGGGCTATAGATACTCCGGCACGGCGGCGGGATCTGGCCGAAAAGAGCATGAAGTTTCTGAAGCGGAACGCTCTCAGCCGGATGCGATGTTTCCGGCGCGTCCGTACCGAAAAGGAATCTTTGCCGGTGAGCGGTCGGTGAGGAGCAAAAGCGATTTGTGA

mRNA sequence

ATGGATTCAACGAAGTCCAACAAAATCAGAGACATCGTTAGGCTTCAACAGATCCTGAAGAAGTGGCAGGACGTTGGCGAAACTCATCAAAGACGGGGGGGCTATAGATACTCCGGCACGGCGGCGGGATCTGGCCGAAAAGAGCATGAAGTTTCTGAAGCGGAACGCTCTCAGCCGGATGCGATGTTTCCGGCGCGTCCGTACCGAAAAGGAATCTTTGCCGGTGAGCGGTCGGTGAGGAGCAAAAGCGATTTGTGA

Coding sequence (CDS)

ATGGATTCAACGAAGTCCAACAAAATCAGAGACATCGTTAGGCTTCAACAGATCCTGAAGAAGTGGCAGGACGTTGGCGAAACTCATCAAAGACGGGGGGGCTATAGATACTCCGGCACGGCGGCGGGATCTGGCCGAAAAGAGCATGAAGTTTCTGAAGCGGAACGCTCTCAGCCGGATGCGATGTTTCCGGCGCGTCCGTACCGAAAAGGAATCTTTGCCGGTGAGCGGTCGGTGAGGAGCAAAAGCGATTTGTGA

Protein sequence

MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRKEHEVSEAERSQPDAMFPARPYRKGIFAGERSVRSKSDL
Homology
BLAST of Csor.00g074520 vs. NCBI nr
Match: KAG6608220.1 (hypothetical protein SDJN03_01562, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171 bits (433), Expect = 1.35e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRKEHEVSEAERSQPD 60
          MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRKEHEVSEAERSQPD
Sbjct: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRKEHEVSEAERSQPD 60

Query: 61 AMFPARPYRKGIFAGERSVRSKSDL 85
          AMFPARPYRKGIFAGERSVRSKSDL
Sbjct: 61 AMFPARPYRKGIFAGERSVRSKSDL 85

BLAST of Csor.00g074520 vs. NCBI nr
Match: XP_022941145.1 (auxin-responsive protein SAUR32-like [Cucurbita moschata] >KAG6608228.1 Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 8.31e-08
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRK 47
          MDS KSNKIRDIVRLQQILKKW+ +  + +     RYSGTAAGSG K
Sbjct: 1  MDSKKSNKIRDIVRLQQILKKWRKLANSSKTAN--RYSGTAAGSGGK 45

BLAST of Csor.00g074520 vs. NCBI nr
Match: XP_023524404.1 (auxin-responsive protein SAUR32-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 8.31e-08
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRK 47
          MDS KSNKIRDIVRLQQILKKW+ +  + +     RYSGTAAGSG K
Sbjct: 1  MDSKKSNKIRDIVRLQQILKKWRKLANSSKTAN--RYSGTAAGSGGK 45

BLAST of Csor.00g074520 vs. NCBI nr
Match: KAG7037580.1 (Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 1.17e-07
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRK 47
          MDS KSNKIRDIVRLQQILKKW+ +  + +     RYSGTAAGSG K
Sbjct: 1  MDSKKSNKIRDIVRLQQILKKWRKLANSTKTAN--RYSGTAAGSGGK 45

BLAST of Csor.00g074520 vs. NCBI nr
Match: XP_022981908.1 (auxin-responsive protein SAUR32-like [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 3.23e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRK 47
          MDS KSNKIRDIVRLQQILKKW+ +  + +     RYSGTA GSG K
Sbjct: 1  MDSKKSNKIRDIVRLQQILKKWRKLANSSKTAN--RYSGTAVGSGGK 45

BLAST of Csor.00g074520 vs. ExPASy TrEMBL
Match: A0A6J1FSQ6 (auxin-responsive protein SAUR32-like OS=Cucurbita moschata OX=3662 GN=LOC111446531 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.03e-08
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRK 47
          MDS KSNKIRDIVRLQQILKKW+ +  + +     RYSGTAAGSG K
Sbjct: 1  MDSKKSNKIRDIVRLQQILKKWRKLANSSKTAN--RYSGTAAGSGGK 45

BLAST of Csor.00g074520 vs. ExPASy TrEMBL
Match: A0A6J1J3D2 (auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111480907 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.56e-07
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRK 47
          MDS KSNKIRDIVRLQQILKKW+ +  + +     RYSGTA GSG K
Sbjct: 1  MDSKKSNKIRDIVRLQQILKKWRKLANSSKTAN--RYSGTAVGSGGK 45

BLAST of Csor.00g074520 vs. ExPASy TrEMBL
Match: A0A6J1IEM6 (auxin-responsive protein SAUR72-like OS=Cucurbita maxima OX=3661 GN=LOC111476547 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.36e-04
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 2  DSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRK 47
          +S KSNKIRDIVRL QILKKW+ + ++ +     + SGTAAGSG K
Sbjct: 4  NSKKSNKIRDIVRLHQILKKWRKLADSSKTAN--KVSGTAAGSGGK 47

BLAST of Csor.00g074520 vs. ExPASy TrEMBL
Match: A0A6J1F9Z3 (auxin-responsive protein SAUR71-like OS=Cucurbita moschata OX=3662 GN=LOC111443447 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.90e-04
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 2  DSTKSNKIRDIVRLQQILKKWQDVGETHQRRGGYRYSGTAAGSGRK 47
          +S KSNKIRDIVRL QILKKW+ + ++ +     + SGTAAGSG K
Sbjct: 4  NSKKSNKIRDIVRLHQILKKWRKLADSSKTAN--KASGTAAGSGGK 47

BLAST of Csor.00g074520 vs. ExPASy TrEMBL
Match: A0A314YAQ0 (Auxin-responsive protein SAUR72-like OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31214 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.32e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGET 28
          MDS KSNKIRDIVRLQQILKKW+++  +
Sbjct: 5  MDSKKSNKIRDIVRLQQILKKWRNIANS 32

BLAST of Csor.00g074520 vs. TAIR 10
Match: AT4G31320.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 41.2 bits (95), Expect = 4.9e-04
Identity = 18/31 (58.06%), Postives = 25/31 (80.65%), Query Frame = 0

Query: 1  MDSTKSNKIRDIVRLQQILKKWQDVGETHQR 32
          M++ KSNKIR+IV+LQQILKKW+ V    ++
Sbjct: 1  MEAKKSNKIREIVKLQQILKKWRKVAHASKQ 31

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6608220.11.35e-53100.00hypothetical protein SDJN03_01562, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022941145.18.31e-0868.09auxin-responsive protein SAUR32-like [Cucurbita moschata] >KAG6608228.1 Auxin-re... [more]
XP_023524404.18.31e-0868.09auxin-responsive protein SAUR32-like [Cucurbita pepo subsp. pepo][more]
KAG7037580.11.17e-0768.09Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022981908.13.23e-0765.96auxin-responsive protein SAUR32-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1FSQ64.03e-0868.09auxin-responsive protein SAUR32-like OS=Cucurbita moschata OX=3662 GN=LOC1114465... [more]
A0A6J1J3D21.56e-0765.96auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111480907... [more]
A0A6J1IEM61.36e-0458.70auxin-responsive protein SAUR72-like OS=Cucurbita maxima OX=3661 GN=LOC111476547... [more]
A0A6J1F9Z31.90e-0458.70auxin-responsive protein SAUR71-like OS=Cucurbita moschata OX=3662 GN=LOC1114434... [more]
A0A314YAQ02.32e-0475.00Auxin-responsive protein SAUR72-like OS=Prunus yedoensis var. nudiflora OX=20945... [more]
Match NameE-valueIdentityDescription
AT4G31320.14.9e-0458.06SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g074520.m01Csor.00g074520.m01mRNA