Csor.00g063330 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g063330
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	homeobox-leucine zipper protein MERISTEM L1-like
Location	Csor_Chr13: 9025940 .. 9026188 (+)
RNA-Seq Expression	Csor.00g063330
Synteny	Csor.00g063330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGAGGGCATGATTATGAAGAACATCATCATCACGAGGAGGACGTTGTTCTCCTGGAGATGACCCAGAAAACCTTCGAAACGGAGCTGGAGAAGTTTGGGGAAGAGGATCAGTTGGAGAGCAGCAGCAGATCGGTGAAGGACGCCGCCATGGGAGAGGACGACCCATTTCTTCACAATCACACTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTAA

mRNA sequence

ATGTTGGGAGGGCATGATTATGAAGAACATCATCATCACGAGGAGGACGTTGTTCTCCTGGAGATGACCCAGAAAACCTTCGAAACGGAGCTGGAGAAGTTTGGGGAAGAGGATCAGTTGGAGAGCAGCAGCAGATCGGTGAAGGACGCCGCCATGGGAGAGGACGACCCATTTCTTCACAATCACACTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTAA

Coding sequence (CDS)

ATGTTGGGAGGGCATGATTATGAAGAACATCATCATCACGAGGAGGACGTTGTTCTCCTGGAGATGACCCAGAAAACCTTCGAAACGGAGCTGGAGAAGTTTGGGGAAGAGGATCAGTTGGAGAGCAGCAGCAGATCGGTGAAGGACGCCGCCATGGGAGAGGACGACCCATTTCTTCACAATCACACTAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATCCAGGAAATGGAAGCGTAA

Protein sequence

MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLHNHTNKRKRYHRHTQLQIQEMEA

Homology

[Close]

BLAST of Csor.00g063330 vs. NCBI nr
Match: KAG6584072.1 (Homeobox-leucine zipper protein HDG2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164 bits (416), Expect = 4.27e-51
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH
Sbjct: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          NHTNKRKRYHRHTQLQIQEMEA
Sbjct: 61 NHTNKRKRYHRHTQLQIQEMEA 82

[Close]

BLAST of Csor.00g063330 vs. NCBI nr
Match: KAG7019674.1 (Homeobox-leucine zipper protein MERISTEM L1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164 bits (416), Expect = 1.62e-45
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH
Sbjct: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          NHTNKRKRYHRHTQLQIQEMEA
Sbjct: 61 NHTNKRKRYHRHTQLQIQEMEA 82

[Close]

BLAST of Csor.00g063330 vs. NCBI nr
Match: XP_022933178.1 (homeobox-leucine zipper protein MERISTEM L1-like [Cucurbita moschata])

HSP 1 Score: 163 bits (413), Expect = 7.52e-45
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGE+DQLESSSRSVKDAAMGEDDPFLH
Sbjct: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEDDQLESSSRSVKDAAMGEDDPFLH 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          NHTNKRKRYHRHTQLQIQEMEA
Sbjct: 61 NHTNKRKRYHRHTQLQIQEMEA 82

[Close]

BLAST of Csor.00g063330 vs. NCBI nr
Match: XP_023519981.1 (homeobox-leucine zipper protein MERISTEM L1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144 bits (363), Expect = 6.54e-38
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          MLGGHDYEEHH  EEDVVLLEMTQK FETELEKFGE+DQLESSSRSVKDAAMGED PFLH
Sbjct: 1  MLGGHDYEEHHD-EEDVVLLEMTQKNFETELEKFGEDDQLESSSRSVKDAAMGED-PFLH 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          NHTNKRKRYHRHTQLQIQEMEA
Sbjct: 61 NHTNKRKRYHRHTQLQIQEMEA 80

[Close]

BLAST of Csor.00g063330 vs. NCBI nr
Match: XP_023001231.1 (homeobox-leucine zipper protein MERISTEM L1-like [Cucurbita maxima])

HSP 1 Score: 133 bits (335), Expect = 4.53e-34
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          MLGGHDYEEHH  EEDVVLLEMTQK FETELEKFGE+DQ+ESS RSVKDAAMGED PFLH
Sbjct: 1  MLGGHDYEEHHD-EEDVVLLEMTQKNFETELEKFGEDDQMESS-RSVKDAAMGED-PFLH 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          N TNKRKRYHRHTQLQIQEMEA
Sbjct: 61 NPTNKRKRYHRHTQLQIQEMEA 79

[Close]

BLAST of Csor.00g063330 vs. ExPASy TrEMBL
Match: A0A6J1F407 (homeobox-leucine zipper protein MERISTEM L1-like OS=Cucurbita moschata OX=3662 GN=LOC111440037 PE=3 SV=1)

HSP 1 Score: 163 bits (413), Expect = 3.64e-45
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGE+DQLESSSRSVKDAAMGEDDPFLH
Sbjct: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEDDQLESSSRSVKDAAMGEDDPFLH 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          NHTNKRKRYHRHTQLQIQEMEA
Sbjct: 61 NHTNKRKRYHRHTQLQIQEMEA 82

[Close]

BLAST of Csor.00g063330 vs. ExPASy TrEMBL
Match: A0A6J1KI19 (homeobox-leucine zipper protein MERISTEM L1-like OS=Cucurbita maxima OX=3661 GN=LOC111495421 PE=3 SV=1)

HSP 1 Score: 133 bits (335), Expect = 2.19e-34
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          MLGGHDYEEHH  EEDVVLLEMTQK FETELEKFGE+DQ+ESS RSVKDAAMGED PFLH
Sbjct: 1  MLGGHDYEEHHD-EEDVVLLEMTQKNFETELEKFGEDDQMESS-RSVKDAAMGED-PFLH 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          N TNKRKRYHRHTQLQIQEMEA
Sbjct: 61 NPTNKRKRYHRHTQLQIQEMEA 79

[Close]

BLAST of Csor.00g063330 vs. ExPASy TrEMBL
Match: A0A5D3BKB0 (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005970 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.76e-20
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          M G H +E+HHH  +D +LLEMTQK FETELEKFGE++    S     DA +GE+   L 
Sbjct: 1  MFGAHGFEDHHH--QDDLLLEMTQKNFETELEKFGEDEFESRSVTDAMDAPLGEEQCDLL 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          N  NKRKRYHRHTQLQIQEMEA
Sbjct: 61 NQRNKRKRYHRHTQLQIQEMEA 80

[Close]

BLAST of Csor.00g063330 vs. ExPASy TrEMBL
Match: A0A5A7URI6 (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G00450 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.76e-20
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          M G H +E+HHH  +D +LLEMTQK FETELEKFGE++    S     DA +GE+   L 
Sbjct: 1  MFGAHGFEDHHH--QDDLLLEMTQKNFETELEKFGEDEFESRSVTDAMDAPLGEEQCDLL 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          N  NKRKRYHRHTQLQIQEMEA
Sbjct: 61 NQRNKRKRYHRHTQLQIQEMEA 80

[Close]

BLAST of Csor.00g063330 vs. ExPASy TrEMBL
Match: A0A0A0LRM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064670 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.76e-20
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 1  MLGGHDYEEHHHHEEDVVLLEMTQKTFETELEKFGEEDQLESSSRSVKDAAMGEDDPFLH 60
          M G H +E+HHH  +D +LLEMTQK FETELEKFGE++    S     DA +GE+   L 
Sbjct: 1  MFGAHGFEDHHH--QDDLLLEMTQKNFETELEKFGEDEFESRSVTDAMDAPLGEEQCDLL 60

Query: 61 NHTNKRKRYHRHTQLQIQEMEA 82
          N  NKRKRYHRHTQLQIQEMEA
Sbjct: 61 NQRNKRKRYHRHTQLQIQEMEA 80

[Close]

BLAST of Csor.00g063330 vs. TAIR 10
Match: AT4G21750.1 (Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 7  YEEHHHHEEDVVLLEMTQKTFETELEKFG--EED-QLESSSRSVKDAAMGEDDPFLHNHT 66
          +E HHH      + +MT K  E +L   G  EED + +S +    +  + E+    +   
Sbjct: 7  FESHHH------MFDMTPKNSENDLGITGSHEEDFETKSGAEVTMENPLEEELQDPNQRP 66

Query: 67 NKRKRYHRHTQLQIQEMEA 83
          NK+KRYHRHTQ QIQE+E+
Sbjct: 67 NKKKRYHRHTQRQIQELES 79

[Close]

BLAST of Csor.00g063330 vs. TAIR 10
Match: AT4G21750.2 (Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 7  YEEHHHHEEDVVLLEMTQKTFETELEKFG--EED-QLESSSRSVKDAAMGEDDPFLHNHT 66
          +E HHH      + +MT K  E +L   G  EED + +S +    +  + E+    +   
Sbjct: 7  FESHHH------MFDMTPKNSENDLGITGSHEEDFETKSGAEVTMENPLEEELQDPNQRP 66

Query: 67 NKRKRYHRHTQLQIQEMEA 83
          NK+KRYHRHTQ QIQE+E+
Sbjct: 67 NKKKRYHRHTQRQIQELES 79

The following BLAST results are available for this feature:

BLAST of Csor.00g063330 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g063330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584072.1	4.27e-51	100.00	Homeobox-leucine zipper protein HDG2, partial [Cucurbita argyrosperma subsp. sor...	[more]
KAG7019674.1	1.62e-45	100.00	Homeobox-leucine zipper protein MERISTEM L1, partial [Cucurbita argyrosperma sub...	[more]
XP_022933178.1	7.52e-45	98.78	homeobox-leucine zipper protein MERISTEM L1-like [Cucurbita moschata]	[more]
XP_023519981.1	6.54e-38	93.90	homeobox-leucine zipper protein MERISTEM L1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023001231.1	4.53e-34	90.24	homeobox-leucine zipper protein MERISTEM L1-like [Cucurbita maxima]	[more]

BLAST of Csor.00g063330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F407	3.64e-45	98.78	homeobox-leucine zipper protein MERISTEM L1-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KI19	2.19e-34	90.24	homeobox-leucine zipper protein MERISTEM L1-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5D3BKB0	3.76e-20	62.20	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Cucumis melo var. makuwa...	[more]
A0A5A7URI6	3.76e-20	62.20	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Cucumis melo var. makuwa...	[more]
A0A0A0LRM5	3.76e-20	62.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G064670 PE=3 SV=1	[more]

BLAST of Csor.00g063330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21750.1	3.6e-04	37.97	Homeobox-leucine zipper family protein / lipid-binding START domain-containing p...	[more]
AT4G21750.2	3.6e-04	37.97	Homeobox-leucine zipper family protein / lipid-binding START domain-containing p...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g063330.m01	Csor.00g063330.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0008289	lipid binding