Csor.00g061550 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g061550
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr03: 5685311 .. 5685721 (-)
RNA-Seq Expression	Csor.00g061550
Synteny	Csor.00g061550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGCTCTGCCGTAAAAACACCGTTCATCCATCGCCGCCGATAATTTCCGACTTCCTTTCGTTTTTGCCGGCCGCCATATTCACCCTCACCGTGGCTCTTTCCGCCGACGACAAGGAAGTCCTGGCCTATCTCATCTCCTGTTCCAACACCAGCGCCTCTCTCTCCAACTTATCTAGCACTCGCAAGTCCGGTCGGAAACCCACCGCCGGAAAGGTCGGTGTCGACCACGCTCCGCTTTTCGACTGCGATTGTTTCATGTGCTATCGGCGATACTGGGCGAGATGGGACTATATGTGGATGCTCTGTTCTGTGTTAAATTTGAGAATATGGATGAGAGTAGTCGGGATGATGATGGGCACCATTGTTGGCGTTGGAGTTGCAGAGATTCTGATGATTTTCATTTAA

mRNA sequence

ATGAAGAAGCTCTGCCGTAAAAACACCGTTCATCCATCGCCGCCGATAATTTCCGACTTCCTTTCGTTTTTGCCGGCCGCCATATTCACCCTCACCGTGGCTCTTTCCGCCGACGACAAGGAAGTCCTGGCCTATCTCATCTCCTGTTCCAACACCAGCGCCTCTCTCTCCAACTTATCTAGCACTCGCAAGTCCGGTCGGAAACCCACCGCCGGAAAGGTCGGTGTCGACCACGCTCCGCTTTTCGACTGCGATTGTTTCATGTGCTATCGGCGATACTGGGCGAGATGGGACTATATGTGGATGCTCTGTTCTGTGTTAAATTTGAGAATATGGATGAGAGTAGTCGGGATGATGATGGGCACCATTGTTGGCGTTGGAGTTGCAGAGATTCTGATGATTTTCATTTAA

Coding sequence (CDS)

ATGAAGAAGCTCTGCCGTAAAAACACCGTTCATCCATCGCCGCCGATAATTTCCGACTTCCTTTCGTTTTTGCCGGCCGCCATATTCACCCTCACCGTGGCTCTTTCCGCCGACGACAAGGAAGTCCTGGCCTATCTCATCTCCTGTTCCAACACCAGCGCCTCTCTCTCCAACTTATCTAGCACTCGCAAGTCCGGTCGGAAACCCACCGCCGGAAAGGTCGGTGTCGACCACGCTCCGCTTTTCGACTGCGATTGTTTCATGTGCTATCGGCGATACTGGGCGAGATGGGACTATATGTGGATGCTCTGTTCTGTGTTAAATTTGAGAATATGGATGAGAGTAGTCGGGATGATGATGGGCACCATTGTTGGCGTTGGAGTTGCAGAGATTCTGATGATTTTCATTTAA

Protein sequence

MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLSSTRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWDYMWMLCSVLNLRIWMRVVGMMMGTIVGVGVAEILMIFI

Homology

[Close]

BLAST of Csor.00g061550 vs. NCBI nr
Match: KAG6603809.1 (hypothetical protein SDJN03_04418, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271 bits (692), Expect = 1.76e-91
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
           MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS
Sbjct: 1   MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60

Query: 61  STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWDYMWMLCSVLNLRIWMRVVGMMM 120
           STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWDYMWMLCSVLNLRIWMRVVGMMM
Sbjct: 61  STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWDYMWMLCSVLNLRIWMRVVGMMM 120

Query: 121 GTIVGVGVAEILMIFI 136
           GTIVGVGVAEILMIFI
Sbjct: 121 GTIVGVGVAEILMIFI 136

[Close]

BLAST of Csor.00g061550 vs. NCBI nr
Match: KAG7033980.1 (hypothetical protein SDJN02_03706, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203 bits (517), Expect = 6.14e-64
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
          MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS
Sbjct: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60

Query: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
          STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD
Sbjct: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98

[Close]

BLAST of Csor.00g061550 vs. NCBI nr
Match: XP_023544435.1 (uncharacterized protein LOC111804018 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201 bits (511), Expect = 5.18e-63
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
          MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTV LSADDKEVLAYLISCSNTSASLSNLS
Sbjct: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVVLSADDKEVLAYLISCSNTSASLSNLS 60

Query: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
          STRKSGRKPTAGKVGVDHAP+FDCDCFMCYRRYWARWD
Sbjct: 61 STRKSGRKPTAGKVGVDHAPIFDCDCFMCYRRYWARWD 98

[Close]

BLAST of Csor.00g061550 vs. NCBI nr
Match: XP_022979041.1 (uncharacterized protein LOC111478801 [Cucurbita maxima])

HSP 1 Score: 200 bits (509), Expect = 1.01e-62
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
          MKKLCRKNTVHPSPPIISDFLSFLPA IFTLTVALSADDKEVLAYLISCSNTSASLSNLS
Sbjct: 1  MKKLCRKNTVHPSPPIISDFLSFLPAVIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60

Query: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
           TRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD
Sbjct: 61 DTRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98

[Close]

BLAST of Csor.00g061550 vs. NCBI nr
Match: XP_038882712.1 (uncharacterized protein LOC120073876 [Benincasa hispida])

HSP 1 Score: 185 bits (470), Expect = 1.03e-56
Identity = 88/98 (89.80%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
          MKKLCRK+TVHPSPPIISDFLSFLPAAIF LTVALSADDKEVLAYLISCSNT+ASLSNLS
Sbjct: 1  MKKLCRKSTVHPSPPIISDFLSFLPAAIFALTVALSADDKEVLAYLISCSNTTASLSNLS 60

Query: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
           +RK+ RK  AGKVGVDHAP+FDCDCFMCYRRYWARWD
Sbjct: 61 GSRKNARKIAAGKVGVDHAPIFDCDCFMCYRRYWARWD 98

[Close]

BLAST of Csor.00g061550 vs. ExPASy TrEMBL
Match: A0A6J1IPN3 (uncharacterized protein LOC111478801 OS=Cucurbita maxima OX=3661 GN=LOC111478801 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 4.89e-63
Identity = 96/98 (97.96%), Postives = 96/98 (97.96%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
          MKKLCRKNTVHPSPPIISDFLSFLPA IFTLTVALSADDKEVLAYLISCSNTSASLSNLS
Sbjct: 1  MKKLCRKNTVHPSPPIISDFLSFLPAVIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60

Query: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
           TRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD
Sbjct: 61 DTRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98

[Close]

BLAST of Csor.00g061550 vs. ExPASy TrEMBL
Match: A0A5D3CNJ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006090 PE=4 SV=1)

HSP 1 Score: 181 bits (460), Expect = 1.65e-55
Identity = 86/98 (87.76%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
          MKKLCRK+TVHPSPPIISDFLSFLPAAIF LTVALSADDKEVLAYLISCSN++AS SNLS
Sbjct: 1  MKKLCRKSTVHPSPPIISDFLSFLPAAIFALTVALSADDKEVLAYLISCSNSTASFSNLS 60

Query: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
           +RK+GRK  A KVG+DHAPLFDCDCFMCYRRYWARWD
Sbjct: 61 GSRKNGRKIAAVKVGIDHAPLFDCDCFMCYRRYWARWD 98

[Close]

BLAST of Csor.00g061550 vs. ExPASy TrEMBL
Match: A0A1S3B0U5 (uncharacterized protein LOC103484646 OS=Cucumis melo OX=3656 GN=LOC103484646 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 2.33e-55
Identity = 86/98 (87.76%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
          MKKLCRK+TVHPSPPIISDFLSFLPAAIF LTVALSADDKEVLAYLISCSN++AS SNLS
Sbjct: 1  MKKLCRKSTVHPSPPIISDFLSFLPAAIFALTVALSADDKEVLAYLISCSNSTASFSNLS 60

Query: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
           +RK+GRK  A KVG+DHAPLFDCDCFMCYRRYWARWD
Sbjct: 61 GSRKNGRKIAALKVGIDHAPLFDCDCFMCYRRYWARWD 98

[Close]

BLAST of Csor.00g061550 vs. ExPASy TrEMBL
Match: A0A0A0KMY4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511820 PE=4 SV=1)

HSP 1 Score: 181 bits (458), Expect = 3.31e-55
Identity = 87/98 (88.78%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLSNLS 60
          MKKLCRK+TVHPSPPIISDFLSFLPAAIF LT+ALSADDKEVLAYLISCSN++ASLSNLS
Sbjct: 1  MKKLCRKSTVHPSPPIISDFLSFLPAAIFALTLALSADDKEVLAYLISCSNSTASLSNLS 60

Query: 61 STRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
            RK+GRK  A KVGVDHAPLFDCDCFMCYRRYWARWD
Sbjct: 61 GGRKNGRKIAALKVGVDHAPLFDCDCFMCYRRYWARWD 98

[Close]

BLAST of Csor.00g061550 vs. ExPASy TrEMBL
Match: A0A6J1BXK4 (uncharacterized protein LOC111005626 OS=Momordica charantia OX=3673 GN=LOC111005626 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 1.37e-48
Identity = 80/100 (80.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MKKLCRKNTVHPSPPIISDFLSFLPAAIFTLTVALSADDKEVLAYLISCSNT--SASLSN 60
           MKKLCRK+TVHPSPPIISDFLSFLPAAI  LT+ALSADDKEVLAYLISCS++  +A+ SN
Sbjct: 1   MKKLCRKSTVHPSPPIISDFLSFLPAAILALTLALSADDKEVLAYLISCSSSGSNATASN 60

Query: 61  LSSTRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 98
            S  RK+ RK   GK GVDHAPLFDCDCFMCYRRYWARWD
Sbjct: 61  FSGARKASRKHGGGKGGVDHAPLFDCDCFMCYRRYWARWD 100

[Close]

BLAST of Csor.00g061550 vs. TAIR 10
Match: AT1G62422.1 (unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12020.1); Has 87 Blast hits to 86 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-21
Identity = 55/102 (53.92%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPP--IISD--FLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASL 60
          MKKLCRK TVHPSPP  I +D  FLS LP AI +L  ALS +D+EVLAYLIS S  S  +
Sbjct: 1  MKKLCRKGTVHPSPPPAIKTDEQFLSLLPVAILSLVAALSVEDREVLAYLISNSGDSNRI 60

Query: 61 SNLSSTRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 99
          S L   ++             H+PLF CDCF CY  YW RWD
Sbjct: 61 SRLKKNKEDNH----------HSPLFLCDCFSCYTSYWVRWD 92

[Close]

BLAST of Csor.00g061550 vs. TAIR 10
Match: AT1G12020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1  MKKLCRKNTVHPSPPIISD---FLSFLPAAIFTLTVALSADDKEVLAYLISCSNTSASLS 60
          MKKL RK TVHPSPP I      L+ LP AIF+L   LS +D+EVLAYLIS ++ S   +
Sbjct: 1  MKKLYRKGTVHPSPPQIKSNDHLLTLLPVAIFSLAAVLSPEDREVLAYLISTASYSGERN 60

Query: 61 NLSSTRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 99
            S   K+  K     +  +H+PLF CDCF CY  YW RWD
Sbjct: 61 PTSRLNKT--KAHKKALFDNHSPLFHCDCFSCYTSYWVRWD 99

[Close]

BLAST of Csor.00g061550 vs. TAIR 10
Match: AT5G13090.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 43/117 (36.75%), Postives = 58/117 (49.57%), Query Frame = 0


Query: 3   KLCRKNTVHPSPP--------------------IISDFLSFLPAAIFTLTVALSADDKEV 62
           K+ +K  V+PSPP                         L  LPA I  L   LS++++EV
Sbjct: 2   KMKKKGKVYPSPPPPPQSSSSSSSSNHLNEEDDDSLSVLKLLPATILVLVSVLSSEEREV 61

Query: 63  LAYLISCSNTSASLSNLSSTRKSGRKPTAGKVGVDH-APLFDCDCFMCYRRYWARWD 99
           LAYLI+   T +   N SS  K+ +K  + K   +H  P+FDC+CF CY  YW RWD
Sbjct: 62  LAYLITRGTTISDRGNSSSKNKTKKK--SNKSSKNHKPPVFDCECFDCYTNYWFRWD 116

[Close]

BLAST of Csor.00g061550 vs. TAIR 10
Match: AT1G24270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13090.1); Has 84 Blast hits to 83 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-11
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 3   KLCRKNTVHPSPPIIS-------DFLS---FLPAAIFTLTVALSADDKEVLAYLISCSNT 62
           K+ +K  VHPSPP+ S       D LS    L +AI  L   LSA+D EVLAYLI+ S  
Sbjct: 56  KVMKKGKVHPSPPLPSSSSSNGDDSLSVFKLLQSAILVLVSVLSAEDLEVLAYLITRSLN 115

Query: 63  SASLSNLSSTRKSGRKPTAGKVGVDHAPLFDCDCFMCYRRYWARWD 99
           + ++  +S  +K   K          APL DC CF CY  YW++WD
Sbjct: 116 TTNV--VSCKKKRSHK----------APLLDCQCFDCYTSYWSKWD 149

The following BLAST results are available for this feature:

BLAST of Csor.00g061550 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g061550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603809.1	1.76e-91	100.00	hypothetical protein SDJN03_04418, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033980.1	6.14e-64	100.00	hypothetical protein SDJN02_03706, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023544435.1	5.18e-63	97.96	uncharacterized protein LOC111804018 [Cucurbita pepo subsp. pepo]	[more]
XP_022979041.1	1.01e-62	97.96	uncharacterized protein LOC111478801 [Cucurbita maxima]	[more]
XP_038882712.1	1.03e-56	89.80	uncharacterized protein LOC120073876 [Benincasa hispida]	[more]

BLAST of Csor.00g061550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPN3	4.89e-63	97.96	uncharacterized protein LOC111478801 OS=Cucurbita maxima OX=3661 GN=LOC111478801...	[more]
A0A5D3CNJ0	1.65e-55	87.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B0U5	2.33e-55	87.76	uncharacterized protein LOC103484646 OS=Cucumis melo OX=3656 GN=LOC103484646 PE=...	[more]
A0A0A0KMY4	3.31e-55	88.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511820 PE=4 SV=1	[more]
A0A6J1BXK4	1.37e-48	80.00	uncharacterized protein LOC111005626 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of Csor.00g061550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62422.1	2.4e-21	53.92	unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth ...	[more]
AT1G12020.1	1.0e-19	50.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G13090.1	2.0e-12	36.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G24270.1	1.3e-11	41.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31903:SF6	F12F1.11-RELATED	coord: 1..98
None	No IPR available	PANTHER	PTHR31903	F12F1.11-RELATED	coord: 1..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g061550.m01	Csor.00g061550.m01	mRNA