Csor.00g066610 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g066610
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RHOMBOID-like protein 12, mitochondrial
Location	Csor_Chr13: 10719564 .. 10722267 (+)
RNA-Seq Expression	Csor.00g066610
Synteny	Csor.00g066610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAATTCTTTTCTCGCAAACTTGCATCAAGGCTTTCGAATTCCTATGGGAATTCTCACTATTGCAGGGATTGCGCTTCTTTTGCCACACAAGTGCGAACCGGTAACCAAAACTACTTCTATGGCTCCTTCATCACTCGCCCGGTTAAGGATCACTCGCGTTCATGGAGTTCACATCGAAGTTTTACCGAGAAAATTCATGGGTTTTTCTCAGGCCCGGTGGTCGGAAAGCGATTCATATTGAATCCTTCAAACACCCTTTTCAAGGGGTCCATTAAGAGTCTAGTAGGAAGGTCTCTCTTTATGGGAAGCCCATTTTCGAAACTGAAATTTCAGTTGAAACCAGGTTTTGATCATCGATGGCCAGGCAGGTAATGCGTTTGCTCTGTTAGCAACTTCTTTTAATCGCTGAAGAATGTGAAGTCCTTTCATATACAAATGAATTCGTCGCTGAAGAGTGTGAAGTCCTTGTTCTTCATTCAGCGCTGAATATCCTAGTGTCCATAATTTCATTTTCGATGGTGAATTCGAATTTTCCCAATTGCATTGTCCTGTTAAAGTTTGCAAACCATTATGCAATACAATATATTGAATGTTTGCATGAGCCATTGGGAAATCTGATTAGTTCAAGAACAATTGTTATGCTGATTACTACTTGTTGGCATGAGGAGAGTGCGGAACTTCCAACTTCGTCAAATAAGTTCAAGCACTCCAATTTTTAGATGCCCCCCGTAGCATAGAGACTCTAACCTAGATTAGTGCTTGCTGTTTTGAAACTTCCTTCTTTGTTATTTTAGAATTAGCATTGTTCTTATCATGGGTTACTTAAGTTATTGTATAACATATCAAAATAACTTATTAGCCTTCTACATTTGAATAGGCTTGGTGGGTCTTTTAGTATTGAATACAATAAAACAGGTTATAATCATTTGAACAAAGGGGAGGATACTTCCTGATGAACATTGTTGATTATTTGGGGAAGTCCTTATTTTTGTTTTCTTATTCACAGGAGGGCATGGTTTCAAAGGCTGACGACTAATGATGTAGTGTTGGGGTTGATTATAGCTAATGTTGCTGTTTTCCTCCTCTGGCGGATTGCTGATCCTATCTTTATGTCAAAAAACTTTACTGTGAGTCCTTGATTGCAATTACATGCCTCAGAATTGTAGGCACCGATAGAATTATTTCTTCTCACCGATTTTGGTTAGGATCCATTTCTCTTGAATTGAGAGACTATTGATGTTCCATGGGAGCTCTTATGGGGCCATTCTTGAGGGAATCAACTATGTCCAGAAATCTAGATTATGAGTAATTGCATGTCTAGGAATCAAGATTAATCGTGTTTGTTTGGCATGATATATTCGTGAAAATTTTGTAATTATGGCTGAAAATATTATTACCTATGTTGCCAATCCAAGGGCACCAATTACCATCCCAAAAGTGATGGTTCAATCTCCCACCCAGCAATTATCGAACAGGAAAAAACTTAGATAACTATGTCTGTTTTGCTAGAATTGTCCATATAAGTGTAATAAAATATCAATTTGTTCTACTGATGCCTCTATAATTTGAAACTAGAGGATTTGGATTAATGATAGGATATCCATCCATTTCATCTCACTCATATCCAAATCACCCCTCCATCGGCATCTCAAACACCAAAGATACTTAGTAAACCACATTCATCGGAAGAGAAACATGGGATTCGACATATCCACCACATGGACGTTTAGAACTTCTCAAGATGAATGGCCCCTGAAAGTTGTTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCGTTATAAGAGTGTGGAAACCTCTTCTTAGCAGATGCGTTTTAAAACCTTGAGGGGAAGCTTGGAAGGAAACGCCCAAAGAGGATAATATTTCTAGCGGTGAGCTTAGGCTGTTACAAATGGTATTAGAGCTAGACACTGAGCGGTGTGCTAGCGAGGACGCTGAGCCCCGAAGGGGGTGGATTATGAGATCCCACATCAATTGGAGAGAGGAACGAGTGTCAGCGACGACGCTGGGTCTTGAAGGGAGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTCTTTATGAGGGTGTGGAAACTTCTCCCTAACATATGCGTTTTAAAAACTAAAACTTGAGGGGAAGCCTGGAAGGGAAAGTCCAAAGAGGACAATATCTGTTAGTGGTGGAGCTTGGGCCGTTGCACTTGTGATCAACTAACACCATTAGTAGTTTTTATTTATTTAATTATTTATATATATATATATATATTGTCAAATTGATTAACATGGTTTGAGAAATATTTGTGGCAATGTTACAACATTAGATGCCGTTTTGGAAGTTTTTTAATTTTAAAGCTTGGAACTTCAATTCAACTGTTCTCTGTTGGCAACATTATATTTTCAATATTTCAATTTTCTGTACACAGATCTCTGTAGAAAATGTTAGAAGCGGACGCATACATACATTGATTACATCAGCCTTCAGTCACGTAGAAATTGGCCATATAGTATCCAACATGATTGGACTATACTTCTTTGGGATGAACGTATGGCTATCTTTCTTCGAACTTCTACTAGGTCCTGATTTTATTTGTTTTATTTTCTCTGTTTATATGGGGGTGGCTTGTATAACTTTTTCTTTTGTTATGATCTTTACCGCTTTCCTCGTTTTGGCTTAG

mRNA sequence

ATGAACAAATTCTTTTCTCGCAAACTTGCATCAAGGCTTTCGAATTCCTATGGGAATTCTCACTATTGCAGGGATTGCGCTTCTTTTGCCACACAAGTGCGAACCGGTAACCAAAACTACTTCTATGGCTCCTTCATCACTCGCCCGGTTAAGGATCACTCGCGTTCATGGAGTTCACATCGAAGTTTTACCGAGAAAATTCATGGGTTTTTCTCAGGCCCGGTGGTCGGAAAGCGATTCATATTGAATCCTTCAAACACCCTTTTCAAGGGGTCCATTAAGAGTCTAGTAGGAAGGTCTCTCTTTATGGGAAGCCCATTTTCGAAACTGAAATTTCAGTTGAAACCAGGTTTTGATCATCGATGGCCAGGCAGGAGGGCATGGTTTCAAAGGCTGACGACTAATGATGTAGTGTTGGGGTTGATTATAGCTAATGTTGCTGTTTTCCTCCTCTGGCGGATTGCTGATCCTATCTTTATGTCAAAAAACTTTACTATCTCTGTAGAAAATGTTAGAAGCGGACGCATACATACATTGATTACATCAGCCTTCAGTCACGTAGAAATTGGCCATATAGTATCCAACATGATTGGACTATACTTCTTTGGGATGAACGTATGGCTATCTTTCTTCGAACTTCTACTAGGTCCTGATTTTATTTGTTTTATTTTCTCTGTTTATATGGGGGTGGCTTGTATAACTTTTTCTTTTGTTATGATCTTTACCGCTTTCCTCGTTTTGGCTTAG

Coding sequence (CDS)

ATGAACAAATTCTTTTCTCGCAAACTTGCATCAAGGCTTTCGAATTCCTATGGGAATTCTCACTATTGCAGGGATTGCGCTTCTTTTGCCACACAAGTGCGAACCGGTAACCAAAACTACTTCTATGGCTCCTTCATCACTCGCCCGGTTAAGGATCACTCGCGTTCATGGAGTTCACATCGAAGTTTTACCGAGAAAATTCATGGGTTTTTCTCAGGCCCGGTGGTCGGAAAGCGATTCATATTGAATCCTTCAAACACCCTTTTCAAGGGGTCCATTAAGAGTCTAGTAGGAAGGTCTCTCTTTATGGGAAGCCCATTTTCGAAACTGAAATTTCAGTTGAAACCAGGTTTTGATCATCGATGGCCAGGCAGGAGGGCATGGTTTCAAAGGCTGACGACTAATGATGTAGTGTTGGGGTTGATTATAGCTAATGTTGCTGTTTTCCTCCTCTGGCGGATTGCTGATCCTATCTTTATGTCAAAAAACTTTACTATCTCTGTAGAAAATGTTAGAAGCGGACGCATACATACATTGATTACATCAGCCTTCAGTCACGTAGAAATTGGCCATATAGTATCCAACATGATTGGACTATACTTCTTTGGGATGAACGTATGGCTATCTTTCTTCGAACTTCTACTAGGTCCTGATTTTATTTGTTTTATTTTCTCTGTTTATATGGGGGTGGCTTGTATAACTTTTTCTTTTGTTATGATCTTTACCGCTTTCCTCGTTTTGGCTTAG

Protein sequence

MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSHRSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDHRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLITSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIFSVYMGVACITFSFVMIFTAFLVLA

Homology

[Close]

BLAST of Csor.00g066610 vs. ExPASy Swiss-Prot
Match: Q9FZ81 (RHOMBOID-like protein 12, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBL12 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-29
Identity = 99/247 (40.08%), Postives = 134/247 (54.25%), Query Frame = 0


Query: 6   SRKLASRLSNSYGNSHYCRDCASF---ATQVRTGNQNYFYGSFITRPVK--DHSRSWSSH 65
           S +L   L+N   +SH  R   +      Q R    +Y   S  + PV   D S+ W S 
Sbjct: 14  SSRLTKLLANPTTHSHLNRQTFTSLYKPNQSRHFRTHYLPSSPSSPPVSRFDPSQLWRS- 73

Query: 66  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSK--LKFQLKPGF 125
               EKI GFF+  +  K   L          ++S VG   F+GS F K   +FQ   GF
Sbjct: 74  ----EKIRGFFASALGNKAVKLG-------NLVESRVG---FIGSQFPKKGFEFQRFSGF 133

Query: 126 DHRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHT 185
             R  G + W Q L+  DVVLGL+IAN  VF++WR+ +  FM  NF IS++N +SGR+HT
Sbjct: 134 QRR--GWKHWLQGLSDRDVVLGLVIANAGVFVMWRVFNQQFMMNNFMISLDNFKSGRLHT 193

Query: 186 LITSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIFSVYMGVACITFSFV 245
           LITSAFSH++IGHIVSNMIGLYFFG ++  +F     GP    F+  +Y+  A     F 
Sbjct: 194 LITSAFSHIDIGHIVSNMIGLYFFGTSIARNF-----GPQ---FLLKLYLAGALGGSVFY 235

[Close]

BLAST of Csor.00g066610 vs. ExPASy Swiss-Prot
Match: Q84WG3 (Rhomboid-like protein 16, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBL16 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-16
Identity = 61/167 (36.53%), Postives = 87/167 (52.10%), Query Frame = 0


Query: 62  SFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLK--PGFD 121
           S + ++HGFF+G +      L   N         +  R+ F  S      F+     GF 
Sbjct: 52  SRSARVHGFFAGKLGNTNLKLKFGNV--------MESRAGFFSSELPSHGFESGGFTGFQ 111

Query: 122 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRI--ADPIFMSKNFTISVENVRSGRIH 181
            R  G ++W      N VV GL+IAN AVF +WR+   D ++M KNF +S  +  +GRIH
Sbjct: 112 KR--GWKSWIN--GANGVVFGLVIANAAVFTMWRVLGKDNMWMVKNFMLSRYSFMTGRIH 171

Query: 182 TLITSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIF 225
           TLITS FSHV   HI+ NM+GL +FG  +  SF     GP ++  ++
Sbjct: 172 TLITSGFSHVGATHIILNMMGLCYFGARIARSF-----GPRYLLKLY 201

[Close]

BLAST of Csor.00g066610 vs. ExPASy Swiss-Prot
Match: B3H707 (Rhomboid-like protein 17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBL17 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-13
Identity = 51/147 (34.69%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 62  SFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLK--PGFD 121
           S + K+HGFF+  +      L   N         +  R+ F  S      F+     GF 
Sbjct: 58  SRSAKVHGFFASKLGNTNLKLKFGNV--------MESRAGFFSSELPSHGFESGGFTGFQ 117

Query: 122 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL 181
            R  G ++W      N VV GL+IAN AVF +WR++D     +++ +S  +  SG IHTL
Sbjct: 118 KR--GWKSWIN--GANGVVFGLVIANAAVFTMWRVSD-----RSWMLSTYSFTSGYIHTL 177

Query: 182 ITSAFSHVEIGHIVSNMIGLYFFGMNV 207
           ITS FSH+    I+ NMIG+ +FG  +
Sbjct: 178 ITSGFSHIGTSQIILNMIGISYFGSRI 187

[Close]

BLAST of Csor.00g066610 vs. NCBI nr
Match: KAG6584400.1 (RHOMBOID-like protein 12, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 496 bits (1277), Expect = 5.61e-177
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH
Sbjct: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120
           RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH
Sbjct: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120

Query: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180
           RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI
Sbjct: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180

Query: 181 TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIFSVYMGVACITFSFVMI 240
           TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIFSVYMGVACITFSFVMI
Sbjct: 181 TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIFSVYMGVACITFSFVMI 240

Query: 241 FTAFLVLA 248
           FTAFLVLA
Sbjct: 241 FTAFLVLA 248

[Close]

BLAST of Csor.00g066610 vs. NCBI nr
Match: KAG7019987.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 424 bits (1090), Expect = 3.95e-147
Identity = 209/220 (95.00%), Postives = 212/220 (96.36%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH
Sbjct: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120
           RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH
Sbjct: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120

Query: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180
           RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI
Sbjct: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180

Query: 181 TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFI 220
           TSAFSHVEIGHIVSNMIGLYFFGMN+   F     GP+F+
Sbjct: 181 TSAFSHVEIGHIVSNMIGLYFFGMNIGRVF-----GPEFL 215

[Close]

BLAST of Csor.00g066610 vs. NCBI nr
Match: XP_022923619.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita moschata])

HSP 1 Score: 419 bits (1076), Expect = 5.34e-145
Identity = 207/220 (94.09%), Postives = 210/220 (95.45%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNK FSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH
Sbjct: 1   MNKIFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120
           RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH
Sbjct: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120

Query: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180
           RW GRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI
Sbjct: 121 RWSGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180

Query: 181 TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFI 220
           TSAFSHVEIGHIVSNMIGLYFFGMN+   F     GP+F+
Sbjct: 181 TSAFSHVEIGHIVSNMIGLYFFGMNIGRVF-----GPEFL 215

[Close]

BLAST of Csor.00g066610 vs. NCBI nr
Match: XP_023519071.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 417 bits (1072), Expect = 2.17e-144
Identity = 206/220 (93.64%), Postives = 210/220 (95.45%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNKFFSRKLASRLSNSYGNSHYCRDCASF+TQV TGNQNYFYGSFITRPVKDHSRSWSSH
Sbjct: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFSTQVLTGNQNYFYGSFITRPVKDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120
           RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH
Sbjct: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120

Query: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180
           RW GRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI
Sbjct: 121 RWSGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180

Query: 181 TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFI 220
           TSAFSHVEIGHIVSNMIGLYFFGMN+   F     GP+F+
Sbjct: 181 TSAFSHVEIGHIVSNMIGLYFFGMNIGRVF-----GPEFL 215

[Close]

BLAST of Csor.00g066610 vs. NCBI nr
Match: XP_023001193.1 (RHOMBOID-like protein 12, mitochondrial [Cucurbita maxima])

HSP 1 Score: 414 bits (1063), Expect = 5.07e-143
Identity = 205/220 (93.18%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRT NQNYFYGSFITRPVKDHSRSWSSH
Sbjct: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTSNQNYFYGSFITRPVKDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120
           RS TEKIHGFFSGPVVGKRFILNPS+TLFKGSIKSLV RSLFMGSPFSKLKFQLKPGFDH
Sbjct: 61  RSCTEKIHGFFSGPVVGKRFILNPSSTLFKGSIKSLVERSLFMGSPFSKLKFQLKPGFDH 120

Query: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180
           RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI
Sbjct: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180

Query: 181 TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFI 220
           TSAFSHVEIGHIVSNMIGLYFFGMN+   F     GP+F+
Sbjct: 181 TSAFSHVEIGHIVSNMIGLYFFGMNIGRVF-----GPEFL 215

[Close]

BLAST of Csor.00g066610 vs. ExPASy TrEMBL
Match: A0A6J1E6X7 (RHOMBOID-like protein 12, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111431274 PE=3 SV=1)

HSP 1 Score: 419 bits (1076), Expect = 2.58e-145
Identity = 207/220 (94.09%), Postives = 210/220 (95.45%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNK FSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH
Sbjct: 1   MNKIFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120
           RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH
Sbjct: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120

Query: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180
           RW GRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI
Sbjct: 121 RWSGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180

Query: 181 TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFI 220
           TSAFSHVEIGHIVSNMIGLYFFGMN+   F     GP+F+
Sbjct: 181 TSAFSHVEIGHIVSNMIGLYFFGMNIGRVF-----GPEFL 215

[Close]

BLAST of Csor.00g066610 vs. ExPASy TrEMBL
Match: A0A6J1KPT4 (RHOMBOID-like protein 12, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495401 PE=3 SV=1)

HSP 1 Score: 414 bits (1063), Expect = 2.46e-143
Identity = 205/220 (93.18%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRT NQNYFYGSFITRPVKDHSRSWSSH
Sbjct: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTSNQNYFYGSFITRPVKDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLKPGFDH 120
           RS TEKIHGFFSGPVVGKRFILNPS+TLFKGSIKSLV RSLFMGSPFSKLKFQLKPGFDH
Sbjct: 61  RSCTEKIHGFFSGPVVGKRFILNPSSTLFKGSIKSLVERSLFMGSPFSKLKFQLKPGFDH 120

Query: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180
           RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI
Sbjct: 121 RWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTLI 180

Query: 181 TSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFI 220
           TSAFSHVEIGHIVSNMIGLYFFGMN+   F     GP+F+
Sbjct: 181 TSAFSHVEIGHIVSNMIGLYFFGMNIGRVF-----GPEFL 215

[Close]

BLAST of Csor.00g066610 vs. ExPASy TrEMBL
Match: A0A0A0LTI7 (Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE=3 SV=1)

HSP 1 Score: 351 bits (901), Expect = 1.08e-118
Identity = 169/207 (81.64%), Postives = 189/207 (91.30%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNK FSRKL SRLSNSY NS  C+DCASF+T VRT NQN+ +GSF+TRP++DHSRSWSSH
Sbjct: 1   MNKLFSRKLVSRLSNSYANSLDCKDCASFSTLVRTHNQNHLFGSFVTRPIQDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLV-GRSLFMGSPFSKLKFQLKPGFD 120
           RSF +KIHGFFS PVVGKRFI+NPSNT FKGS+KS+V  RSLF G+PFSKLKFQLKPGF 
Sbjct: 61  RSFAQKIHGFFSVPVVGKRFIVNPSNTYFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFV 120

Query: 121 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL 180
           H+W GRR+WFQRLT N+VVLGLIIANVAVFLLWRIADPIFMSKNFTIS+ENVRSGRIHTL
Sbjct: 121 HQWGGRRSWFQRLTPNEVVLGLIIANVAVFLLWRIADPIFMSKNFTISLENVRSGRIHTL 180

Query: 181 ITSAFSHVEIGHIVSNMIGLYFFGMNV 206
           ITSAFSH++ GHIVSNM+GLYFFGMN+
Sbjct: 181 ITSAFSHIDTGHIVSNMVGLYFFGMNI 207

[Close]

BLAST of Csor.00g066610 vs. ExPASy TrEMBL
Match: A0A5D3BLA0 (RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001490 PE=3 SV=1)

HSP 1 Score: 348 bits (894), Expect = 1.25e-117
Identity = 168/207 (81.16%), Postives = 188/207 (90.82%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNK FSRKLASRLSNSY NS YC+DCASF+T  RT NQN+ +GSF+TRP++DHSRSWSSH
Sbjct: 1   MNKLFSRKLASRLSNSYANSIYCKDCASFSTLGRTHNQNHLFGSFVTRPLQDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLV-GRSLFMGSPFSKLKFQLKPGFD 120
           RSF +KIHGFFS PVVGKR ++NPSNT FKGS+KS+V  RSLF G+PFSKLKFQLKPGF 
Sbjct: 61  RSFVQKIHGFFSVPVVGKRLMVNPSNTHFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFV 120

Query: 121 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL 180
           H+W GRR+WFQRLT  DVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL
Sbjct: 121 HQWGGRRSWFQRLTPKDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL 180

Query: 181 ITSAFSHVEIGHIVSNMIGLYFFGMNV 206
           ITSAFSH++ GH++SNMIGLYFFGMN+
Sbjct: 181 ITSAFSHIDTGHLISNMIGLYFFGMNI 207

[Close]

BLAST of Csor.00g066610 vs. ExPASy TrEMBL
Match: A0A1S3BSX2 (RHOMBOID-like protein 12, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493123 PE=3 SV=1)

HSP 1 Score: 348 bits (894), Expect = 1.25e-117
Identity = 168/207 (81.16%), Postives = 188/207 (90.82%), Query Frame = 0


Query: 1   MNKFFSRKLASRLSNSYGNSHYCRDCASFATQVRTGNQNYFYGSFITRPVKDHSRSWSSH 60
           MNK FSRKLASRLSNSY NS YC+DCASF+T  RT NQN+ +GSF+TRP++DHSRSWSSH
Sbjct: 1   MNKLFSRKLASRLSNSYANSIYCKDCASFSTLGRTHNQNHLFGSFVTRPLQDHSRSWSSH 60

Query: 61  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLV-GRSLFMGSPFSKLKFQLKPGFD 120
           RSF +KIHGFFS PVVGKR ++NPSNT FKGS+KS+V  RSLF G+PFSKLKFQLKPGF 
Sbjct: 61  RSFVQKIHGFFSVPVVGKRLMVNPSNTHFKGSMKSVVESRSLFTGTPFSKLKFQLKPGFV 120

Query: 121 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL 180
           H+W GRR+WFQRLT  DVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL
Sbjct: 121 HQWGGRRSWFQRLTPKDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL 180

Query: 181 ITSAFSHVEIGHIVSNMIGLYFFGMNV 206
           ITSAFSH++ GH++SNMIGLYFFGMN+
Sbjct: 181 ITSAFSHIDTGHLISNMIGLYFFGMNI 207

[Close]

BLAST of Csor.00g066610 vs. TAIR 10
Match: AT1G18600.1 (RHOMBOID-like protein 12 )

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-30
Identity = 99/247 (40.08%), Postives = 134/247 (54.25%), Query Frame = 0


Query: 6   SRKLASRLSNSYGNSHYCRDCASF---ATQVRTGNQNYFYGSFITRPVK--DHSRSWSSH 65
           S +L   L+N   +SH  R   +      Q R    +Y   S  + PV   D S+ W S 
Sbjct: 14  SSRLTKLLANPTTHSHLNRQTFTSLYKPNQSRHFRTHYLPSSPSSPPVSRFDPSQLWRS- 73

Query: 66  RSFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSK--LKFQLKPGF 125
               EKI GFF+  +  K   L          ++S VG   F+GS F K   +FQ   GF
Sbjct: 74  ----EKIRGFFASALGNKAVKLG-------NLVESRVG---FIGSQFPKKGFEFQRFSGF 133

Query: 126 DHRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHT 185
             R  G + W Q L+  DVVLGL+IAN  VF++WR+ +  FM  NF IS++N +SGR+HT
Sbjct: 134 QRR--GWKHWLQGLSDRDVVLGLVIANAGVFVMWRVFNQQFMMNNFMISLDNFKSGRLHT 193

Query: 186 LITSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIFSVYMGVACITFSFV 245
           LITSAFSH++IGHIVSNMIGLYFFG ++  +F     GP    F+  +Y+  A     F 
Sbjct: 194 LITSAFSHIDIGHIVSNMIGLYFFGTSIARNF-----GPQ---FLLKLYLAGALGGSVFY 235

[Close]

BLAST of Csor.00g066610 vs. TAIR 10
Match: AT1G74130.2 (Rhomboid-related intramembrane serine protease family protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17
Identity = 61/167 (36.53%), Postives = 87/167 (52.10%), Query Frame = 0


Query: 62  SFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLK--PGFD 121
           S + ++HGFF+G +      L   N         +  R+ F  S      F+     GF 
Sbjct: 52  SRSARVHGFFAGKLGNTNLKLKFGNV--------MESRAGFFSSELPSHGFESGGFTGFQ 111

Query: 122 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRI--ADPIFMSKNFTISVENVRSGRIH 181
            R  G ++W      N VV GL+IAN AVF +WR+   D ++M KNF +S  +  +GRIH
Sbjct: 112 KR--GWKSWIN--GANGVVFGLVIANAAVFTMWRVLGKDNMWMVKNFMLSRYSFMTGRIH 171

Query: 182 TLITSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIF 225
           TLITS FSHV   HI+ NM+GL +FG  +  SF     GP ++  ++
Sbjct: 172 TLITSGFSHVGATHIILNMMGLCYFGARIARSF-----GPRYLLKLY 201

[Close]

BLAST of Csor.00g066610 vs. TAIR 10
Match: AT1G74130.1 (Rhomboid-related intramembrane serine protease family protein )

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17
Identity = 61/167 (36.53%), Postives = 87/167 (52.10%), Query Frame = 0


Query: 62  SFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLK--PGFD 121
           S + ++HGFF+G +      L   N         +  R+ F  S      F+     GF 
Sbjct: 52  SRSARVHGFFAGKLGNTNLKLKFGNV--------MESRAGFFSSELPSHGFESGGFTGFQ 111

Query: 122 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRI--ADPIFMSKNFTISVENVRSGRIH 181
            R  G ++W      N VV GL+IAN AVF +WR+   D ++M KNF +S  +  +GRIH
Sbjct: 112 KR--GWKSWIN--GANGVVFGLVIANAAVFTMWRVLGKDNMWMVKNFMLSRYSFMTGRIH 171

Query: 182 TLITSAFSHVEIGHIVSNMIGLYFFGMNVWLSFFELLLGPDFICFIF 225
           TLITS FSHV   HI+ NM+GL +FG  +  SF     GP ++  ++
Sbjct: 172 TLITSGFSHVGATHIILNMMGLCYFGARIARSF-----GPRYLLKLY 201

[Close]

BLAST of Csor.00g066610 vs. TAIR 10
Match: AT1G74140.1 (Rhomboid-related intramembrane serine protease family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-14
Identity = 51/147 (34.69%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 62  SFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLK--PGFD 121
           S + K+HGFF+  +      L   N         +  R+ F  S      F+     GF 
Sbjct: 58  SRSAKVHGFFASKLGNTNLKLKFGNV--------MESRAGFFSSELPSHGFESGGFTGFQ 117

Query: 122 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL 181
            R  G ++W      N VV GL+IAN AVF +WR++D     +++ +S  +  SG IHTL
Sbjct: 118 KR--GWKSWIN--GANGVVFGLVIANAAVFTMWRVSD-----RSWMLSTYSFTSGYIHTL 177

Query: 182 ITSAFSHVEIGHIVSNMIGLYFFGMNV 207
           ITS FSH+    I+ NMIG+ +FG  +
Sbjct: 178 ITSGFSHIGTSQIILNMIGISYFGSRI 187

[Close]

BLAST of Csor.00g066610 vs. TAIR 10
Match: AT1G74140.4 (Rhomboid-related intramembrane serine protease family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-14
Identity = 51/147 (34.69%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 62  SFTEKIHGFFSGPVVGKRFILNPSNTLFKGSIKSLVGRSLFMGSPFSKLKFQLK--PGFD 121
           S + K+HGFF+  +      L   N         +  R+ F  S      F+     GF 
Sbjct: 58  SRSAKVHGFFASKLGNTNLKLKFGNV--------MESRAGFFSSELPSHGFESGGFTGFQ 117

Query: 122 HRWPGRRAWFQRLTTNDVVLGLIIANVAVFLLWRIADPIFMSKNFTISVENVRSGRIHTL 181
            R  G ++W      N VV GL+IAN AVF +WR++D     +++ +S  +  SG IHTL
Sbjct: 118 KR--GWKSWIN--GANGVVFGLVIANAAVFTMWRVSD-----RSWMLSTYSFTSGYIHTL 177

Query: 182 ITSAFSHVEIGHIVSNMIGLYFFGMNV 207
           ITS FSH+    I+ NMIG+ +FG  +
Sbjct: 178 ITSGFSHIGTSQIILNMIGISYFGSRI 187

The following BLAST results are available for this feature:

BLAST of Csor.00g066610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ81	1.9e-29	40.08	RHOMBOID-like protein 12, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBL12...	[more]
Q84WG3	1.9e-16	36.53	Rhomboid-like protein 16, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBL16...	[more]
B3H707	1.9e-13	34.69	Rhomboid-like protein 17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBL17...	[more]

BLAST of Csor.00g066610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584400.1	5.61e-177	100.00	RHOMBOID-like protein 12, mitochondrial, partial [Cucurbita argyrosperma subsp. ...	[more]
KAG7019987.1	3.95e-147	95.00	RHOMBOID-like protein 12, mitochondrial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022923619.1	5.34e-145	94.09	RHOMBOID-like protein 12, mitochondrial [Cucurbita moschata]	[more]
XP_023519071.1	2.17e-144	93.64	RHOMBOID-like protein 12, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_023001193.1	5.07e-143	93.18	RHOMBOID-like protein 12, mitochondrial [Cucurbita maxima]	[more]

BLAST of Csor.00g066610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6X7	2.58e-145	94.09	RHOMBOID-like protein 12, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KPT4	2.46e-143	93.18	RHOMBOID-like protein 12, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495...	[more]
A0A0A0LTI7	1.08e-118	81.64	Rhomboid domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039320 PE...	[more]
A0A5D3BLA0	1.25e-117	81.16	RHOMBOID-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BSX2	1.25e-117	81.16	RHOMBOID-like protein 12, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493123 ...	[more]

BLAST of Csor.00g066610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18600.1	1.4e-30	40.08	RHOMBOID-like protein 12	[more]
AT1G74130.2	1.3e-17	36.53	Rhomboid-related intramembrane serine protease family protein	[more]
AT1G74130.1	1.3e-17	36.53	Rhomboid-related intramembrane serine protease family protein	[more]
AT1G74140.1	1.4e-14	34.69	Rhomboid-related intramembrane serine protease family protein	[more]
AT1G74140.4	1.4e-14	34.69	Rhomboid-related intramembrane serine protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035952	Rhomboid-like superfamily	GENE3D	1.20.1540.10		coord: 131..246 e-value: 1.1E-14 score: 56.4
IPR035952	Rhomboid-like superfamily	SUPERFAMILY	144091	Rhomboid-like	coord: 134..210
IPR022764	Peptidase S54, rhomboid domain	PFAM	PF01694	Rhomboid	coord: 172..233 e-value: 3.7E-6 score: 27.0
None	No IPR available	PANTHER	PTHR43731	RHOMBOID PROTEASE	coord: 17..240
None	No IPR available	PANTHER	PTHR43731:SF22	RHOMBOID-LIKE PROTEIN 12, MITOCHONDRIAL	coord: 17..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g066610.m01	Csor.00g066610.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004252	serine-type endopeptidase activity