Csor.00g072580 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g072580
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr02: 3434944 .. 3435282 (-)
RNA-Seq Expression	Csor.00g072580
Synteny	Csor.00g072580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCCATTTCCCTATCCTTCTACTCGCCATCTTCCTAGCCATTGCAACTCACCAAATCCAGGGAAGGCCTTTCAAACCTCAAATGCCTCTCCACTCCTCTCCGAGCGTCGTCGGTTTCGGCCAGTCTGATACCGGTAGCAAAGACGATTTTCGCCCGACAATGCCTGGAAACAGCCCTGGAGTTGGCCATCATTCAGTCAAGAAAAGCGGCAGCGGCGGAGGCGGTGGCGGTGCCCAATCGGAGAACAATATGGAAGGGGTGAAGGATGATGATTCAAGGACCGCCGGCAGCCGCCATGCTATCCACCGCATTGCTTCAAAACCAAATGCTTAG

mRNA sequence

ATGGCAACCCATTTCCCTATCCTTCTACTCGCCATCTTCCTAGCCATTGCAACTCACCAAATCCAGGGAAGGCCTTTCAAACCTCAAATGCCTCTCCACTCCTCTCCGAGCGTCGTCGGTTTCGGCCAGTCTGATACCGGTAGCAAAGACGATTTTCGCCCGACAATGCCTGGAAACAGCCCTGGAGTTGGCCATCATTCAGTCAAGAAAAGCGGCAGCGGCGGAGGCGGTGGCGGTGCCCAATCGGAGAACAATATGGAAGGGGTGAAGGATGATGATTCAAGGACCGCCGGCAGCCGCCATGCTATCCACCGCATTGCTTCAAAACCAAATGCTTAG

Coding sequence (CDS)

ATGGCAACCCATTTCCCTATCCTTCTACTCGCCATCTTCCTAGCCATTGCAACTCACCAAATCCAGGGAAGGCCTTTCAAACCTCAAATGCCTCTCCACTCCTCTCCGAGCGTCGTCGGTTTCGGCCAGTCTGATACCGGTAGCAAAGACGATTTTCGCCCGACAATGCCTGGAAACAGCCCTGGAGTTGGCCATCATTCAGTCAAGAAAAGCGGCAGCGGCGGAGGCGGTGGCGGTGCCCAATCGGAGAACAATATGGAAGGGGTGAAGGATGATGATTCAAGGACCGCCGGCAGCCGCCATGCTATCCACCGCATTGCTTCAAAACCAAATGCTTAG

Protein sequence

MATHFPILLLAIFLAIATHQIQGRPFKPQMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPGVGHHSVKKSGSGGGGGGAQSENNMEGVKDDDSRTAGSRHAIHRIASKPNA

Homology

[Close]

BLAST of Csor.00g072580 vs. NCBI nr
Match: KAG6605273.1 (hypothetical protein SDJN03_02590, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035232.1 hypothetical protein SDJN02_02027, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221 bits (562), Expect = 2.00e-72
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MATHFPILLLAIFLAIATHQIQGRPFKPQMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNS 60
           MATHFPILLLAIFLAIATHQIQGRPFKPQMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNS
Sbjct: 1   MATHFPILLLAIFLAIATHQIQGRPFKPQMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNS 60

Query: 61  PGVGHHSVKKSGSGGGGGGAQSENNMEGVKDDDSRTAGSRHAIHRIASKPNA 112
           PGVGHHSVKKSGSGGGGGGAQSENNMEGVKDDDSRTAGSRHAIHRIASKPNA
Sbjct: 61  PGVGHHSVKKSGSGGGGGGAQSENNMEGVKDDDSRTAGSRHAIHRIASKPNA 112

[Close]

BLAST of Csor.00g072580 vs. NCBI nr
Match: XP_008457955.1 (PREDICTED: uncharacterized protein LOC103497520 [Cucumis melo] >KAA0045832.1 uncharacterized protein E6C27_scaffold243G003610 [Cucumis melo var. makuwa] >TYJ99451.1 uncharacterized protein E5676_scaffold123G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 1.05e-24
Identity = 65/116 (56.03%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 7   ILLLAIFLAIATHQIQGRPFKPQ----MPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPG 66
           ILLL IF+A  T+QIQGRP KP     +P HSS    GF +S+ GSKDDFRPT PGNSPG
Sbjct: 14  ILLLTIFIAFGTYQIQGRPLKPHTSSHIPSHSSLGD-GFRESNVGSKDDFRPTTPGNSPG 73

Query: 67  VGHHSVKKSGSGGG-GGGAQSENNMEGVKDDDSRTA-----GSRHAIHRIASKPNA 112
           VGHHSV++SG+        Q  +N EG+KDD   TA     G  H +H IASKPNA
Sbjct: 74  VGHHSVQRSGTMAAIASNNQLVHNTEGLKDDFRPTAPGHSPGIGHVLHGIASKPNA 128

[Close]

BLAST of Csor.00g072580 vs. NCBI nr
Match: XP_011650158.1 (precursor of CEP9 [Cucumis sativus])

HSP 1 Score: 100 bits (249), Expect = 1.48e-24
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 7   ILLLAIFLAIATHQIQGRPFKP----QMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPG 66
           ILLL IF+A  T+QIQGRPFKP     +P HSS    GF +SD GSKDDFRPT PGNSPG
Sbjct: 14  ILLLTIFIAFGTYQIQGRPFKPLTSSHIPSHSSLGD-GFRESDVGSKDDFRPTTPGNSPG 73

Query: 67  VGHHSVKKSGSGGG-GGGAQSENNMEGVKDDDSRTA-----GSRHAIHRIASKPNA 112
           VGHHS+++SG+        ++ +  EG+KDD   TA     G  H  H IASKPNA
Sbjct: 74  VGHHSIRRSGTMAAIASDGRAVHITEGLKDDFRPTAPGHSPGIGHVQHHIASKPNA 128

[Close]

BLAST of Csor.00g072580 vs. NCBI nr
Match: KAE8651918.1 (hypothetical protein Csa_006213 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 2.75e-22
Identity = 59/110 (53.64%), Postives = 71/110 (64.55%), Query Frame = 0


Query: 13  FLAIATHQIQGRPFKP----QMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPGVGHHSV 72
           +LA  T+QIQGRPFKP     +P HSS    GF +SD GSKDDFRPT PGNSPGVGHHS+
Sbjct: 7   YLAFGTYQIQGRPFKPLTSSHIPSHSSLGD-GFRESDVGSKDDFRPTTPGNSPGVGHHSI 66

Query: 73  KKSGSGGG-GGGAQSENNMEGVKDDDSRTA-----GSRHAIHRIASKPNA 112
           ++SG+        ++ +  EG+KDD   TA     G  H  H IASKPNA
Sbjct: 67  RRSGTMAAIASDGRAVHITEGLKDDFRPTAPGHSPGIGHVQHHIASKPNA 115

[Close]

BLAST of Csor.00g072580 vs. NCBI nr
Match: KAG6571310.1 (Precursor of CEP6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 4.87e-20
Identity = 58/114 (50.88%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 3   THFPILLLAIFLAIATHQIQGRPFKPQMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPG 62
           TH  +LLL IF+AI THQIQGRP KP       P+ V F +SD G KDDF P   GNSPG
Sbjct: 9   THCLLLLLTIFIAIGTHQIQGRPLKP-------PTGVSFRESDLGCKDDFNPETLGNSPG 68

Query: 63  VGHHSVKKSGSGGGGGGAQSENNMEGVKDDDSRTA-----GSRHAIHRIASKPN 111
           VGHHSV++ G    G   +S +  EG+K+D   T      G  HA  R ASKPN
Sbjct: 69  VGHHSVRRCGMADVG---RSVHYTEGLKNDFRPTVPGHSPGIGHAYPRTASKPN 112

[Close]

BLAST of Csor.00g072580 vs. ExPASy TrEMBL
Match: A0A5A7TR16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00110 PE=3 SV=1)

HSP 1 Score: 100 bits (250), Expect = 5.07e-25
Identity = 65/116 (56.03%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 7   ILLLAIFLAIATHQIQGRPFKPQ----MPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPG 66
           ILLL IF+A  T+QIQGRP KP     +P HSS    GF +S+ GSKDDFRPT PGNSPG
Sbjct: 14  ILLLTIFIAFGTYQIQGRPLKPHTSSHIPSHSSLGD-GFRESNVGSKDDFRPTTPGNSPG 73

Query: 67  VGHHSVKKSGSGGG-GGGAQSENNMEGVKDDDSRTA-----GSRHAIHRIASKPNA 112
           VGHHSV++SG+        Q  +N EG+KDD   TA     G  H +H IASKPNA
Sbjct: 74  VGHHSVQRSGTMAAIASNNQLVHNTEGLKDDFRPTAPGHSPGIGHVLHGIASKPNA 128

[Close]

BLAST of Csor.00g072580 vs. ExPASy TrEMBL
Match: A0A1S3C7Z6 (uncharacterized protein LOC103497520 OS=Cucumis melo OX=3656 GN=LOC103497520 PE=3 SV=1)

HSP 1 Score: 100 bits (250), Expect = 5.07e-25
Identity = 65/116 (56.03%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 7   ILLLAIFLAIATHQIQGRPFKPQ----MPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPG 66
           ILLL IF+A  T+QIQGRP KP     +P HSS    GF +S+ GSKDDFRPT PGNSPG
Sbjct: 14  ILLLTIFIAFGTYQIQGRPLKPHTSSHIPSHSSLGD-GFRESNVGSKDDFRPTTPGNSPG 73

Query: 67  VGHHSVKKSGSGGG-GGGAQSENNMEGVKDDDSRTA-----GSRHAIHRIASKPNA 112
           VGHHSV++SG+        Q  +N EG+KDD   TA     G  H +H IASKPNA
Sbjct: 74  VGHHSVQRSGTMAAIASNNQLVHNTEGLKDDFRPTAPGHSPGIGHVLHGIASKPNA 128

[Close]

BLAST of Csor.00g072580 vs. ExPASy TrEMBL
Match: A0A0A0LMN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285370 PE=3 SV=1)

HSP 1 Score: 100 bits (249), Expect = 7.18e-25
Identity = 64/116 (55.17%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 7   ILLLAIFLAIATHQIQGRPFKP----QMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPG 66
           ILLL IF+A  T+QIQGRPFKP     +P HSS    GF +SD GSKDDFRPT PGNSPG
Sbjct: 14  ILLLTIFIAFGTYQIQGRPFKPLTSSHIPSHSSLGD-GFRESDVGSKDDFRPTTPGNSPG 73

Query: 67  VGHHSVKKSGSGGG-GGGAQSENNMEGVKDDDSRTA-----GSRHAIHRIASKPNA 112
           VGHHS+++SG+        ++ +  EG+KDD   TA     G  H  H IASKPNA
Sbjct: 74  VGHHSIRRSGTMAAIASDGRAVHITEGLKDDFRPTAPGHSPGIGHVQHHIASKPNA 128

[Close]

BLAST of Csor.00g072580 vs. ExPASy TrEMBL
Match: A0A438KJP7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_001818 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.68e-06
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 28  PQMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPGVGHHSV 68
           P +P +S    VGFG S   SKDDFRPT PG+SPGVGHHSV
Sbjct: 85  PMLPNYS----VGFGDSTAVSKDDFRPTTPGSSPGVGHHSV 121

[Close]

BLAST of Csor.00g072580 vs. ExPASy TrEMBL
Match: A0A438F583 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_066883 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.79e-06
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 28  PQMPLHSSPSVVGFGQSDTGSKDDFRPTMPGNSPGVGHHSV 68
           P +P +S    VGFG S   SKDDFRPT PG+SPGVGHHSV
Sbjct: 125 PMLPNYS----VGFGDSTAVSKDDFRPTTPGSSPGVGHHSV 161

The following BLAST results are available for this feature:

BLAST of Csor.00g072580 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g072580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605273.1	2.00e-72	100.00	hypothetical protein SDJN03_02590, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008457955.1	1.05e-24	56.03	PREDICTED: uncharacterized protein LOC103497520 [Cucumis melo] >KAA0045832.1 unc...	[more]
XP_011650158.1	1.48e-24	55.17	precursor of CEP9 [Cucumis sativus]	[more]
KAE8651918.1	2.75e-22	53.64	hypothetical protein Csa_006213 [Cucumis sativus]	[more]
KAG6571310.1	4.87e-20	50.88	Precursor of CEP6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Csor.00g072580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR16	5.07e-25	56.03	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C7Z6	5.07e-25	56.03	uncharacterized protein LOC103497520 OS=Cucumis melo OX=3656 GN=LOC103497520 PE=...	[more]
A0A0A0LMN4	7.18e-25	55.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285370 PE=3 SV=1	[more]
A0A438KJP7	1.68e-06	65.85	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_001818 PE=3 SV=1	[more]
A0A438F583	2.79e-06	65.85	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_066883 PE=3 SV=1	[more]

BLAST of Csor.00g072580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g072580.m01	Csor.00g072580.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902025	nitrate import
biological_process	GO:1901371	regulation of leaf morphogenesis
biological_process	GO:2000280	regulation of root development
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005179	hormone activity