Csor.00g072680 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g072680
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr02: 3561326 .. 3561666 (+)
RNA-Seq ExpressionCsor.00g072680
SyntenyCsor.00g072680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCGGGCGCATCAACCCTCCTTCTGCAACTCGCCCTCCTCTTTCTTTTCATTCTCCTCGTCACAATTCCAAGTAACGAATGTTAAGAATATTTAGCTTTGAATTACAGTTTACCACAGCTACCATATTTGCCTACTGCAACTAACATTTCTTTCTTTAAAACTTTGTTATGCATGGTATTATAGGGTCTCTGGGTGCACGGGGTTTGCTTGAAAAGACGGGGCATGGCGAGGAAGATCAGCTTGTCATAAGCCATGGAGGAGCATTGGAAAACGCCGATGGCTTCCTGGCGATGGATTATACTCCATCCAAGGCAAACCGTCCAGTCCATAATTAG

mRNA sequence

ATGGTCTCGGGCGCATCAACCCTCCTTCTGCAACTCGCCCTCCTCTTTCTTTTCATTCTCCTCGTCACAATTCCAAGGTCTCTGGGTGCACGGGGTTTGCTTGAAAAGACGGGGCATGGCGAGGAAGATCAGCTTGTCATAAGCCATGGAGGAGCATTGGAAAACGCCGATGGCTTCCTGGCGATGGATTATACTCCATCCAAGGCAAACCGTCCAGTCCATAATTAG

Coding sequence (CDS)

ATGGTCTCGGGCGCATCAACCCTCCTTCTGCAACTCGCCCTCCTCTTTCTTTTCATTCTCCTCGTCACAATTCCAAGGTCTCTGGGTGCACGGGGTTTGCTTGAAAAGACGGGGCATGGCGAGGAAGATCAGCTTGTCATAAGCCATGGAGGAGCATTGGAAAACGCCGATGGCTTCCTGGCGATGGATTATACTCCATCCAAGGCAAACCGTCCAGTCCATAATTAG

Protein sequence

MVSGASTLLLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFLAMDYTPSKANRPVHN
Homology
BLAST of Csor.00g072680 vs. NCBI nr
Match: KAG6605283.1 (hypothetical protein SDJN03_02600, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144 bits (362), Expect = 4.53e-43
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 1  MVSGASTLLLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFL 60
          MVSGASTLLLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFL
Sbjct: 1  MVSGASTLLLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFL 60

Query: 61 AMDYTPSKANRPVHN 75
          AMDYTPSKANRPVHN
Sbjct: 61 AMDYTPSKANRPVHN 75

BLAST of Csor.00g072680 vs. NCBI nr
Match: KAG6605285.1 (hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 6.51e-19
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 12 LALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFLAMDYTPSKANR 71
          L+LLFLFILL+T   SLG R LLEKTGH EED L I  GG LENA+  + MDYTP+  NR
Sbjct: 17 LSLLFLFILLITTTGSLGGRTLLEKTGHSEEDPLDIVRGGGLENANDLVTMDYTPATKNR 76

Query: 72 PVHN 75
          P+HN
Sbjct: 77 PIHN 80

BLAST of Csor.00g072680 vs. NCBI nr
Match: KAG6605284.1 (hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 4.18e-18
Identity = 53/81 (65.43%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 1  MVSGASTL-----LLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLV-ISHGGALE 60
          MV  ASTL     L  L LLFLFILLVT P S GA  LLEKT H EEDQL  ISHGGALE
Sbjct: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSEEDQLATISHGGALE 60

Query: 61 NADGFLAMDYTPSKANRPVHN 75
          NA    AMDYTP+  + PVHN
Sbjct: 61 NAYDLGAMDYTPAGPSPPVHN 81

BLAST of Csor.00g072680 vs. NCBI nr
Match: KAG6571378.1 (hypothetical protein SDJN03_30293, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 1.10e-07
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 16 FLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFLAMDYTPSKANRPVHN 75
          FLF LLVT   S G R L+E T   EE+ LV +H G L N    + M YT +K+NRPVHN
Sbjct: 21 FLFFLLVTATGSSGGRRLIEGTSRTEENPLVENHDGVLGND--LVTMHYTSAKSNRPVHN 78

BLAST of Csor.00g072680 vs. NCBI nr
Match: KGN62099.1 (hypothetical protein Csa_006414 [Cucumis sativus])

HSP 1 Score: 50.4 bits (119), Expect = 5.09e-06
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 0

Query: 4  GASTLLLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFLAMD 63
            + LL  LA +FLF LL+T   S  AR L+E     ++D  V +H G + N    + MD
Sbjct: 10 SCNNLLQLLAFIFLFFLLITTTGS-SARSLVEGRSRNDDDPYVKNHSGVIGND--LVTMD 69

Query: 64 YTPSKANRPVHN 75
          YTP++ N P+HN
Sbjct: 70 YTPARKNHPIHN 78

BLAST of Csor.00g072680 vs. ExPASy TrEMBL
Match: A0A0A0LM46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.47e-06
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 0

Query: 4  GASTLLLQLALLFLFILLVTIPRSLGARGLLEKTGHGEEDQLVISHGGALENADGFLAMD 63
            + LL  LA +FLF LL+T   S  AR L+E     ++D  V +H G + N    + MD
Sbjct: 10 SCNNLLQLLAFIFLFFLLITTTGS-SARSLVEGRSRNDDDPYVKNHSGVIGND--LVTMD 69

Query: 64 YTPSKANRPVHN 75
          YTP++ N P+HN
Sbjct: 70 YTPARKNHPIHN 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605283.14.53e-43100.00hypothetical protein SDJN03_02600, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605285.16.51e-1965.63hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605284.14.18e-1865.43hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571378.11.10e-0751.67hypothetical protein SDJN03_30293, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN62099.15.09e-0640.28hypothetical protein Csa_006414 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0LM462.47e-0640.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g072680.m01Csor.00g072680.m01mRNA