Csor.00g062390 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g062390
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like
Location	Csor_Chr14: 2902556 .. 2903229 (-)
RNA-Seq Expression	Csor.00g062390
Synteny	Csor.00g062390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCGGCTCTCTCCAGAACTCCAAGACGCCTCTTCCTCCCTTCCAAACTCCTTCCTTCTTTCACATATTCAACAACTTCGCCGCTTCAACCAAACTCCGATTCCCCTTTCCCTTCATTTCCTGCTGCTAAATCCGCCATTTTGACCTTCCGGCATTCCGACGCCACCGCCCAATCTACCACTATTCCATCCGCAAACTCGCGCGTGCTCAATGCTTCGACTTCATCGGTGGCATCATTCAATCCCACCTCAAATTCCCCTCCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCTTGAGATGTTTAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTGTTAGGAGCTTACTGGAACAAAGGCGATTTGGTGGATTCGACGGGATTGTGA

mRNA sequence

ATGGCTGCGGCTCTCTCCAGAACTCCAAGACGCCTCTTCCTCCCTTCCAAACTCCTTCCTTCTTTCACATATTCAACAACTTCGCCGCTTCAACCAAACTCCGATTCCCCTTTCCCTTCATTTCCTGCTGCTAAATCCGCCATTTTGACCTTCCGGCATTCCGACGCCACCGCCCAATCTACCACTATTCCATCCGCAAACTCGCGCGTGCTCAATGCTTCGACTTCATCGGTGGCATCATTCAATCCCACCTCAAATTCCCCTCCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTGTTAGGAGCTTACTGGAACAAAGGCGATTTGGTGGATTCGACGGGATTGTGA

Coding sequence (CDS)

ATGGCTGCGGCTCTCTCCAGAACTCCAAGACGCCTCTTCCTCCCTTCCAAACTCCTTCCTTCTTTCACATATTCAACAACTTCGCCGCTTCAACCAAACTCCGATTCCCCTTTCCCTTCATTTCCTGCTGCTAAATCCGCCATTTTGACCTTCCGGCATTCCGACGCCACCGCCCAATCTACCACTATTCCATCCGCAAACTCGCGCGTGCTCAATGCTTCGACTTCATCGGTGGCATCATTCAATCCCACCTCAAATTCCCCTCCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTGTTAGGAGCTTACTGGAACAAAGGCGATTTGGTGGATTCGACGGGATTGTGA

Protein sequence

MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQSTTIPSANSRVLNASTSSVASFNPTSNSPPPFLKASGSASSCSTPAPVWSIKLFALLIRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVDSTGL

Homology

[Close]

BLAST of Csor.00g062390 vs. ExPASy Swiss-Prot
Match: Q9FFE3 (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-06
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 116 LIRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLG 175
           + +   E  G+TP + + NL++KA  ++ND+ESA   +DE+      +VPN+ +Y  +LG
Sbjct: 177 MFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI--PSMGLVPNLVTYTTILG 236

Query: 176 AYWNKGDL 184
            Y  +GD+
Sbjct: 237 GYVARGDM 242

[Close]

BLAST of Csor.00g062390 vs. ExPASy Swiss-Prot
Match: O04504 (Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana OX=3702 GN=At1g09820 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.8e-04
Identity = 24/76 (31.58%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 114 ALLIRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNIL 173
           A+L++ +  K+G+ P  +++N+V+K + ++ +L++A N   ++ K + ++  N+ SYN+L
Sbjct: 490 AMLLKEM-SKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK-ERRLRMNVASYNVL 549

Query: 174 LGAYWNKGDLVDSTGL 190
           L  Y  KG L D+  L
Sbjct: 550 LQGYSQKGKLEDANML 563

[Close]

BLAST of Csor.00g062390 vs. NCBI nr
Match: KAG6580948.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359 bits (921), Expect = 1.15e-124
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60
           MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS
Sbjct: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60

Query: 61  TTIPSANSRVLNASTSSVASFNPTSNSPPPFLKASGSASSCSTPAPVWSIKLFALLIRTI 120
           TTIPSANSRVLNASTSSVASFNPTSNSPPPFLKASGSASSCSTPAPVWSIKLFALLIRTI
Sbjct: 61  TTIPSANSRVLNASTSSVASFNPTSNSPPPFLKASGSASSCSTPAPVWSIKLFALLIRTI 120

Query: 121 PEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNK 180
           PEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNK
Sbjct: 121 PEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNK 180

Query: 181 GDLVDSTGL 189
           GDLVDSTGL
Sbjct: 181 GDLVDSTGL 189

[Close]

BLAST of Csor.00g062390 vs. NCBI nr
Match: XP_022934708.1 (pentatricopeptide repeat-containing protein At3g13150-like [Cucurbita moschata])

HSP 1 Score: 182 bits (461), Expect = 1.64e-53
Identity = 129/240 (53.75%), Postives = 142/240 (59.17%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60
           MAAALSRTPRRLFL SKLLP FTYSTT PLQPNSDSPF SF AAKSAIL+    D  AQS
Sbjct: 1   MAAALSRTPRRLFLHSKLLPPFTYSTTPPLQPNSDSPFHSFRAAKSAILSQSDPDKLAQS 60

Query: 61  ----TTIPS--ANSRVLNASTSSVASFNP--------TSNSPPPFLKASG---------S 120
               + +P+   N    + S   +A             S+   PF  + G         S
Sbjct: 61  FIQYSDLPAFRRNCPTYHYSIRKLARAQRFDLMDGIIQSHLKSPFAISEGFWIRLIMLYS 120

Query: 121 ASSC-------------STPAPVWSIKLFALL---------------IRTIPEKIGVTPT 180
           +S               + P  +    L A+L                RTIPEKIGVTPT
Sbjct: 121 SSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPT 180

Query: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVDSTGL 189
           VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNI LGAYWNKGDLV   G+
Sbjct: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNIFLGAYWNKGDLVGFDGI 240

[Close]

BLAST of Csor.00g062390 vs. NCBI nr
Match: XP_022983790.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 180 bits (456), Expect = 2.31e-51
Identity = 126/240 (52.50%), Postives = 138/240 (57.50%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60
           MAAALSRT RRLFLPSKLLPSFTYSTT PLQPNSDSPFPSF AAKSAIL+    D  AQS
Sbjct: 1   MAAALSRTARRLFLPSKLLPSFTYSTTPPLQPNSDSPFPSFRAAKSAILSQSDPDKLAQS 60

Query: 61  ----TTIPSANS----------RVLNASTSSVASFNPTSNSPPP-------------FLK 120
               + +P+             ++  A    +      S   PP                
Sbjct: 61  FIQYSDLPAFRRHRPIYHYSIRKLARAQRFDLIDGIIQSQLKPPSAISEGFWIRLIMLYS 120

Query: 121 ASGSASSC---------STPAPVWSIKLFALL---------------IRTIPEKIGVTPT 180
           +SG              + P  +    L A+L                RTIPEKIGVTPT
Sbjct: 121 SSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPT 180

Query: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVDSTGL 189
           VVSHNL LKAFVQQNDLE ARN IDELYKDDAKVVPNIDSYNILLGAYWNKGDLV   G+
Sbjct: 181 VVSHNLALKAFVQQNDLELARNLIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGFDGI 240

[Close]

BLAST of Csor.00g062390 vs. NCBI nr
Match: XP_022983789.1 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 180 bits (456), Expect = 2.60e-51
Identity = 126/240 (52.50%), Postives = 138/240 (57.50%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60
           MAAALSRT RRLFLPSKLLPSFTYSTT PLQPNSDSPFPSF AAKSAIL+    D  AQS
Sbjct: 1   MAAALSRTARRLFLPSKLLPSFTYSTTPPLQPNSDSPFPSFRAAKSAILSQSDPDKLAQS 60

Query: 61  ----TTIPSANS----------RVLNASTSSVASFNPTSNSPPP-------------FLK 120
               + +P+             ++  A    +      S   PP                
Sbjct: 61  FIQYSDLPAFRRHRPIYHYSIRKLARAQRFDLIDGIIQSQLKPPSAISEGFWIRLIMLYS 120

Query: 121 ASGSASSC---------STPAPVWSIKLFALL---------------IRTIPEKIGVTPT 180
           +SG              + P  +    L A+L                RTIPEKIGVTPT
Sbjct: 121 SSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPT 180

Query: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVDSTGL 189
           VVSHNL LKAFVQQNDLE ARN IDELYKDDAKVVPNIDSYNILLGAYWNKGDLV   G+
Sbjct: 181 VVSHNLALKAFVQQNDLELARNLIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGFDGI 240

[Close]

BLAST of Csor.00g062390 vs. NCBI nr
Match: KAG7017692.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150 bits (379), Expect = 4.12e-43
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 116 LIRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLG 175
           + RTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLG
Sbjct: 51  MFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLG 110

Query: 176 AYWNKGDLVDSTGL 189
           AYWNKGDLVDSTGL
Sbjct: 111 AYWNKGDLVDSTGL 124

[Close]

BLAST of Csor.00g062390 vs. ExPASy TrEMBL
Match: A0A6J1F8F0 (pentatricopeptide repeat-containing protein At3g13150-like OS=Cucurbita moschata OX=3662 GN=LOC111441813 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 7.96e-54
Identity = 129/240 (53.75%), Postives = 142/240 (59.17%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60
           MAAALSRTPRRLFL SKLLP FTYSTT PLQPNSDSPF SF AAKSAIL+    D  AQS
Sbjct: 1   MAAALSRTPRRLFLHSKLLPPFTYSTTPPLQPNSDSPFHSFRAAKSAILSQSDPDKLAQS 60

Query: 61  ----TTIPS--ANSRVLNASTSSVASFNP--------TSNSPPPFLKASG---------S 120
               + +P+   N    + S   +A             S+   PF  + G         S
Sbjct: 61  FIQYSDLPAFRRNCPTYHYSIRKLARAQRFDLMDGIIQSHLKSPFAISEGFWIRLIMLYS 120

Query: 121 ASSC-------------STPAPVWSIKLFALL---------------IRTIPEKIGVTPT 180
           +S               + P  +    L A+L                RTIPEKIGVTPT
Sbjct: 121 SSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPT 180

Query: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVDSTGL 189
           VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNI LGAYWNKGDLV   G+
Sbjct: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNIFLGAYWNKGDLVGFDGI 240

[Close]

BLAST of Csor.00g062390 vs. ExPASy TrEMBL
Match: A0A6J1J6X0 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482304 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 1.12e-51
Identity = 126/240 (52.50%), Postives = 138/240 (57.50%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60
           MAAALSRT RRLFLPSKLLPSFTYSTT PLQPNSDSPFPSF AAKSAIL+    D  AQS
Sbjct: 1   MAAALSRTARRLFLPSKLLPSFTYSTTPPLQPNSDSPFPSFRAAKSAILSQSDPDKLAQS 60

Query: 61  ----TTIPSANS----------RVLNASTSSVASFNPTSNSPPP-------------FLK 120
               + +P+             ++  A    +      S   PP                
Sbjct: 61  FIQYSDLPAFRRHRPIYHYSIRKLARAQRFDLIDGIIQSQLKPPSAISEGFWIRLIMLYS 120

Query: 121 ASGSASSC---------STPAPVWSIKLFALL---------------IRTIPEKIGVTPT 180
           +SG              + P  +    L A+L                RTIPEKIGVTPT
Sbjct: 121 SSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPT 180

Query: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVDSTGL 189
           VVSHNL LKAFVQQNDLE ARN IDELYKDDAKVVPNIDSYNILLGAYWNKGDLV   G+
Sbjct: 181 VVSHNLALKAFVQQNDLELARNLIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGFDGI 240

[Close]

BLAST of Csor.00g062390 vs. ExPASy TrEMBL
Match: A0A6J1J8H6 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482304 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 1.26e-51
Identity = 126/240 (52.50%), Postives = 138/240 (57.50%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60
           MAAALSRT RRLFLPSKLLPSFTYSTT PLQPNSDSPFPSF AAKSAIL+    D  AQS
Sbjct: 1   MAAALSRTARRLFLPSKLLPSFTYSTTPPLQPNSDSPFPSFRAAKSAILSQSDPDKLAQS 60

Query: 61  ----TTIPSANS----------RVLNASTSSVASFNPTSNSPPP-------------FLK 120
               + +P+             ++  A    +      S   PP                
Sbjct: 61  FIQYSDLPAFRRHRPIYHYSIRKLARAQRFDLIDGIIQSQLKPPSAISEGFWIRLIMLYS 120

Query: 121 ASGSASSC---------STPAPVWSIKLFALL---------------IRTIPEKIGVTPT 180
           +SG              + P  +    L A+L                RTIPEKIGVTPT
Sbjct: 121 SSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPT 180

Query: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVDSTGL 189
           VVSHNL LKAFVQQNDLE ARN IDELYKDDAKVVPNIDSYNILLGAYWNKGDLV   G+
Sbjct: 181 VVSHNLALKAFVQQNDLELARNLIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVGFDGI 240

[Close]

BLAST of Csor.00g062390 vs. ExPASy TrEMBL
Match: A0A5A7UGZ0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007730 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 7.92e-41
Identity = 112/235 (47.66%), Postives = 135/235 (57.45%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQS 60
           MAAAL RTPRRLFL S+L  SF YSTT PLQPNSDSPF SF AAKSAIL+    +  AQS
Sbjct: 1   MAAALPRTPRRLFLISRLH-SFAYSTTLPLQPNSDSPFSSFRAAKSAILSQSDPEKLAQS 60

Query: 61  ----TTIPS---------------ANSRVLNASTSSVASF--NPTSNSPPPFLKASGSAS 120
               ++ PS               A ++  +     + S   +P++ S   +++     S
Sbjct: 61  FIQASSFPSFRRYRPIYHQSIRKLARAQRFDLIDDIIQSHLKSPSATSEGFWIRLIMLYS 120

Query: 121 SCST---------------PAPVWSIKLFALL---------------IRTIPEKIGVTPT 180
           S                  P  +    L A+L                R+ PEKIGVTPT
Sbjct: 121 SVGMVSQALHILDQAILHKPCNLSEKSLCAILSVYLDNSMPEKVHEMFRSTPEKIGVTPT 180

Query: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLV 184
           V+SHNLVLKAFV+QNDL SARNWIDELYKDDAKV+PNIDSY ILLGAYW+ GD+V
Sbjct: 181 VISHNLVLKAFVRQNDLPSARNWIDELYKDDAKVIPNIDSYTILLGAYWSNGDMV 234

[Close]

BLAST of Csor.00g062390 vs. ExPASy TrEMBL
Match: A0A6J1DEN3 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111019809 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 7.92e-41
Identity = 116/240 (48.33%), Postives = 132/240 (55.00%), Query Frame = 0


Query: 1   MAAALSRTPRRLFLPSKLLPSFTYSTTSPLQPNSDSPFPSFPAAKSAILTFRHSDATAQ- 60
           MAAALSRTPR L LPSKLL SFTYSTT+P+QPN D PFPSF AAKSAIL+    D  AQ 
Sbjct: 1   MAAALSRTPRCLPLPSKLLSSFTYSTTAPIQPNPDLPFPSFRAAKSAILSESDPDKLAQT 60

Query: 61  ---STTIPSANSR--VLNASTSSVASFNP--------TSNSPPPFLKASG---------- 120
              S+ +PS      + + S   +A             ++   P LK  G          
Sbjct: 61  FIQSSQLPSFRRHRPIYHLSIRKLARSQRFDLIDAILQTHQKSPSLKPEGFWIRLMMLYS 120

Query: 121 ----------------SASSCSTP----APVWSIKLFALL-------IRTIPEKIGVTPT 180
                              SC         V S+ L   L        R IPEK+GVTPT
Sbjct: 121 SAGMTDQAMRTLDHVIQNKSCDLSEKSLCAVLSVYLNNSLPEKVHEMFRCIPEKLGVTPT 180

Query: 181 VVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDLVDSTGL 189
           VVSHNLVLKAFVQQNDL+SARNWI+ELYKD  K+VPNIDSYNILLGAY   GD V   G+
Sbjct: 181 VVSHNLVLKAFVQQNDLQSARNWIEELYKD-VKIVPNIDSYNILLGAYLKNGDSVGFDGI 239

[Close]

BLAST of Csor.00g062390 vs. TAIR 10
Match: AT5G16420.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-07
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 116 LIRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLG 175
           + +   E  G+TP + + NL++KA  ++ND+ESA   +DE+      +VPN+ +Y  +LG
Sbjct: 177 MFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI--PSMGLVPNLVTYTTILG 236

Query: 176 AYWNKGDL 184
            Y  +GD+
Sbjct: 237 GYVARGDM 242

[Close]

BLAST of Csor.00g062390 vs. TAIR 10
Match: AT1G09820.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-05
Identity = 24/76 (31.58%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 114 ALLIRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNIL 173
           A+L++ +  K+G+ P  +++N+V+K + ++ +L++A N   ++ K + ++  N+ SYN+L
Sbjct: 490 AMLLKEM-SKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEK-ERRLRMNVASYNVL 549

Query: 174 LGAYWNKGDLVDSTGL 190
           L  Y  KG L D+  L
Sbjct: 550 LQGYSQKGKLEDANML 563

[Close]

BLAST of Csor.00g062390 vs. TAIR 10
Match: AT1G53330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 9.8e-05
Identity = 21/65 (32.31%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 114 ALLIRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNIL 173
           ++++  + EK G  P  V++N+++  F  +ND ESA   +DE+ +   K  P++ SYN++
Sbjct: 278 SMILEEMSEK-GCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLK--PDVISYNMI 337

Query: 174 LGAYW 179
           LG ++
Sbjct: 338 LGVFF 339

[Close]

BLAST of Csor.00g062390 vs. TAIR 10
Match: AT4G01400.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 125 GVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDL 184
           GV P   S+NL+++AF   +DL  A     ++ + D  VVP++DSY IL+  +  KG +
Sbjct: 185 GVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERD--VVPDVDSYKILIQGFCRKGQV 241

[Close]

BLAST of Csor.00g062390 vs. TAIR 10
Match: AT4G01400.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 125 GVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNILLGAYWNKGDL 184
           GV P   S+NL+++AF   +DL  A     ++ + D  VVP++DSY IL+  +  KG +
Sbjct: 185 GVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERD--VVPDVDSYKILIQGFCRKGQV 241

The following BLAST results are available for this feature:

BLAST of Csor.00g062390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFE3	3.9e-06	35.29	Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop...	[more]
O04504	2.8e-04	31.58	Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana OX...	[more]

BLAST of Csor.00g062390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6580948.1	1.15e-124	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022934708.1	1.64e-53	53.75	pentatricopeptide repeat-containing protein At3g13150-like [Cucurbita moschata]	[more]
XP_022983790.1	2.31e-51	52.50	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor...	[more]
XP_022983789.1	2.60e-51	52.50	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor...	[more]
KAG7017692.1	4.12e-43	97.30	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Csor.00g062390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8F0	7.96e-54	53.75	pentatricopeptide repeat-containing protein At3g13150-like OS=Cucurbita moschata...	[more]
A0A6J1J6X0	1.12e-51	52.50	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor...	[more]
A0A6J1J8H6	1.26e-51	52.50	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor...	[more]
A0A5A7UGZ0	7.92e-41	47.66	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1DEN3	7.92e-41	48.33	pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Mom...	[more]

BLAST of Csor.00g062390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16420.1	2.8e-07	35.29	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G09820.1	2.0e-05	31.58	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G53330.1	9.8e-05	32.31	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G01400.1	1.7e-04	37.29	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G01400.3	1.7e-04	37.29	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 108..188 e-value: 4.5E-10 score: 41.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 125..177 e-value: 1.4E-5 score: 25.0
None	No IPR available	PANTHER	PTHR46128:SF264	REPEAT 336, PUTATIVE-RELATED	coord: 113..184
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 113..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g062390.m01	Csor.00g062390.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity