Csor.00g062870 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g062870
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 2636396 .. 2638908 (-)
RNA-Seq Expression	Csor.00g062870
Synteny	Csor.00g062870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCCTAATGAGGCAGAGATGCGCATGTGAGTATCCAAGGATTGGAAGTGATTTGACAAGACGAGAAGAAGGGAAGTAGTGGCATCAAAAGAGGGTAATGAGATGCAGACATTTGAGCTGACCTTTCAACCCCAATAAACAACAAACCAAAAAAATACAAAAAAAAGACAAACAAATTCATCACCCTCTCTAAAACTGTCCACATAAACCCTAACCCTAAACAAACAAAACTCTCTCTCTCTCCCCCACTGTAAGAAGGTTAAATGATTGTGGGTTAAATCAAATGGTGTAAAAAAATCTCTATGAACTTTTAACCCTACTTAGGATAGATTCTTAATTTCCTTATAAAATTCTGAGTCTTAAACTTTTGATTTTGTGTTTAATGGACATCTGACATATCTAAAAATTAAAAAAATGCAAGAATTTATTGAAAACAAAATGGATGATTGGAATACTAGATAAGCTACTTAGTACATGAGTTACTCCTATAGTCCTATAGTTATCAATGAGTTTTGAGTTTGGAACCTAGTGTTTATCTAATACTCATATCCAATAATAAGCTTTAGTTCTATAATTTGAAGCTGCTGGCTAAAATTTTGTGTGTAGAAAACAGGGCACTGATTCTCACATGGCTAATAGCTCTGACCCACCACCCACCACCCACCACCCTTCTGAGTCGGACTCAGTTTTCTGTCTTTTGGTAAACATGTTGCGTACAGAGAAGCCACACAGTTGGTGATTGTAATGGGACACTTCATTAAAAGAGAGAGAGAGAGAGATGTAGAAAGAGGGTTCACAAGTCTCGTCTCTCTTTCAGGGTTTTGTTTCATTCCTTTTGCTGTCTTTTGGTTCCCTCTGGATTTGCCTGTCTCATTGGGTTGCTCCATCTTCCCCCCTTCCTTACCCCTGATCAGCTCTGTGTTTTGTGCAATAACCCCAAGTTTTAACTCATGTTTAAGAGCTTCAACCCTCCATTGGGTATTTGCATTAAATGTACATTTGTCCATTGTGTTCGTATCACTATTGGGTTGTTTTAACTAAAGCTAGTTTTGTGAGGAATTTCAAGCCCTATTGGTTGGTTTACCTACATTTCTCGTCATGGAGAAATTACTCAGTGAAGCTGGTACAATGTGATTGACGCTTTTGTTATTGTGTACCAAGTACAAGAGAGAATTTCATCGAACTTTGGTCATAAAAAACTTTAGATTTTTCTCTTCTATATCCAACTTTAGGTAATTGATCTCCACTCAATTAGGTTAGTCTTCATATAGTTGACATATTGTTTTGCGGGCAATCGTTGAATATGGTAGAAATTTTAAGATCTTCGTACTTTTGTGAACATCTTTTTAACTAACTTGTTCTCAAATTCTAATGGAGCACTCTAGCTTTTAATTTTTTTTGGCTTGGACTTGTGGACCTCTAACGCATTTCTTGGGCTTTCAATTTGTAATGACTTCAGCCCACTCTACCTACTAAGTCATAAAAACCAGCTTATTCCAGCAGGGAAATGACAATATAATAAATAGAATCTTAATATCTTCTATATGACTAAACTAACACTTAATCTAATGAAATCACTTTCTATTGATTAATATAGAGAAATAATAATGTGGGGGACTAAATAAAAACTGATCTTCAAACTACAAGGACCAATTAGAAAGCAAATTCAAACTTCAATGATCAAACATCAAATGAAAACCAAATTCAAATCTCAAGGATCAAAAGAATTAGTCTTGAAAACTTGAGAACCAAATAGATATACATGGGCATGTAGTCTAATTTTTGTACACCTACCCATCCCTTCCACTTGGTTTATTTTCTACCACAAGATCTTCATCTAGCTTTCTAAGAGAATTTTTCGTGGGTATTATAAGCAAAAACTGCTACCTTATTTCCATGGCAAAATCTTCGAGAATATGATAGTTATTGGCAAGGTTAAAACGAAGTGTGAATGGTTTGATTTCTAAAGAATCTAAAGCTTTAAAAATGAAATGGGAAGCCAATCAAGTTGAAGTTAAGTTGGTCATCAGTATCAGAATCATATTCCTAAGCTTTATTCCCACGAAACACTACAAGCTTTAGTGAGGATTGGATCGATATATATATATATATATATGGGTAATAGCAGACAATATTCTACCTCAAAGCTTCAAAGATGCCCATATCAGAAGCAAAACAAGACCATCACCCACCAGGTTATTTCTCTCTTCCTCTCCCTCAAAGGTTTCACACTGTCTCTCAATCTAACTGTTCTAAACTATAGGGCATCCGACCGAGGATGCCAGGACAGGCAGGAAGAAACGGTTCTGGGACACTACAAAGAAACGAGGAGATAGAAGTTTTATTGAAGGATGGTAGGCATTTTCCTTTTTTTTTTTTTTTTTTTCCTTTCATTTTTCACTTGAGGAAAAAAAAATGTTACCTGATAAACTTGTGGATTGGATGCAGTCTTTTTGCATTGTGCTGCTGTTGGCTTTGTGAGGCATGCTGCTGATCCTCCTGGGTGA

mRNA sequence

ATGGCCAAGCCTAATGAGGCAGAGATGCGCATAAAACAGGGCACTGATTCTCACATGGCTAATAGCTCTGACCCACCACCCACCACCCACCACCCTTCTGAGTCGGACTCAGTTTTCTGTCTTTTGGGCATCCGACCGAGGATGCCAGGACAGGCAGGAAGAAACGGTTCTGGGACACTACAAAGAAACGAGGAGATAGAAGTTTTATTGAAGGATGTCTTTTTGCATTGTGCTGCTGTTGGCTTTGTGAGGCATGCTGCTGATCCTCCTGGGTGA

Coding sequence (CDS)

ATGGCCAAGCCTAATGAGGCAGAGATGCGCATAAAACAGGGCACTGATTCTCACATGGCTAATAGCTCTGACCCACCACCCACCACCCACCACCCTTCTGAGTCGGACTCAGTTTTCTGTCTTTTGGGCATCCGACCGAGGATGCCAGGACAGGCAGGAAGAAACGGTTCTGGGACACTACAAAGAAACGAGGAGATAGAAGTTTTATTGAAGGATGTCTTTTTGCATTGTGCTGCTGTTGGCTTTGTGAGGCATGCTGCTGATCCTCCTGGGTGA

Protein sequence

MAKPNEAEMRIKQGTDSHMANSSDPPPTTHHPSESDSVFCLLGIRPRMPGQAGRNGSGTLQRNEEIEVLLKDVFLHCAAVGFVRHAADPPG

Homology

[Close]

BLAST of Csor.00g062870 vs. NCBI nr
Match: KAG6580900.1 (hypothetical protein SDJN03_20902, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192 bits (489), Expect = 5.91e-62
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAKPNEAEMRIKQGTDSHMANSSDPPPTTHHPSESDSVFCLLGIRPRMPGQAGRNGSGTL 60
          MAKPNEAEMRIKQGTDSHMANSSDPPPTTHHPSESDSVFCLLGIRPRMPGQAGRNGSGTL
Sbjct: 1  MAKPNEAEMRIKQGTDSHMANSSDPPPTTHHPSESDSVFCLLGIRPRMPGQAGRNGSGTL 60

Query: 61 QRNEEIEVLLKDVFLHCAAVGFVRHAADPPG 91
          QRNEEIEVLLKDVFLHCAAVGFVRHAADPPG
Sbjct: 61 QRNEEIEVLLKDVFLHCAAVGFVRHAADPPG 91

The following BLAST results are available for this feature:

BLAST of Csor.00g062870 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g062870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580900.1	5.91e-62	100.00	hypothetical protein SDJN03_20902, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g062870 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g062870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g062870.m01	Csor.00g062870.m01	mRNA