Csor.00g063650 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g063650
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr13: 9183239 .. 9185125 (-)
RNA-Seq ExpressionCsor.00g063650
SyntenyCsor.00g063650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCTTATTTTGTGGGCTCTCGCCTCATGGGCTTGAGTCATAGACTCTTGTTTGGTGGGTTCACTCCCCGTGGGCTTGAGTTCATGGACTCTTGTTTAGTGGGCTCTCTCCCCGTGGGCTTGAGCTCATGGACTTCTTTTTTGGGCTCTCGCCTCATGGGCTTAAGTTCATGGACTCTTGTTTGGTGGGCTCTGGCCTCATGGGCTTCTGTTCATGGACTCTTGTTTGGTGGGCTTCGTTTCATGGGCTTGAGTTCATGGACTCTCGCCTCGTAATTGATGAAGACCCAATTAAAAAATTAGTACTATTATTTAAATAAAATATTCTTACTCTATTTACAAATATACTAAAATTGTGATGTTATTGTGAACTCTTCATTAGGTAGGTTAGATAGAGATAACCGTAAGTAAAATTGTGATATTGTTGTCCATGAAAACAAGAGTTTGACACTAGTAGTGTGGGAGCGAGAACGCTAGGTTCCTGAGAGGTGGAGTGTGAGATTCAACATTTTTTAAAAAAATTGTAAGGTTGACGACCATATGTAACGGGCTACATATTTGTTAGCTATAAGTTTGGGCTGTTACGTATACATTTTTTTTCTTTTCTTTTTATCTTTAATTACTACATTGTATACTTGTATTTATTACCATATCGTCGTCTCAATACATATCAATATCCACAGTTTCAATGTCCACAACGAGGTAGTAGTCATTGTCTATCTCATTCGAAAATTTTGTGAGAACCCACATAACGTTCCTATATTTGAAAAGACTTATGATCAACAAGTTTAGATTTGAGTCAAATACGACCAAAGATTACTGATTTTTTTTATAAGAAATATAATTGTAGGCATATGCATCTTGTTCGTTTTTCATTTCAAAACTACTTGATGATATTAAAGAAGTTTCATTTCAAAACTTTGTGAGGTTATTAAAAATAGTTTTTGATTTTGTGAGCTCTAACGATTAATTAATCGATATTTTCACAATGCCTTGAATGTTATATATTGTTTTATAATTTTTTTTAAAAGACGCATTCTTAAGAGAGTTATTATGTTATTTTTAATTTATTATTGTTTCTAATTTTTCTTTTTTATTATTTCAACGACGTAGAATTTATATTGTTTATTGATTTTTTAATTATTTTATTATTGTGTTGTTTCGCAATGTATTTAGAGAAAGATTAAGGGACTTTCATTAGATTGTTCTAGAAGAGTCTTATTGGTCTTACACTCAAATGAATTAAACGATGATAAATTAGTGTGTATTTGTATTACTACTTGGAACATGTATTACTTTTTTATTTATTTATAAATTATAAATTATTATTTTTATTGAGGCGAATACCTTTAATTTCAAATTAATTAATTAGTTGATCAATGATAATTAATTCGATCTTTTGGATTGTCATATCCAGTCCAAATTAATTCTTAAATTCGAAAATTTAATAATTAAATCCTTAGTCGTTATAAAATCTTCGATTTTATTCTTTTATTAACTCATTATTCATGGCAGACGTGACAATATTTAATTGAAATAATACTCGTGATAATAATAATAATAATATCTCAAAAAGACAACAAAAAGGGTTTTTAAGTATTATATATTTGGATAAATGGCCAATGTGTTTATATATATTAGTTGTTCATCGCTCATAGATCTCATTGCCTTCTCTACCTCAACCTCTTCAGTTGTATTAGGTTTCCAATTCCAAGTAATAATATGATGCAGCAAACTCATGGGTCGTCTTCAAATTGCCTGAAAAGAATGGTTCTCAGTTCGGACGACCTCCATGGAATTGATGTGGGTGGTGACTTTTGCGAAGCTTCATCGTCGACGCTAAGTGAACGTGAAGGAGGATTAGCCTTTACCGATAATCGCTGA

mRNA sequence

ATGGACTCTTATTTTGTGGGCTCTCGCCTCATGGGCTTGAGTCATAGACTCTTGTTTGGTGGGTTCACTCCCCGTGGGCTTGAGTTCATGGACTCTTGTTTAGTGGGCTCTCTCCCCGTGGGCTTGAGCTCATGGACTTCTTTTTTGGGCTCTCGCCTCATGGGCTTAAGTTCATGGACTCTTGTTTGGTGGGCTCTGGCCTCATGGGCTTCTGTTCATGGACTCTTGTTTGGTGGGCTTCGTTTCATGGGCTTGAGTTCATGGACTCTCGCCTCGTTTCCAATTCCAAGTAATAATATGATGCAGCAAACTCATGGGTCGTCTTCAAATTGCCTGAAAAGAATGGTTCTCAGTTCGGACGACCTCCATGGAATTGATGTGGGTGGTGACTTTTGCGAAGCTTCATCGTCGACGCTAAGTGAACGTGAAGGAGGATTAGCCTTTACCGATAATCGCTGA

Coding sequence (CDS)

ATGGACTCTTATTTTGTGGGCTCTCGCCTCATGGGCTTGAGTCATAGACTCTTGTTTGGTGGGTTCACTCCCCGTGGGCTTGAGTTCATGGACTCTTGTTTAGTGGGCTCTCTCCCCGTGGGCTTGAGCTCATGGACTTCTTTTTTGGGCTCTCGCCTCATGGGCTTAAGTTCATGGACTCTTGTTTGGTGGGCTCTGGCCTCATGGGCTTCTGTTCATGGACTCTTGTTTGGTGGGCTTCGTTTCATGGGCTTGAGTTCATGGACTCTCGCCTCGTTTCCAATTCCAAGTAATAATATGATGCAGCAAACTCATGGGTCGTCTTCAAATTGCCTGAAAAGAATGGTTCTCAGTTCGGACGACCTCCATGGAATTGATGTGGGTGGTGACTTTTGCGAAGCTTCATCGTCGACGCTAAGTGAACGTGAAGGAGGATTAGCCTTTACCGATAATCGCTGA

Protein sequence

MDSYFVGSRLMGLSHRLLFGGFTPRGLEFMDSCLVGSLPVGLSSWTSFLGSRLMGLSSWTLVWWALASWASVHGLLFGGLRFMGLSSWTLASFPIPSNNMMQQTHGSSSNCLKRMVLSSDDLHGIDVGGDFCEASSSTLSEREGGLAFTDNR
Homology
[Close]
BLAST of Csor.00g063650 vs. NCBI nr
Match: KAG6584104.1 (hypothetical protein SDJN03_20036, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313 bits (803), Expect = 6.88e-108
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MDSYFVGSRLMGLSHRLLFGGFTPRGLEFMDSCLVGSLPVGLSSWTSFLGSRLMGLSSWT 60
           MDSYFVGSRLMGLSHRLLFGGFTPRGLEFMDSCLVGSLPVGLSSWTSFLGSRLMGLSSWT
Sbjct: 1   MDSYFVGSRLMGLSHRLLFGGFTPRGLEFMDSCLVGSLPVGLSSWTSFLGSRLMGLSSWT 60

Query: 61  LVWWALASWASVHGLLFGGLRFMGLSSWTLASFPIPSNNMMQQTHGSSSNCLKRMVLSSD 120
           LVWWALASWASVHGLLFGGLRFMGLSSWTLASFPIPSNNMMQQTHGSSSNCLKRMVLSSD
Sbjct: 61  LVWWALASWASVHGLLFGGLRFMGLSSWTLASFPIPSNNMMQQTHGSSSNCLKRMVLSSD 120

Query: 121 DLHGIDVGGDFCEASSSTLSEREGGLAFTDNR 152
           DLHGIDVGGDFCEASSSTLSEREGGLAFTDNR
Sbjct: 121 DLHGIDVGGDFCEASSSTLSEREGGLAFTDNR 152

[Close]
BLAST of Csor.00g063650 vs. NCBI nr
Match: XP_022923771.1 (uncharacterized protein LOC111431379 [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 4.23e-12
Identity = 37/46 (80.43%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 93  FPIPSNNMMQQTHGSSSNCLKRMVLSSDDLHGIDVGGDFCEASSST 138
           FPIPSNN   Q HGSSSNC K MVLSSDD HGIDV GDF EASSST
Sbjct: 3   FPIPSNNTTHQIHGSSSNCPKMMVLSSDDNHGIDVHGDFYEASSST 48

[Close]
BLAST of Csor.00g063650 vs. NCBI nr
Match: KAG6597347.1 (Multiple organellar RNA editing factor 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 51.2 bits (121), Expect = 3.50e-04
Identity = 31/70 (44.29%), Postives = 34/70 (48.57%), Query Frame = 0 

Query: 1   MDSYFVGSRLMGLSHRLLFGGFTPRGLEFMDSCLVGSLPVGLSSWTSFLGSRLMGLSSWT 60
           MD  FV SR     H LLF G +P GLE M+ C V S          F G   M L  WT
Sbjct: 264 MDPCFVDSRPWAWVHGLLFHGLSPHGLESMEPCFVDSRSWDWILGPLFRGLSFMSLDPWT 323

Query: 61  LVWWALASWA 70
           L   +LASWA
Sbjct: 324 LGSCSLASWA 333

[Close]
BLAST of Csor.00g063650 vs. ExPASy TrEMBL
Match: A0A6J1E7M8 (uncharacterized protein LOC111431379 OS=Cucurbita moschata OX=3662 GN=LOC111431379 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.05e-12
Identity = 37/46 (80.43%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 93  FPIPSNNMMQQTHGSSSNCLKRMVLSSDDLHGIDVGGDFCEASSST 138
           FPIPSNN   Q HGSSSNC K MVLSSDD HGIDV GDF EASSST
Sbjct: 3   FPIPSNNTTHQIHGSSSNCPKMMVLSSDDNHGIDVHGDFYEASSST 48

The following BLAST results are available for this feature:
BLAST of Csor.00g063650 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g063650 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6584104.16.88e-108100.00hypothetical protein SDJN03_20036, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022923771.14.23e-1280.43uncharacterized protein LOC111431379 [Cucurbita moschata][more]
KAG6597347.13.50e-0444.29Multiple organellar RNA editing factor 2, chloroplastic, partial [Cucurbita argy... [more]
BLAST of Csor.00g063650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E7M82.05e-1280.43uncharacterized protein LOC111431379 OS=Cucurbita moschata OX=3662 GN=LOC1114313... [more]
BLAST of Csor.00g063650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g063650.m01Csor.00g063650.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane